Wall clock time and date at job start Sat Apr 11 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47256 * 2 1 4 4 C 1.53000 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47012 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.47751 * 54.99950 * 5 4 3 7 7 C 1.52997 * 109.47351 * 175.00015 * 5 4 3 8 8 N 1.46503 * 109.47672 * 174.99590 * 7 5 4 9 9 C 1.36934 * 120.00062 * 179.97438 * 8 7 5 10 10 H 1.08002 * 119.99926 * 0.02562 * 9 8 7 11 11 C 1.38805 * 119.99775 * 179.72839 * 9 8 7 12 12 N 1.31625 * 120.00243 * 0.27766 * 11 9 8 13 13 Si 1.86800 * 120.00088 * 180.27920 * 11 9 8 14 14 H 1.48501 * 109.47475 * 59.99850 * 13 11 9 15 15 H 1.48497 * 109.47504 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47246 * 299.99792 * 13 11 9 17 17 N 1.46502 * 109.47124 * 294.99758 * 5 4 3 18 18 C 1.34782 * 119.99842 * 85.00081 * 17 5 4 19 19 O 1.21275 * 119.99931 * 0.02562 * 18 17 5 20 20 C 1.50703 * 119.99727 * 179.97438 * 18 17 5 21 21 H 1.09000 * 109.58703 * 349.52052 * 20 18 17 22 22 C 1.53196 * 109.58312 * 109.95053 * 20 18 17 23 23 C 1.53034 * 109.31212 * 174.42055 * 22 20 18 24 24 C 1.53046 * 109.53898 * 298.63385 * 23 22 20 25 25 C 1.53192 * 109.31018 * 61.36336 * 24 23 22 26 26 N 1.46920 * 108.77960 * 305.36600 * 25 24 23 27 27 C 1.34778 * 120.63217 * 233.63259 * 26 25 24 28 28 N 1.34773 * 119.99816 * 5.15739 * 27 26 25 29 29 O 1.21586 * 119.99878 * 185.15182 * 27 26 25 30 30 H 1.08996 * 109.47259 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47336 * 299.99986 * 1 2 3 32 32 H 1.09001 * 109.46819 * 59.99501 * 1 2 3 33 33 H 1.09005 * 109.46990 * 240.00676 * 2 1 3 34 34 H 1.08994 * 109.47344 * 120.00089 * 2 1 3 35 35 H 1.09009 * 109.46960 * 60.00115 * 3 2 1 36 36 H 1.09001 * 109.47356 * 300.00498 * 3 2 1 37 37 H 1.08992 * 109.46851 * 60.00360 * 4 3 2 38 38 H 1.08995 * 109.46818 * 300.00083 * 4 3 2 39 39 H 1.09006 * 109.46992 * 54.99403 * 7 5 4 40 40 H 1.09002 * 109.47414 * 294.99806 * 7 5 4 41 41 H 0.96997 * 119.99663 * 0.02562 * 8 7 5 42 42 H 0.96998 * 120.00032 * 180.02562 * 12 11 9 43 43 H 0.96997 * 120.00208 * 264.99699 * 17 5 4 44 44 H 1.09001 * 109.49487 * 294.36858 * 22 20 18 45 45 H 1.08999 * 109.49585 * 54.46984 * 22 20 18 46 46 H 1.08997 * 109.46326 * 178.61505 * 23 22 20 47 47 H 1.09003 * 109.45103 * 58.64703 * 23 22 20 48 48 H 1.08994 * 109.49252 * 301.41253 * 24 23 22 49 49 H 1.08998 * 109.49409 * 181.31309 * 24 23 22 50 50 H 1.09004 * 109.58338 * 185.57941 * 25 24 23 51 51 H 1.09007 * 109.70263 * 65.22579 * 25 24 23 52 52 H 0.96994 * 120.00187 * 4.92431 * 28 27 26 53 53 H 0.97001 * 119.99787 * 184.92694 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6450 3.4239 0.8431 7 6 5.6047 2.8869 0.1276 8 7 6.1031 4.2593 0.0084 9 6 7.4468 4.5095 0.0912 10 1 8.1393 3.6949 0.2440 11 6 7.9194 5.8092 -0.0274 12 7 7.0755 6.8019 -0.2140 13 14 9.7531 6.1496 0.0778 14 1 10.4563 5.4123 -1.0026 15 1 9.9960 7.6062 -0.0786 16 1 10.2650 5.7009 1.3976 17 7 3.6930 3.5403 -1.2505 18 6 2.4757 4.1073 -1.3660 19 8 1.7009 4.0753 -0.4336 20 6 2.0778 4.7819 -2.6536 21 1 2.9498 4.8775 -3.3006 22 6 1.0009 3.9503 -3.3575 23 6 0.5020 4.7076 -4.5902 24 6 -0.1205 6.0369 -4.1572 25 6 0.9438 6.8921 -3.4623 26 7 1.5316 6.1145 -2.3630 27 6 1.5686 6.6140 -1.1117 28 7 0.9718 7.7910 -0.8380 29 8 2.1403 6.0027 -0.2298 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8899 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9288 0.8908 39 1 6.0357 2.2738 -0.6640 40 1 5.8895 2.4800 1.0980 41 1 5.4811 4.9909 -0.1285 42 1 7.4057 7.7101 -0.2973 43 1 4.3128 3.5663 -1.9962 44 1 1.4230 2.9934 -3.6645 45 1 0.1689 3.7792 -2.6743 46 1 -0.2469 4.1072 -5.1068 47 1 1.3391 4.9001 -5.2613 48 1 -0.9418 5.8461 -3.4665 49 1 -0.4964 6.5651 -5.0334 50 1 0.4833 7.7966 -3.0647 51 1 1.7222 7.1618 -4.1761 52 1 0.4553 8.2437 -1.5229 53 1 1.0588 8.1854 0.0439 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700522486.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:37 Heat of formation + Delta-G solvation = -75.222833 kcal Electronic energy + Delta-G solvation = -32586.318782 eV Core-core repulsion = 28492.387368 eV Total energy + Delta-G solvation = -4093.931414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96932 -40.09349 -38.35058 -37.59530 -36.24335 -35.00897 -34.78735 -33.32507 -33.01191 -32.19463 -31.32316 -28.70874 -26.66973 -25.80856 -24.77045 -23.73979 -22.76759 -22.02145 -21.77554 -21.21986 -20.39853 -19.50970 -19.00391 -17.97279 -17.54846 -17.20107 -16.77279 -16.49973 -16.05274 -15.83011 -15.70586 -15.39765 -15.27578 -15.23869 -14.96429 -14.61108 -14.48638 -14.27762 -14.22561 -13.97884 -13.84003 -13.40198 -13.21444 -13.12853 -12.84026 -12.75336 -12.48986 -12.45236 -12.17402 -12.09692 -12.00069 -11.83560 -11.82880 -11.68880 -11.61151 -11.38937 -11.36227 -10.96428 -10.76012 -10.60225 -10.25507 -9.65567 -9.37257 -8.99799 -7.91362 -5.22551 1.45585 1.49931 1.55750 1.57393 2.17048 2.34677 2.52857 2.56456 3.35133 3.40658 3.65957 3.79009 3.85570 3.92853 4.07504 4.09246 4.12436 4.16102 4.25340 4.31365 4.35551 4.40255 4.51587 4.58132 4.61625 4.64596 4.86738 4.88696 4.90051 4.91743 4.96786 4.99984 5.05609 5.11752 5.12718 5.16005 5.20688 5.27771 5.34711 5.45631 5.46383 5.49180 5.54357 5.61651 5.83135 5.85947 6.06705 6.26874 6.84762 7.01271 7.33587 7.61189 7.86608 8.09365 8.34171 9.30946 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.004434 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.509374 B = 6313.448643 C = 8584.855433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.115 4.115 5 C 0.158 3.842 6 H 0.039 0.961 7 C 0.146 3.854 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.079 0.921 11 C -0.076 4.076 12 N -0.967 5.967 13 Si 0.977 3.023 14 H -0.272 1.272 15 H -0.297 1.297 16 H -0.281 1.281 17 N -0.712 5.712 18 C 0.521 3.479 19 O -0.534 6.534 20 C 0.144 3.856 21 H 0.091 0.909 22 C -0.112 4.112 23 C -0.113 4.113 24 C -0.130 4.130 25 C 0.105 3.895 26 N -0.619 5.619 27 C 0.681 3.319 28 N -0.854 5.854 29 O -0.599 6.599 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.374 0.626 42 H 0.248 0.752 43 H 0.399 0.601 44 H 0.089 0.911 45 H 0.055 0.945 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.059 0.941 49 H 0.107 0.893 50 H 0.097 0.903 51 H 0.081 0.919 52 H 0.407 0.593 53 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.602 -5.853 -13.098 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.136 4.136 4 C -0.154 4.154 5 C 0.052 3.948 6 H 0.057 0.943 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.380 4.380 10 H 0.097 0.903 11 C -0.268 4.268 12 N -0.618 5.618 13 Si 0.806 3.194 14 H -0.198 1.198 15 H -0.223 1.223 16 H -0.207 1.207 17 N -0.364 5.364 18 C 0.308 3.692 19 O -0.410 6.410 20 C 0.036 3.964 21 H 0.109 0.891 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.168 4.168 25 C -0.016 4.016 26 N -0.360 5.360 27 C 0.381 3.619 28 N -0.426 5.426 29 O -0.476 6.476 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.206 0.794 42 H 0.057 0.943 43 H 0.234 0.766 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.106 0.894 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.125 0.875 50 H 0.115 0.885 51 H 0.099 0.901 52 H 0.241 0.759 53 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -18.583 -6.442 -11.924 23.000 hybrid contribution 1.024 1.484 0.396 1.846 sum -17.559 -4.958 -11.528 21.582 Atomic orbital electron populations 1.21719 0.95751 1.01823 1.01136 1.21543 0.96061 0.95778 1.02332 1.21489 0.94554 0.96556 1.01037 1.21896 0.96159 0.94147 1.03187 1.20885 0.93551 0.93681 0.86646 0.94257 1.21098 0.91386 0.86888 0.98700 1.42568 1.04525 1.03804 1.87636 1.19640 0.84954 0.92859 1.40499 0.90336 1.25624 1.02104 0.95569 1.03481 1.69905 1.34753 0.98964 1.58143 0.85167 0.79910 0.76185 0.78176 1.19822 1.22342 1.20680 1.45729 1.16039 1.58527 1.16113 1.20174 0.82065 0.77850 0.89130 1.90651 1.52649 1.57264 1.40394 1.21060 0.98196 0.83155 0.94023 0.89110 1.21809 0.96830 0.98657 0.97812 1.21522 1.01653 0.96143 0.95730 1.21938 0.97169 0.96410 1.01305 1.22001 0.96863 0.94383 0.88367 1.47008 1.64662 1.17250 1.07036 1.16388 0.80281 0.82091 0.83142 1.42918 1.57980 1.22794 1.18883 1.91202 1.49628 1.59474 1.47339 0.91288 0.94065 0.93269 0.91031 0.91855 0.95017 0.92949 0.90021 0.90596 0.94074 0.95385 0.79448 0.94332 0.76650 0.89242 0.92622 0.89381 0.90282 0.92252 0.87517 0.88522 0.90053 0.75937 0.75508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.12 -2.75 5.93 30.59 0.18 -2.57 16 3 C -0.10 -2.99 3.82 30.59 0.12 -2.87 16 4 C -0.11 -3.46 4.89 30.59 0.15 -3.31 16 5 C 0.16 6.17 2.42 44.99 0.11 6.28 16 6 H 0.04 1.91 7.58 -2.38 -0.02 1.89 16 7 C 0.15 6.29 5.82 86.38 0.50 6.79 16 8 N -0.74 -40.63 5.43 -343.45 -1.87 -42.50 16 9 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 10 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 11 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 12 N -0.97 -62.38 13.06 21.65 0.28 -62.10 16 13 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 17 N -0.71 -26.25 4.47 -442.53 -1.98 -28.23 16 18 C 0.52 19.37 3.54 87.66 0.31 19.68 16 19 O -0.53 -23.57 10.82 21.59 0.23 -23.33 16 20 C 0.14 4.04 3.30 44.23 0.15 4.19 16 21 H 0.09 2.39 7.96 -2.39 -0.02 2.37 16 22 C -0.11 -2.27 5.35 30.67 0.16 -2.10 16 23 C -0.11 -1.43 5.88 30.62 0.18 -1.25 16 24 C -0.13 -1.53 6.08 30.67 0.19 -1.34 16 25 C 0.11 1.70 6.43 86.36 0.56 2.26 16 26 N -0.62 -17.09 2.97 -817.05 -2.43 -19.52 16 27 C 0.68 24.38 8.19 179.06 1.47 25.84 16 28 N -0.85 -21.63 8.77 -184.75 -1.62 -23.25 16 29 O -0.60 -29.14 12.37 20.62 0.25 -28.89 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.03 1.16 7.85 -2.38 -0.02 1.14 16 36 H 0.05 1.70 5.65 -2.39 -0.01 1.69 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.37 22.78 7.33 -92.71 -0.68 22.10 16 42 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.40 13.88 8.47 -92.71 -0.79 13.10 16 44 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.10 1.15 5.58 -2.38 -0.01 1.13 16 51 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 52 H 0.41 6.65 6.32 -92.71 -0.59 6.07 16 53 H 0.41 10.43 8.93 -92.71 -0.83 9.60 16 Total: -1.00 -85.76 407.90 -0.95 -86.71 By element: Atomic # 1 Polarization: 61.97 SS G_CDS: -1.95 Total: 60.03 kcal Atomic # 6 Polarization: 25.40 SS G_CDS: 6.09 Total: 31.49 kcal Atomic # 7 Polarization: -167.99 SS G_CDS: -7.61 Total: -175.60 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: 0.49 Total: -52.22 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -85.76 -0.95 -86.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700522486.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.485 kcal (2) G-P(sol) polarization free energy of solvation -85.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds