Wall clock time and date at job start Sat Apr 11 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47231 * 2 1 4 4 C 1.52995 * 109.46877 * 239.99453 * 2 1 3 5 5 C 1.52998 * 109.46747 * 119.99904 * 2 1 3 6 6 H 1.09005 * 109.47185 * 294.85694 * 5 2 1 7 7 N 1.46503 * 109.47094 * 174.85960 * 5 2 1 8 8 C 1.34774 * 120.00063 * 85.00125 * 7 5 2 9 9 N 1.34772 * 119.99808 * 179.97438 * 8 7 5 10 10 O 1.21582 * 120.00219 * 359.97438 * 8 7 5 11 11 C 1.50703 * 109.47488 * 54.85688 * 5 2 1 12 12 O 1.21281 * 119.99983 * 109.89653 * 11 5 2 13 13 N 1.34773 * 119.99982 * 289.90235 * 11 5 2 14 14 C 1.46498 * 120.00210 * 176.41780 * 13 11 5 15 15 C 1.53000 * 109.47456 * 180.02562 * 14 13 11 16 16 H 1.09003 * 109.70099 * 61.56766 * 15 14 13 17 17 C 1.53626 * 109.66503 * 182.15843 * 15 14 13 18 18 C 1.53041 * 109.24049 * 174.55267 * 17 15 14 19 19 C 1.53039 * 109.53304 * 298.50581 * 18 17 15 20 20 C 1.53197 * 109.31276 * 61.37051 * 19 18 17 21 21 N 1.46917 * 108.77310 * 305.36112 * 20 19 18 22 22 C 1.36936 * 120.63208 * 233.58480 * 21 20 19 23 23 H 1.08001 * 120.00167 * 149.28912 * 22 21 20 24 24 C 1.38816 * 119.99778 * 329.29418 * 22 21 20 25 25 N 1.31618 * 120.00162 * 348.47282 * 24 22 21 26 26 Si 1.86799 * 119.99765 * 168.47620 * 24 22 21 27 27 H 1.48501 * 109.46957 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47218 * 299.99719 * 26 24 22 29 29 H 1.48496 * 109.47248 * 59.99961 * 26 24 22 30 30 H 1.08998 * 109.47088 * 306.29505 * 1 2 3 31 31 H 1.09008 * 109.46893 * 66.29069 * 1 2 3 32 32 H 1.08998 * 109.47629 * 186.28836 * 1 2 3 33 33 H 1.09009 * 109.47157 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47172 * 299.99388 * 3 2 1 35 35 H 1.09004 * 109.47638 * 59.99964 * 3 2 1 36 36 H 1.08999 * 109.47634 * 300.00229 * 4 2 1 37 37 H 1.09002 * 109.47272 * 60.00767 * 4 2 1 38 38 H 1.09009 * 109.46912 * 180.02562 * 4 2 1 39 39 H 0.96997 * 119.99326 * 264.99536 * 7 5 2 40 40 H 0.97000 * 120.00330 * 0.02562 * 9 8 7 41 41 H 0.97003 * 119.99764 * 179.97438 * 9 8 7 42 42 H 0.97004 * 120.00101 * 356.41910 * 13 11 5 43 43 H 1.09001 * 109.47084 * 59.99546 * 14 13 11 44 44 H 1.09005 * 109.47289 * 300.00128 * 14 13 11 45 45 H 1.08993 * 109.63811 * 54.55563 * 17 15 14 46 46 H 1.09007 * 109.45328 * 294.43357 * 17 15 14 47 47 H 1.09005 * 109.45904 * 178.49305 * 18 17 15 48 48 H 1.08999 * 109.45373 * 58.52305 * 18 17 15 49 49 H 1.08995 * 109.49981 * 301.41349 * 19 18 17 50 50 H 1.09007 * 109.52073 * 181.33507 * 19 18 17 51 51 H 1.09000 * 109.58340 * 185.57211 * 20 19 18 52 52 H 1.08994 * 109.70205 * 65.22073 * 20 19 18 53 53 H 0.96994 * 120.00200 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2493 6 1 1.7537 -0.1569 2.1369 7 7 3.4997 -0.8294 1.1891 8 6 4.2693 0.1893 1.6208 9 7 5.6122 0.0896 1.5658 10 8 3.7521 1.1983 2.0597 11 6 1.4363 -2.1005 1.3147 12 8 2.1318 -3.0763 1.1277 13 7 0.1235 -2.2497 1.5808 14 6 -0.4797 -3.5846 1.5670 15 6 -1.9693 -3.4747 1.8983 16 1 -2.4702 -2.8695 1.1425 17 6 -2.5950 -4.8772 1.9381 18 6 -4.0492 -4.7678 2.4023 19 6 -4.0925 -4.1812 3.8151 20 6 -3.4830 -2.7758 3.7991 21 7 -2.1357 -2.8513 3.2183 22 6 -1.0562 -2.3451 3.8917 23 1 -0.0817 -2.7929 3.7643 24 6 -1.2144 -1.2564 4.7383 25 7 -2.3374 -0.5701 4.7249 26 14 0.1665 -0.7654 5.8964 27 1 -0.2492 0.4205 6.6877 28 1 0.4670 -1.8931 6.8146 29 1 1.3797 -0.4328 5.1073 30 1 -0.3633 0.6083 0.8283 31 1 -0.3633 0.4133 -0.9410 32 1 -0.3634 -1.0214 0.1126 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7218 -1.2489 39 1 3.9123 -1.6342 0.8386 40 1 6.0249 -0.7152 1.2153 41 1 6.1661 0.8230 1.8762 42 1 -0.4220 -1.4730 1.7814 43 1 0.0125 -4.2134 2.3089 44 1 -0.3595 -4.0275 0.5782 45 1 -2.0381 -5.5072 2.6316 46 1 -2.5634 -5.3173 0.9412 47 1 -4.5046 -5.7581 2.4062 48 1 -4.5994 -4.1177 1.7221 49 1 -3.5215 -4.8177 4.4910 50 1 -5.1268 -4.1254 4.1548 51 1 -3.4210 -2.3929 4.8178 52 1 -4.1041 -2.1128 3.1968 53 1 -2.4479 0.1908 5.3162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713256410.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:03 Heat of formation + Delta-G solvation = -69.436879 kcal Electronic energy + Delta-G solvation = -33233.769439 eV Core-core repulsion = 29140.088923 eV Total energy + Delta-G solvation = -4093.680517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99003 -40.46078 -39.33268 -37.79779 -35.92397 -35.00432 -34.88210 -33.82596 -32.41323 -31.64601 -28.97115 -28.18396 -27.86862 -27.41219 -26.00860 -23.77973 -22.43768 -22.27510 -21.62858 -20.71843 -20.06846 -19.62178 -18.69671 -18.15103 -17.54882 -17.20244 -16.97172 -16.75088 -16.11072 -15.84016 -15.78668 -15.42637 -15.23423 -15.08326 -14.82046 -14.59475 -14.45097 -14.32314 -14.05494 -13.82264 -13.61218 -13.34734 -13.06334 -12.96526 -12.82472 -12.76963 -12.56862 -12.55862 -12.34394 -12.21893 -12.06414 -11.85190 -11.77753 -11.70924 -11.50578 -11.40602 -11.13112 -11.07473 -10.81123 -10.63165 -10.51135 -9.99587 -9.74271 -8.54283 -7.84101 -5.30241 1.36817 1.42887 1.44322 1.55917 1.73583 2.15274 2.43938 2.49956 3.31266 3.53720 3.60262 3.66157 3.75453 3.90013 4.02629 4.11352 4.25518 4.29797 4.35696 4.46163 4.53011 4.58028 4.68049 4.75255 4.77075 4.80543 4.89343 4.90671 5.00346 5.01535 5.03320 5.12650 5.17506 5.24347 5.25515 5.31463 5.31805 5.40288 5.43553 5.48225 5.50323 5.60095 5.67280 5.75382 5.85670 5.89196 6.02786 6.44326 6.63528 7.04927 7.19454 7.23677 7.64066 7.89872 8.41649 9.19162 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.004536 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.638204 B = 6171.984459 C = 7232.242232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.065 4.065 3 C -0.119 4.119 4 C -0.129 4.129 5 C 0.157 3.843 6 H 0.076 0.924 7 N -0.717 5.717 8 C 0.700 3.300 9 N -0.845 5.845 10 O -0.630 6.630 11 C 0.513 3.487 12 O -0.576 6.576 13 N -0.687 5.687 14 C 0.136 3.864 15 C 0.158 3.842 16 H 0.037 0.963 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.136 4.136 20 C 0.176 3.824 21 N -0.601 5.601 22 C -0.232 4.232 23 H 0.062 0.938 24 C -0.028 4.028 25 N -0.920 5.920 26 Si 0.928 3.072 27 H -0.295 1.295 28 H -0.286 1.286 29 H -0.290 1.290 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.412 0.588 40 H 0.413 0.587 41 H 0.422 0.578 42 H 0.415 0.585 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.043 0.957 50 H 0.062 0.938 51 H 0.052 0.948 52 H 0.002 0.998 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 -3.547 -13.009 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.067 4.067 3 C -0.176 4.176 4 C -0.186 4.186 5 C 0.047 3.953 6 H 0.094 0.906 7 N -0.374 5.374 8 C 0.398 3.602 9 N -0.415 5.415 10 O -0.511 6.511 11 C 0.298 3.702 12 O -0.457 6.457 13 N -0.340 5.340 14 C 0.012 3.988 15 C 0.052 3.948 16 H 0.055 0.945 17 C -0.160 4.160 18 C -0.140 4.140 19 C -0.175 4.175 20 C 0.051 3.949 21 N -0.325 5.325 22 C -0.363 4.363 23 H 0.080 0.920 24 C -0.225 4.225 25 N -0.566 5.566 26 Si 0.759 3.241 27 H -0.221 1.221 28 H -0.212 1.212 29 H -0.217 1.217 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.250 0.750 40 H 0.244 0.756 41 H 0.256 0.744 42 H 0.256 0.744 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.062 0.938 50 H 0.081 0.919 51 H 0.070 0.930 52 H 0.020 0.980 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.120 -3.339 -12.701 14.938 hybrid contribution 0.986 0.621 1.465 1.872 sum 8.106 -2.719 -11.236 14.119 Atomic orbital electron populations 1.22299 0.93485 1.03334 1.03006 1.20819 0.96212 0.96102 0.93572 1.21757 1.00884 0.93924 1.01060 1.21765 1.01306 0.99553 0.96014 1.20594 0.80843 0.93299 1.00560 0.90553 1.44586 1.04804 1.19702 1.68335 1.16068 0.82897 0.82929 0.78264 1.42703 1.03663 1.24342 1.70784 1.90975 1.73840 1.32030 1.54231 1.20468 0.82713 0.90608 0.76370 1.90586 1.61065 1.41170 1.52912 1.46448 1.08969 1.11361 1.67182 1.21340 0.93020 0.83826 1.00625 1.21019 0.92501 0.93958 0.87307 0.94535 1.21963 0.96361 0.96168 1.01537 1.21347 0.96179 1.00675 0.95830 1.22055 0.99675 0.98176 0.97570 1.20610 0.84223 0.92257 0.97830 1.44242 1.03957 1.68359 1.15958 1.19150 0.89743 1.06819 1.20569 0.92038 1.25390 0.97771 0.96839 1.02519 1.70047 1.26103 1.19998 1.40458 0.85965 0.80631 0.77105 0.80396 1.22143 1.21243 1.21732 0.93536 0.89914 0.91130 0.92920 0.91383 0.94506 0.93295 0.90642 0.92086 0.74979 0.75641 0.74434 0.74413 0.93530 0.89989 0.92889 0.89759 0.90871 0.92343 0.93782 0.91949 0.93002 0.98031 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 7.32 71.98 0.53 -4.05 16 2 C -0.07 -1.81 0.62 -52.19 -0.03 -1.84 16 3 C -0.12 -3.38 7.08 71.98 0.51 -2.87 16 4 C -0.13 -2.94 8.07 71.98 0.58 -2.36 16 5 C 0.16 5.25 2.00 44.24 0.09 5.34 16 6 H 0.08 3.14 7.58 -2.38 -0.02 3.13 16 7 N -0.72 -20.43 3.98 -461.41 -1.84 -22.27 16 8 C 0.70 20.37 7.41 179.06 1.33 21.69 16 9 N -0.85 -15.15 8.88 -184.76 -1.64 -16.79 16 10 O -0.63 -24.00 14.31 -3.97 -0.06 -24.05 16 11 C 0.51 18.31 5.80 87.66 0.51 18.81 16 12 O -0.58 -21.76 15.83 -3.03 -0.05 -21.81 16 13 N -0.69 -25.07 2.08 -463.06 -0.96 -26.03 16 14 C 0.14 4.69 4.45 86.38 0.38 5.08 16 15 C 0.16 5.61 3.05 45.12 0.14 5.75 16 16 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 17 C -0.12 -3.54 5.40 30.82 0.17 -3.37 16 18 C -0.10 -2.94 5.88 30.62 0.18 -2.76 16 19 C -0.14 -4.75 6.08 30.67 0.19 -4.56 16 20 C 0.18 7.86 5.26 86.37 0.45 8.32 16 21 N -0.60 -26.72 2.97 -674.43 -2.00 -28.72 16 22 C -0.23 -11.59 6.89 84.03 0.58 -11.01 16 23 H 0.06 3.16 5.83 -2.91 -0.02 3.15 16 24 C -0.03 -1.51 5.03 84.86 0.43 -1.09 16 25 N -0.92 -51.24 11.05 21.65 0.24 -51.00 16 26 Si 0.93 45.91 29.57 68.60 2.03 47.94 16 27 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 2.07 4.89 -2.39 -0.01 2.06 16 33 H 0.05 1.54 5.64 -2.38 -0.01 1.53 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.23 7.85 -2.38 -0.02 1.21 16 36 H 0.05 1.20 7.38 -2.39 -0.02 1.18 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.30 7.47 -2.38 -0.02 1.28 16 39 H 0.41 10.27 7.73 -92.71 -0.72 9.55 16 40 H 0.41 4.69 8.84 -92.71 -0.82 3.87 16 41 H 0.42 6.39 8.93 -92.71 -0.83 5.56 16 42 H 0.42 16.51 5.34 -92.71 -0.50 16.01 16 43 H 0.05 1.81 7.51 -2.39 -0.02 1.79 16 44 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 51 H 0.05 2.69 6.08 -2.39 -0.01 2.68 16 52 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 53 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -66.39 395.55 -0.16 -66.55 By element: Atomic # 1 Polarization: 47.01 SS G_CDS: -1.91 Total: 45.10 kcal Atomic # 6 Polarization: 25.06 SS G_CDS: 6.02 Total: 31.08 kcal Atomic # 7 Polarization: -138.61 SS G_CDS: -6.20 Total: -144.81 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.10 Total: -45.86 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -66.39 -0.16 -66.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713256410.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.887 kcal (2) G-P(sol) polarization free energy of solvation -66.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds