Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46792 * 2 1 4 4 C 1.52999 * 109.46980 * 240.00267 * 2 1 3 5 5 C 1.52992 * 109.47008 * 120.00111 * 2 1 3 6 6 H 1.09002 * 109.47172 * 301.21908 * 5 2 1 7 7 N 1.46507 * 109.46963 * 181.22461 * 5 2 1 8 8 C 1.34768 * 120.00102 * 84.99996 * 7 5 2 9 9 N 1.34780 * 120.00182 * 180.02562 * 8 7 5 10 10 O 1.21591 * 120.00267 * 359.97438 * 8 7 5 11 11 C 1.50704 * 109.47622 * 61.22339 * 5 2 1 12 12 O 1.21278 * 120.00136 * 105.10162 * 11 5 2 13 13 N 1.34779 * 119.99591 * 285.10722 * 11 5 2 14 14 C 1.46496 * 119.99550 * 183.91732 * 13 11 5 15 15 C 1.53003 * 109.46907 * 183.71940 * 14 13 11 16 16 H 1.09006 * 109.69840 * 52.72039 * 15 14 13 17 17 C 1.52754 * 109.51167 * 292.60212 * 15 14 13 18 18 C 1.53048 * 109.38489 * 185.70347 * 17 15 14 19 19 C 1.53043 * 109.53383 * 61.24029 * 18 17 15 20 20 C 1.53190 * 109.31333 * 298.63531 * 19 18 17 21 21 N 1.46923 * 109.58732 * 173.07188 * 15 14 13 22 22 C 1.36944 * 120.63027 * 353.42482 * 21 15 14 23 23 H 1.07999 * 120.00039 * 35.66451 * 22 21 15 24 24 C 1.38815 * 119.99659 * 215.67066 * 22 21 15 25 25 N 1.31615 * 120.00130 * 15.51223 * 24 22 21 26 26 Si 1.86800 * 119.99568 * 195.50645 * 24 22 21 27 27 H 1.48500 * 109.47135 * 184.99753 * 26 24 22 28 28 H 1.48497 * 109.47522 * 305.00094 * 26 24 22 29 29 H 1.48503 * 109.46827 * 65.00241 * 26 24 22 30 30 H 1.09001 * 109.46838 * 305.52465 * 1 2 3 31 31 H 1.08992 * 109.47252 * 65.52523 * 1 2 3 32 32 H 1.09001 * 109.46660 * 185.52661 * 1 2 3 33 33 H 1.09004 * 109.46414 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47348 * 299.99830 * 3 2 1 35 35 H 1.08996 * 109.46930 * 60.00363 * 3 2 1 36 36 H 1.09005 * 109.47022 * 299.99644 * 4 2 1 37 37 H 1.08993 * 109.47348 * 59.99398 * 4 2 1 38 38 H 1.09001 * 109.46860 * 180.02562 * 4 2 1 39 39 H 0.97003 * 119.99817 * 264.99536 * 7 5 2 40 40 H 0.97003 * 119.99737 * 359.97438 * 9 8 7 41 41 H 0.96997 * 120.00308 * 179.97438 * 9 8 7 42 42 H 0.96996 * 119.99971 * 3.91925 * 13 11 5 43 43 H 1.09000 * 109.47463 * 63.72234 * 14 13 11 44 44 H 1.09004 * 109.47280 * 303.72033 * 14 13 11 45 45 H 1.08999 * 109.56385 * 65.67038 * 17 15 14 46 46 H 1.09000 * 109.39095 * 305.63014 * 17 15 14 47 47 H 1.08994 * 109.45963 * 301.22226 * 18 17 15 48 48 H 1.08992 * 109.45018 * 181.25271 * 18 17 15 49 49 H 1.08993 * 109.49483 * 178.68534 * 19 18 17 50 50 H 1.09002 * 109.49744 * 58.58532 * 19 18 17 51 51 H 1.08996 * 109.58691 * 294.85065 * 20 19 18 52 52 H 1.09002 * 109.70522 * 174.49608 * 20 19 18 53 53 H 0.97002 * 120.00020 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.6589 -0.2202 2.1390 7 7 3.5048 -0.6957 1.2640 8 6 4.1551 0.3700 1.7715 9 7 5.5026 0.3937 1.7847 10 8 3.5262 1.3106 2.2167 11 6 1.5627 -2.1506 1.2342 12 8 2.3359 -3.0454 0.9655 13 7 0.2763 -2.4344 1.5193 14 6 -0.1680 -3.8286 1.5890 15 6 -1.6776 -3.8711 1.8342 16 1 -2.1880 -3.2585 1.0908 17 6 -1.9830 -3.3344 3.2313 18 6 -3.4742 -3.5096 3.5281 19 6 -3.8319 -4.9972 3.4914 20 6 -3.5490 -5.5519 2.0917 21 7 -2.1531 -5.2581 1.7398 22 6 -1.3097 -6.2589 1.3371 23 1 -0.2680 -6.2342 1.6211 24 6 -1.7936 -7.3052 0.5638 25 7 -2.9599 -7.1954 -0.0362 26 14 -0.7895 -8.8690 0.3746 27 1 -1.4627 -9.7760 -0.5893 28 1 0.5656 -8.5293 -0.1289 29 1 -0.6731 -9.5448 1.6918 30 1 -0.3633 0.5971 0.8364 31 1 -0.3633 0.4257 -0.9352 32 1 -0.3633 -1.0229 0.0990 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7216 -1.2490 39 1 4.0066 -1.4460 0.9086 40 1 6.0044 -0.3565 1.4292 41 1 5.9707 1.1609 2.1496 42 1 -0.3552 -1.7155 1.6783 43 1 0.3471 -4.3337 2.4062 44 1 0.0618 -4.3307 0.6492 45 1 -1.7241 -2.2768 3.2807 46 1 -1.3983 -3.8868 3.9670 47 1 -4.0587 -2.9769 2.7781 48 1 -3.6974 -3.1068 4.5160 49 1 -4.8889 -5.1230 3.7258 50 1 -3.2297 -5.5344 4.2241 51 1 -4.2150 -5.0792 1.3699 52 1 -3.7086 -6.6301 2.0845 53 1 -3.2983 -7.9267 -0.5763 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713256408.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -82.285710 kcal Electronic energy + Delta-G solvation = -32133.788361 eV Core-core repulsion = 28039.550677 eV Total energy + Delta-G solvation = -4094.237684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01558 -40.44500 -39.40272 -37.82531 -36.07999 -34.95707 -34.89738 -33.82802 -32.62879 -31.65820 -29.03020 -28.22538 -27.84313 -27.22206 -26.31962 -23.88014 -22.46705 -22.23024 -21.84097 -20.76049 -20.10127 -19.63032 -18.72790 -18.16482 -17.54070 -17.21784 -16.93788 -16.67955 -16.17216 -15.86114 -15.79398 -15.43321 -15.19375 -15.04332 -14.97755 -14.64130 -14.51776 -14.31568 -14.18991 -14.02132 -13.83586 -13.33905 -13.04173 -12.93547 -12.80829 -12.80619 -12.55317 -12.48899 -12.44165 -12.26226 -12.05331 -11.87488 -11.81650 -11.73150 -11.54069 -11.33868 -11.17109 -10.96517 -10.93367 -10.58714 -10.54004 -10.09387 -9.96367 -8.55528 -7.87461 -5.40027 1.45293 1.45618 1.47328 1.52290 1.67631 2.15986 2.33099 2.51042 3.27233 3.47200 3.60845 3.69359 3.74834 3.85315 3.97497 4.07717 4.15084 4.21477 4.33124 4.38254 4.49511 4.49872 4.62750 4.71428 4.79274 4.80818 4.90232 4.92682 5.00527 5.03464 5.07314 5.11326 5.14039 5.17865 5.25417 5.28810 5.30954 5.34933 5.42729 5.42837 5.46826 5.49877 5.57140 5.70576 5.78883 5.85258 6.07988 6.42526 6.46752 7.03187 7.13621 7.17177 7.66510 7.84904 8.39938 9.17029 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.003176 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.203403 B = 8812.643662 C = 9690.276505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.067 4.067 3 C -0.116 4.116 4 C -0.139 4.139 5 C 0.164 3.836 6 H 0.114 0.886 7 N -0.723 5.723 8 C 0.707 3.293 9 N -0.850 5.850 10 O -0.623 6.623 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.705 5.705 14 C 0.146 3.854 15 C 0.165 3.835 16 H 0.028 0.972 17 C -0.124 4.124 18 C -0.104 4.104 19 C -0.135 4.135 20 C 0.182 3.818 21 N -0.599 5.599 22 C -0.263 4.263 23 H 0.060 0.940 24 C -0.035 4.035 25 N -0.926 5.926 26 Si 0.953 3.047 27 H -0.292 1.292 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.409 0.591 40 H 0.411 0.589 41 H 0.423 0.577 42 H 0.414 0.586 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.084 0.916 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.048 0.952 51 H 0.000 1.000 52 H 0.038 0.962 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.013 18.004 3.312 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.069 4.069 3 C -0.174 4.174 4 C -0.196 4.196 5 C 0.054 3.946 6 H 0.131 0.869 7 N -0.381 5.381 8 C 0.405 3.595 9 N -0.419 5.419 10 O -0.504 6.504 11 C 0.300 3.700 12 O -0.450 6.450 13 N -0.360 5.360 14 C 0.022 3.978 15 C 0.059 3.941 16 H 0.046 0.954 17 C -0.163 4.163 18 C -0.142 4.142 19 C -0.174 4.174 20 C 0.056 3.944 21 N -0.324 5.324 22 C -0.393 4.393 23 H 0.077 0.923 24 C -0.232 4.232 25 N -0.570 5.570 26 Si 0.781 3.219 27 H -0.218 1.218 28 H -0.205 1.205 29 H -0.205 1.205 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.246 0.754 40 H 0.241 0.759 41 H 0.256 0.744 42 H 0.253 0.747 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.066 0.934 51 H 0.019 0.981 52 H 0.056 0.944 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.819 17.928 3.367 20.717 hybrid contribution 0.684 -1.656 -0.618 1.895 sum 10.504 16.273 2.749 19.562 Atomic orbital electron populations 1.22219 0.92837 1.02723 1.04252 1.20861 0.96769 0.96287 0.93004 1.21742 1.00458 0.93331 1.01831 1.21849 1.01275 0.99200 0.97316 1.20671 0.81279 0.91163 1.01494 0.86876 1.44703 1.05722 1.21265 1.66371 1.15935 0.83100 0.82269 0.78226 1.42795 1.04045 1.26196 1.68842 1.90950 1.67241 1.37372 1.54880 1.20843 0.82245 0.91180 0.75732 1.90683 1.55359 1.49464 1.49514 1.46139 1.10218 1.09038 1.70604 1.21133 0.94905 0.81135 1.00626 1.20611 0.91104 0.86761 0.95656 0.95407 1.21944 0.97071 1.00738 0.96531 1.21369 0.95684 0.95392 1.01737 1.22040 1.00348 0.97180 0.97800 1.20519 0.84118 0.97855 0.91862 1.44087 1.08778 1.01983 1.77535 1.19202 0.93188 1.01518 1.25402 0.92288 1.25834 0.98281 1.02751 0.96336 1.70143 1.21394 1.32068 1.33412 0.85578 0.78484 0.80430 0.77404 1.21825 1.20465 1.20484 0.90201 0.90633 0.92471 0.93621 0.92019 0.92300 0.94635 0.91156 0.92348 0.75412 0.75901 0.74377 0.74696 0.93119 0.93539 0.89737 0.92992 0.92236 0.90418 0.91417 0.93361 0.98144 0.94381 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 7.66 71.99 0.55 -2.38 16 2 C -0.07 -1.35 0.62 -52.18 -0.03 -1.38 16 3 C -0.12 -2.27 6.98 71.98 0.50 -1.77 16 4 C -0.14 -3.00 8.07 71.98 0.58 -2.42 16 5 C 0.16 3.72 1.98 44.24 0.09 3.81 16 6 H 0.11 2.54 7.58 -2.39 -0.02 2.52 16 7 N -0.72 -15.06 4.19 -461.41 -1.93 -16.99 16 8 C 0.71 14.54 7.15 179.06 1.28 15.82 16 9 N -0.85 -10.18 8.88 -184.74 -1.64 -11.82 16 10 O -0.62 -16.82 14.30 -4.00 -0.06 -16.88 16 11 C 0.51 14.84 5.48 87.66 0.48 15.32 16 12 O -0.57 -20.64 15.80 -3.02 -0.05 -20.69 16 13 N -0.71 -19.88 4.20 -463.05 -1.94 -21.82 16 14 C 0.15 5.49 3.87 86.38 0.33 5.82 16 15 C 0.16 6.27 2.97 44.83 0.13 6.40 16 16 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 17 C -0.12 -3.71 5.17 30.53 0.16 -3.55 16 18 C -0.10 -3.01 5.89 30.62 0.18 -2.83 16 19 C -0.13 -4.75 6.08 30.67 0.19 -4.56 16 20 C 0.18 8.45 5.27 86.36 0.46 8.91 16 21 N -0.60 -28.81 2.95 -676.03 -1.99 -30.80 16 22 C -0.26 -14.18 8.23 84.03 0.69 -13.49 16 23 H 0.06 3.20 6.58 -2.91 -0.02 3.18 16 24 C -0.03 -1.94 4.90 84.86 0.42 -1.53 16 25 N -0.93 -54.32 11.71 21.65 0.25 -54.06 16 26 Si 0.95 45.38 29.58 68.60 2.03 47.41 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 29 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.20 5.07 -2.39 -0.01 1.19 16 33 H 0.04 0.97 5.81 -2.38 -0.01 0.96 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.26 7.44 -2.39 -0.02 1.25 16 36 H 0.03 0.95 7.13 -2.38 -0.02 0.93 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.20 7.64 -2.39 -0.02 1.19 16 39 H 0.41 8.26 7.73 -92.71 -0.72 7.55 16 40 H 0.41 2.91 8.84 -92.71 -0.82 2.09 16 41 H 0.42 3.91 8.93 -92.71 -0.83 3.08 16 42 H 0.41 9.18 5.72 -92.71 -0.53 8.65 16 43 H 0.05 2.05 7.78 -2.39 -0.02 2.03 16 44 H 0.05 2.12 7.26 -2.38 -0.02 2.10 16 45 H 0.08 1.92 7.41 -2.39 -0.02 1.91 16 46 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 47 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 52 H 0.04 2.01 6.62 -2.39 -0.02 1.99 16 53 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -71.23 398.64 -1.27 -72.50 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -1.94 Total: 31.01 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 6.01 Total: 22.16 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -7.25 Total: -135.50 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.10 Total: -37.57 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.23 -1.27 -72.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713256408.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.790 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds