Wall clock time and date at job start Sat Apr 11 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46698 * 2 1 4 4 N 1.46902 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.48535 * 110.99775 * 52.60525 * 4 3 2 6 6 C 1.54941 * 103.22639 * 159.72257 * 5 4 3 7 7 C 1.54601 * 102.91878 * 322.58694 * 6 5 4 8 8 C 1.47899 * 111.00030 * 170.00059 * 4 3 2 9 9 H 1.09001 * 110.08312 * 333.60145 * 8 4 3 10 10 C 1.50706 * 109.91345 * 94.80417 * 8 4 3 11 11 O 1.21274 * 120.00042 * 358.76622 * 10 8 4 12 12 N 1.34777 * 119.99766 * 179.04158 * 10 8 4 13 13 C 1.46496 * 120.00266 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47425 * 180.02562 * 13 12 10 15 15 N 1.46896 * 109.46853 * 180.02562 * 14 13 12 16 16 C 1.46895 * 111.00383 * 293.95079 * 15 14 13 17 17 C 1.46907 * 110.99640 * 169.99627 * 15 14 13 18 18 C 1.50704 * 109.47096 * 189.99820 * 17 15 14 19 19 O 1.21295 * 119.99762 * 0.02562 * 18 17 15 20 20 N 1.34775 * 119.99854 * 180.02562 * 18 17 15 21 21 C 1.37096 * 119.99574 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00417 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99802 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00199 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99900 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47432 * 89.99988 * 25 23 21 27 27 H 1.48500 * 109.46991 * 209.99732 * 25 23 21 28 28 H 1.48500 * 109.47283 * 329.99668 * 25 23 21 29 29 H 1.09003 * 109.47143 * 299.99565 * 1 2 3 30 30 H 1.09001 * 109.47256 * 59.99550 * 1 2 3 31 31 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46720 * 240.00620 * 2 1 3 33 33 H 1.08989 * 109.47142 * 120.00016 * 2 1 3 34 34 H 1.08998 * 109.47029 * 60.00809 * 3 2 1 35 35 H 1.08989 * 109.47337 * 299.99897 * 3 2 1 36 36 H 1.08994 * 110.66969 * 41.29098 * 5 4 3 37 37 H 1.09001 * 110.67113 * 278.15062 * 5 4 3 38 38 H 1.08994 * 110.72633 * 204.22818 * 6 5 4 39 39 H 1.09000 * 110.72411 * 80.93839 * 6 5 4 40 40 H 1.09001 * 110.30602 * 263.03975 * 7 6 5 41 41 H 1.09000 * 110.38913 * 140.91746 * 7 6 5 42 42 H 0.96999 * 120.00043 * 0.02562 * 12 10 8 43 43 H 1.09004 * 109.47212 * 300.00463 * 13 12 10 44 44 H 1.09000 * 109.46684 * 60.00307 * 13 12 10 45 45 H 1.09000 * 109.46497 * 300.00014 * 14 13 12 46 46 H 1.08987 * 109.47025 * 60.00130 * 14 13 12 47 47 H 1.08997 * 109.47233 * 59.99943 * 16 15 14 48 48 H 1.08998 * 109.47673 * 180.02562 * 16 15 14 49 49 H 1.09004 * 109.46976 * 300.00573 * 16 15 14 50 50 H 1.08988 * 109.47295 * 309.99784 * 17 15 14 51 51 H 1.08995 * 109.46690 * 70.00173 * 17 15 14 52 52 H 0.96996 * 120.00349 * 359.97438 * 20 18 17 53 53 H 0.97001 * 119.99708 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0407 0.6006 -1.1027 6 6 5.4886 1.1229 -1.2808 7 6 5.3377 2.6445 -1.0523 8 6 4.0388 2.8024 -0.2404 9 1 3.3167 3.3912 -0.8060 10 6 4.3341 3.4775 1.0743 11 8 4.1063 2.9009 2.1166 12 7 4.8462 4.7241 1.0916 13 6 5.1328 5.3805 2.3695 14 6 5.7019 6.7767 2.1094 15 7 5.9897 7.4347 3.3908 16 6 4.7524 7.6955 4.1385 17 6 6.7526 8.6735 3.1869 18 6 7.2391 9.1886 4.5169 19 8 6.9766 8.5831 5.5346 20 7 7.9659 10.3221 4.5756 21 6 8.4088 10.7904 5.7856 22 1 8.1751 10.2513 6.6917 23 6 9.1586 11.9587 5.8460 24 7 9.5828 12.4080 7.0059 25 14 9.5623 12.8916 4.2788 26 1 8.4937 13.8859 4.0053 27 1 10.8612 13.5929 4.4409 28 1 9.6530 11.9377 3.1443 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.4629 0.7505 -2.0146 37 1 4.0438 -0.4511 -0.8163 38 1 5.8513 0.9182 -2.2881 39 1 6.1512 0.6847 -0.5345 40 1 5.2527 3.1637 -2.0069 41 1 6.1865 3.0296 -0.4872 42 1 5.0243 5.1869 0.2580 43 1 4.2132 5.4655 2.9487 44 1 5.8597 4.7895 2.9266 45 1 6.6214 6.6921 1.5302 46 1 4.9747 7.3675 1.5525 47 1 4.2421 6.7529 4.3364 48 1 4.9943 8.1834 5.0827 49 1 4.1027 8.3440 3.5507 50 1 7.6069 8.4718 2.5409 51 1 6.1123 9.4216 2.7196 52 1 8.1761 10.8061 3.7618 53 1 10.1065 13.2234 7.0480 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713454374.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:22 Heat of formation + Delta-G solvation = -84.037537 kcal Electronic energy + Delta-G solvation = -29428.911005 eV Core-core repulsion = 25334.597356 eV Total energy + Delta-G solvation = -4094.313649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30091 -40.50572 -39.27541 -38.11673 -36.03459 -35.62952 -35.30611 -33.74036 -31.73416 -31.44475 -29.92072 -28.97146 -26.98790 -26.42850 -25.31262 -23.47843 -22.83209 -22.29026 -21.25628 -21.23310 -20.86513 -20.16140 -18.32770 -17.70552 -17.43282 -17.18789 -16.79876 -16.73773 -16.38476 -16.21258 -15.90101 -15.47647 -15.45812 -15.04386 -14.91440 -14.78447 -14.42743 -14.35577 -14.20038 -14.06055 -13.81873 -13.70339 -13.47864 -13.09014 -12.93550 -12.75871 -12.59879 -12.56885 -12.48025 -12.37822 -12.30400 -12.11393 -12.07820 -11.96332 -11.78972 -11.70390 -11.55488 -11.45155 -10.79176 -10.36983 -10.21595 -10.07674 -9.35304 -9.23820 -8.39445 -6.00487 1.31414 1.37368 1.46461 1.68273 1.93438 1.98633 2.25047 2.71311 3.04847 3.16895 3.29342 3.57635 3.63224 3.85132 3.93904 4.02689 4.06285 4.10578 4.13753 4.15933 4.27808 4.36019 4.43324 4.44710 4.47434 4.52210 4.61055 4.62097 4.63625 4.74352 4.76037 4.83726 4.88666 4.88968 4.96777 5.02407 5.12341 5.15166 5.20675 5.25065 5.29410 5.36152 5.41551 5.54820 5.85358 5.88617 5.99999 6.06751 6.15380 6.61687 6.63408 6.90918 7.34324 7.42249 8.00719 8.78399 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026151 B = 0.001633 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.450785 B =17142.751587 C =17734.219427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.052 3.948 4 N -0.526 5.526 5 C 0.037 3.963 6 C -0.123 4.123 7 C -0.119 4.119 8 C 0.052 3.948 9 H 0.100 0.900 10 C 0.513 3.487 11 O -0.571 6.571 12 N -0.715 5.715 13 C 0.131 3.869 14 C 0.056 3.944 15 N -0.544 5.544 16 C 0.024 3.976 17 C 0.058 3.942 18 C 0.449 3.551 19 O -0.608 6.608 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.228 1.228 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.417 0.583 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.040 0.960 50 H 0.126 0.874 51 H 0.085 0.915 52 H 0.390 0.610 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.659 -19.091 -31.250 39.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.076 4.076 4 N -0.250 5.250 5 C -0.090 4.090 6 C -0.161 4.161 7 C -0.157 4.157 8 C -0.060 4.060 9 H 0.118 0.882 10 C 0.300 3.700 11 O -0.449 6.449 12 N -0.370 5.370 13 C 0.006 3.994 14 C -0.072 4.072 15 N -0.269 5.269 16 C -0.124 4.124 17 C -0.073 4.073 18 C 0.236 3.764 19 O -0.492 6.492 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.787 3.213 26 H -0.182 1.182 27 H -0.202 1.202 28 H -0.151 1.151 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.254 0.746 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.122 0.878 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.144 0.856 51 H 0.103 0.897 52 H 0.226 0.774 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.457 -20.283 -28.894 37.780 hybrid contribution -0.273 1.809 -0.789 1.993 sum -13.731 -18.474 -29.682 37.561 Atomic orbital electron populations 1.21718 0.94627 1.02371 1.01932 1.21531 0.96414 0.95284 1.02385 1.22310 0.86670 0.98246 1.00347 1.64295 1.08662 1.07070 1.45005 1.23308 0.95262 0.98178 0.92216 1.22519 0.96153 0.94463 1.03003 1.22472 0.94478 0.98168 1.00590 1.22401 0.99911 0.91748 0.91983 0.88227 1.21120 0.76188 0.80977 0.91751 1.90701 1.52871 1.65239 1.36053 1.45725 1.65602 1.15922 1.09720 1.21044 0.99622 0.93089 0.85644 1.22238 1.02118 0.92901 0.89946 1.61289 1.21477 1.24428 1.19730 1.22452 0.89987 1.01075 0.98879 1.21833 1.00222 0.91942 0.93307 1.20983 0.81738 0.81449 0.92192 1.90535 1.60651 1.59262 1.38755 1.42010 1.49666 1.23796 1.07872 1.18993 1.32311 1.08255 0.86201 0.92944 1.26148 0.95908 0.97427 1.02014 1.69819 1.37137 1.23614 1.27178 0.85341 0.78828 0.79243 0.77935 1.18174 1.20202 1.15069 0.93400 0.91859 0.91708 0.90597 0.92848 0.93037 0.93193 0.91710 0.89879 0.88141 0.92223 0.87132 0.90903 0.74594 0.93047 0.93255 0.87844 0.91666 0.91301 0.92835 0.94152 0.85631 0.89725 0.77413 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.87 16 2 C -0.12 -1.54 5.59 30.60 0.17 -1.37 16 3 C 0.05 0.81 5.03 86.30 0.43 1.24 16 4 N -0.53 -9.05 4.53 -862.43 -3.91 -12.96 16 5 C 0.04 0.41 5.10 86.65 0.44 0.85 16 6 C -0.12 -1.15 7.06 31.80 0.22 -0.92 16 7 C -0.12 -1.02 6.47 31.47 0.20 -0.82 16 8 C 0.05 0.73 2.87 44.31 0.13 0.86 16 9 H 0.10 0.95 7.58 -2.39 -0.02 0.93 16 10 C 0.51 11.25 6.99 87.66 0.61 11.87 16 11 O -0.57 -19.16 16.46 -3.01 -0.05 -19.21 16 12 N -0.72 -11.73 5.42 -463.06 -2.51 -14.24 16 13 C 0.13 2.92 5.60 86.38 0.48 3.40 16 14 C 0.06 1.03 5.07 86.30 0.44 1.47 16 15 N -0.54 -15.91 4.50 -927.09 -4.17 -20.08 16 16 C 0.02 0.75 8.96 127.69 1.14 1.89 16 17 C 0.06 1.68 5.45 85.56 0.47 2.14 16 18 C 0.45 20.07 7.47 87.66 0.66 20.72 16 19 O -0.61 -33.93 13.91 -3.08 -0.04 -33.97 16 20 N -0.59 -27.54 5.09 -306.98 -1.56 -29.10 16 21 C -0.33 -19.28 10.16 84.04 0.85 -18.42 16 22 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 24 N -0.94 -56.76 13.96 21.66 0.30 -56.46 16 25 Si 0.97 38.21 27.74 68.60 1.90 40.11 16 26 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 27 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.77 6.79 -2.39 -0.02 0.75 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 0.58 7.82 -2.39 -0.02 0.56 16 36 H 0.06 0.48 8.00 -2.39 -0.02 0.46 16 37 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 38 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.07 0.76 7.62 -2.39 -0.02 0.74 16 42 H 0.42 3.39 8.44 -92.71 -0.78 2.61 16 43 H 0.05 1.34 6.55 -2.38 -0.02 1.32 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 45 H 0.10 1.47 7.93 -2.39 -0.02 1.45 16 46 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 47 H 0.07 2.03 6.47 -2.39 -0.02 2.01 16 48 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 49 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.13 2.82 7.93 -2.39 -0.02 2.80 16 51 H 0.08 1.94 8.12 -2.39 -0.02 1.92 16 52 H 0.39 14.75 5.76 -92.71 -0.53 14.21 16 53 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -87.66 417.32 -3.07 -90.73 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: -0.47 Total: 33.60 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 7.44 Total: 21.57 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -11.85 Total: -132.84 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.09 Total: -53.18 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.90 Total: 40.11 kcal Total: -87.66 -3.07 -90.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713454374.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.695 kcal (2) G-P(sol) polarization free energy of solvation -87.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds