Wall clock time and date at job start Sat Apr 11 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47250 * 2 1 4 4 C 1.52999 * 109.47301 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47064 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47372 * 55.00286 * 5 4 3 7 7 N 1.46500 * 109.46816 * 294.99547 * 5 4 3 8 8 C 1.34771 * 120.00540 * 300.00059 * 7 5 4 9 9 N 1.34772 * 120.00228 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99676 * 359.97438 * 8 7 5 11 11 C 1.50709 * 109.46981 * 174.99815 * 5 4 3 12 12 O 1.21285 * 119.99886 * 99.99465 * 11 5 4 13 13 N 1.34775 * 119.99882 * 280.27817 * 11 5 4 14 14 C 1.46920 * 120.63051 * 354.38500 * 13 11 5 15 15 C 1.53619 * 108.54284 * 126.37482 * 14 13 11 16 16 C 1.53046 * 109.24430 * 54.85428 * 15 14 13 17 17 C 1.53036 * 109.53400 * 298.51414 * 16 15 14 18 18 C 1.46925 * 120.62578 * 174.67323 * 13 11 5 19 19 H 1.09002 * 109.58954 * 113.79776 * 18 13 11 20 20 C 1.52993 * 109.59141 * 353.50850 * 18 13 11 21 21 N 1.46499 * 109.47351 * 73.06370 * 20 18 13 22 22 C 1.36935 * 120.00223 * 174.78074 * 21 20 18 23 23 H 1.07999 * 120.00150 * 0.02562 * 22 21 20 24 24 C 1.38819 * 119.99801 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00212 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99604 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47528 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46722 * 120.00289 * 26 24 22 29 29 H 1.48503 * 109.46987 * 239.99950 * 26 24 22 30 30 H 1.09007 * 109.47564 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47234 * 299.99875 * 1 2 3 32 32 H 1.09001 * 109.47518 * 60.00079 * 1 2 3 33 33 H 1.08999 * 109.47234 * 240.00125 * 2 1 3 34 34 H 1.09003 * 109.47436 * 120.00460 * 2 1 3 35 35 H 1.09001 * 109.46858 * 60.00464 * 3 2 1 36 36 H 1.08992 * 109.46959 * 300.00198 * 3 2 1 37 37 H 1.08999 * 109.47430 * 59.99974 * 4 3 2 38 38 H 1.09003 * 109.47190 * 300.00340 * 4 3 2 39 39 H 0.97000 * 119.99414 * 120.01006 * 7 5 4 40 40 H 0.96998 * 120.00256 * 0.02562 * 9 8 7 41 41 H 0.97003 * 119.99921 * 180.02562 * 9 8 7 42 42 H 1.09002 * 109.58983 * 246.20470 * 14 13 11 43 43 H 1.08997 * 109.58868 * 6.63249 * 14 13 11 44 44 H 1.08998 * 109.63543 * 294.86317 * 15 14 13 45 45 H 1.09001 * 109.43528 * 174.72123 * 15 14 13 46 46 H 1.09001 * 109.45980 * 178.49248 * 16 15 14 47 47 H 1.08996 * 109.44550 * 58.52599 * 16 15 14 48 48 H 1.08998 * 109.49985 * 301.40714 * 17 16 15 49 49 H 1.09005 * 109.49690 * 181.31170 * 17 16 15 50 50 H 1.09005 * 109.47465 * 193.06649 * 20 18 13 51 51 H 1.09006 * 109.47300 * 313.06060 * 20 18 13 52 52 H 0.96997 * 119.99768 * 354.77201 * 21 20 18 53 53 H 0.96993 * 120.00204 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6457 3.4235 0.8423 7 7 3.6919 3.5406 -1.2513 8 6 4.1159 3.0459 -2.4311 9 7 3.7593 3.6494 -3.5822 10 8 4.8210 2.0556 -2.4568 11 6 5.5820 2.8867 0.1233 12 8 6.2712 3.0402 -0.8629 13 7 6.1594 2.7120 1.3284 14 6 5.3417 2.6414 2.5471 15 6 5.6966 1.3499 3.2993 16 6 7.2055 1.3118 3.5522 17 6 7.9486 1.3093 2.2144 18 6 7.6190 2.5948 1.4492 19 1 8.0109 3.4544 1.9930 20 6 8.2463 2.5404 0.0548 21 7 8.1871 3.8691 -0.5595 22 6 8.7862 4.0907 -1.7707 23 1 9.3021 3.2860 -2.2733 24 6 8.7296 5.3496 -2.3530 25 7 8.0996 6.3300 -1.7412 26 14 9.5475 5.6521 -4.0050 27 1 10.1836 4.3971 -4.4797 28 1 8.5266 6.0923 -4.9895 29 1 10.5820 6.7075 -3.8592 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9285 0.8891 39 1 3.1298 4.3309 -1.2307 40 1 3.1978 4.4400 -3.5616 41 1 4.0642 3.2931 -4.4313 42 1 5.5517 3.5047 3.1785 43 1 4.2855 2.6310 2.2783 44 1 5.4060 0.4861 2.7014 45 1 5.1674 1.3281 4.2520 46 1 7.4576 0.4095 4.1094 47 1 7.4990 2.1887 4.1290 48 1 7.6369 0.4459 1.6266 49 1 9.0225 1.2586 2.3948 50 1 9.2862 2.2238 0.1363 51 1 7.6976 1.8296 -0.5631 52 1 7.7234 4.5917 -0.1083 53 1 8.0597 7.2095 -2.1482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700346434.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:23 Heat of formation + Delta-G solvation = -53.930849 kcal Electronic energy + Delta-G solvation = -33287.983406 eV Core-core repulsion = 29194.975282 eV Total energy + Delta-G solvation = -4093.008125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76274 -40.35693 -37.95924 -37.29300 -36.17285 -35.03748 -34.36640 -33.62357 -33.49305 -31.50554 -31.12471 -28.07181 -27.20778 -25.63073 -24.30650 -23.75375 -23.13423 -22.21697 -21.58615 -21.23198 -19.73858 -19.53143 -18.88379 -18.07121 -17.42755 -16.86201 -16.68457 -16.47200 -16.02211 -15.69322 -15.42315 -15.25226 -15.16889 -15.07227 -14.88379 -14.78503 -14.63107 -14.14650 -14.04600 -13.79335 -13.61606 -13.38346 -13.31234 -13.08695 -12.84960 -12.67958 -12.51589 -12.13948 -12.11831 -12.02132 -11.92411 -11.85469 -11.69126 -11.66661 -11.42049 -11.41084 -11.27802 -10.94722 -10.80958 -10.44325 -10.25984 -9.34379 -9.20621 -8.56923 -7.82239 -4.98875 1.38991 1.40961 1.50952 1.91744 2.18207 2.41796 2.60907 2.63877 3.49563 3.65021 3.76004 3.88616 3.93640 3.96097 4.07497 4.11343 4.20322 4.21122 4.33345 4.40093 4.46984 4.49887 4.54367 4.59071 4.70431 4.80773 4.88322 4.88619 4.90769 5.03955 5.04708 5.09643 5.10667 5.18635 5.19190 5.26941 5.29189 5.35888 5.38519 5.46431 5.50441 5.54834 5.59346 5.67201 5.97858 6.02505 6.16298 6.38599 6.85188 7.27665 7.45447 7.81927 7.99230 8.25867 8.51174 9.42230 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.005029 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.519603 B = 5566.133120 C = 7812.555452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.102 4.102 4 C -0.118 4.118 5 C 0.160 3.840 6 H 0.135 0.865 7 N -0.721 5.721 8 C 0.705 3.295 9 N -0.860 5.860 10 O -0.614 6.614 11 C 0.444 3.556 12 O -0.470 6.470 13 N -0.617 5.617 14 C 0.101 3.899 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.119 4.119 18 C 0.151 3.849 19 H 0.056 0.944 20 C 0.169 3.831 21 N -0.693 5.693 22 C -0.203 4.203 23 H 0.048 0.952 24 C -0.079 4.079 25 N -0.967 5.967 26 Si 0.961 3.039 27 H -0.281 1.281 28 H -0.297 1.297 29 H -0.290 1.290 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.410 0.590 40 H 0.407 0.593 41 H 0.411 0.589 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.074 0.926 50 H 0.004 0.996 51 H 0.006 0.994 52 H 0.368 0.632 53 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.666 -9.777 13.390 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.139 4.139 4 C -0.157 4.157 5 C 0.050 3.950 6 H 0.153 0.847 7 N -0.378 5.378 8 C 0.404 3.596 9 N -0.429 5.429 10 O -0.493 6.493 11 C 0.228 3.772 12 O -0.338 6.338 13 N -0.356 5.356 14 C -0.021 4.021 15 C -0.165 4.165 16 C -0.149 4.149 17 C -0.158 4.158 18 C 0.047 3.953 19 H 0.074 0.926 20 C 0.042 3.958 21 N -0.334 5.334 22 C -0.336 4.336 23 H 0.066 0.934 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.792 3.208 27 H -0.206 1.206 28 H -0.224 1.224 29 H -0.217 1.217 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.246 0.754 40 H 0.237 0.763 41 H 0.242 0.758 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.022 0.978 51 H 0.024 0.976 52 H 0.200 0.800 53 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.600 -10.606 12.803 24.211 hybrid contribution 0.430 1.247 -1.803 2.234 sum -17.170 -9.358 11.001 22.437 Atomic orbital electron populations 1.21736 0.94776 1.01862 1.02103 1.21497 0.96605 0.96593 1.01454 1.21490 0.92592 0.97228 1.02636 1.21833 0.97283 0.93727 1.02875 1.20872 0.90840 0.96483 0.86800 0.84727 1.44514 1.56195 1.33467 1.03581 1.16098 0.78909 0.82906 0.81734 1.42777 1.58615 1.34452 1.07041 1.90912 1.41827 1.29851 1.86676 1.21719 0.92007 0.79333 0.84109 1.91261 1.62404 1.42549 1.37625 1.48076 1.05807 1.74789 1.06910 1.22100 0.95780 0.98936 0.85284 1.21984 0.96236 0.96960 1.01351 1.21481 0.95258 1.03055 0.95090 1.21846 1.01130 0.95575 0.97268 1.21192 0.80936 0.98122 0.95034 0.92560 1.20774 0.94586 0.88498 0.91913 1.42150 1.63508 1.07003 1.20713 1.19400 1.23114 0.93976 0.97144 0.93444 1.25200 1.03738 0.96179 1.01842 1.69814 1.50646 1.01366 1.40279 0.85218 0.77516 0.77069 0.80962 1.20607 1.22438 1.21713 0.92550 0.91452 0.93295 0.94295 0.91215 0.89460 0.92889 0.93288 0.89990 0.75406 0.76334 0.75768 0.90943 0.87992 0.92030 0.87847 0.90001 0.91312 0.92742 0.90786 0.97795 0.97598 0.80039 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -2.09 5.93 30.59 0.18 -1.90 16 3 C -0.10 -1.78 5.10 30.59 0.16 -1.63 16 4 C -0.12 -2.92 4.30 30.59 0.13 -2.79 16 5 C 0.16 4.39 2.16 44.25 0.10 4.48 16 6 H 0.14 2.54 6.55 -2.39 -0.02 2.53 16 7 N -0.72 -21.03 4.66 -461.41 -2.15 -23.18 16 8 C 0.71 26.41 7.59 179.06 1.36 27.77 16 9 N -0.86 -25.37 8.88 -184.75 -1.64 -27.01 16 10 O -0.61 -29.64 13.03 18.46 0.24 -29.40 16 11 C 0.44 17.09 6.30 87.66 0.55 17.64 16 12 O -0.47 -24.39 7.40 19.42 0.14 -24.25 16 13 N -0.62 -19.52 2.97 -794.21 -2.36 -21.88 16 14 C 0.10 1.95 5.89 86.51 0.51 2.46 16 15 C -0.13 -1.95 6.10 30.82 0.19 -1.76 16 16 C -0.11 -2.01 5.88 30.62 0.18 -1.83 16 17 C -0.12 -3.19 5.35 30.67 0.16 -3.03 16 18 C 0.15 5.43 2.90 44.97 0.13 5.56 16 19 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 20 C 0.17 8.26 4.90 86.38 0.42 8.68 16 21 N -0.69 -40.44 3.20 -343.45 -1.10 -41.54 16 22 C -0.20 -13.13 9.73 84.04 0.82 -12.31 16 23 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 24 C -0.08 -5.03 5.50 84.86 0.47 -4.57 16 25 N -0.97 -63.71 13.06 21.65 0.28 -63.43 16 26 Si 0.96 51.92 29.55 68.60 2.03 53.95 16 27 H -0.28 -14.83 7.11 99.48 0.71 -14.12 16 28 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 29 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.03 7.75 -2.39 -0.02 1.02 16 37 H 0.05 1.71 6.04 -2.39 -0.01 1.70 16 38 H 0.08 1.77 7.29 -2.39 -0.02 1.76 16 39 H 0.41 8.96 8.84 -92.71 -0.82 8.14 16 40 H 0.41 8.76 8.84 -92.71 -0.82 7.94 16 41 H 0.41 12.03 8.93 -92.71 -0.83 11.20 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 1.46 5.07 -2.39 -0.01 1.45 16 44 H 0.06 1.04 8.05 -2.39 -0.02 1.02 16 45 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 50 H 0.00 0.21 8.09 -2.38 -0.02 0.19 16 51 H 0.01 0.35 6.36 -2.38 -0.02 0.34 16 52 H 0.37 22.60 7.22 -92.71 -0.67 21.93 16 53 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -92.36 402.62 -0.67 -93.03 By element: Atomic # 1 Polarization: 50.38 SS G_CDS: -2.19 Total: 48.19 kcal Atomic # 6 Polarization: 29.45 SS G_CDS: 6.07 Total: 35.51 kcal Atomic # 7 Polarization: -170.08 SS G_CDS: -6.96 Total: -177.04 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: 0.38 Total: -53.65 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.03 Total: 53.95 kcal Total: -92.36 -0.67 -93.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700346434.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.100 kcal (2) G-P(sol) polarization free energy of solvation -92.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds