Wall clock time and date at job start Sat Apr 11 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47184 * 2 1 4 4 N 1.46503 * 109.47207 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99662 * 89.99666 * 4 3 2 6 6 O 1.21288 * 119.99898 * 179.97438 * 5 4 3 7 7 C 1.50697 * 120.00127 * 0.02562 * 5 4 3 8 8 C 1.53004 * 109.47344 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.46562 * 55.00053 * 8 7 5 10 10 C 1.52999 * 109.47010 * 174.99847 * 8 7 5 11 11 N 1.46503 * 109.47082 * 295.00059 * 8 7 5 12 12 C 1.34772 * 119.99740 * 154.99893 * 11 8 7 13 13 N 1.34786 * 119.99642 * 180.02562 * 12 11 8 14 14 O 1.21589 * 120.00207 * 359.97438 * 12 11 8 15 15 C 1.46492 * 120.00201 * 270.00281 * 4 3 2 16 16 C 1.53042 * 109.46121 * 240.02496 * 15 4 3 17 17 C 1.53190 * 109.31663 * 178.59909 * 16 15 4 18 18 N 1.46931 * 108.76218 * 54.65751 * 17 16 15 19 19 C 1.36933 * 120.62954 * 126.36486 * 18 17 16 20 20 H 1.08003 * 120.00020 * 331.85824 * 19 18 17 21 21 C 1.38810 * 120.00157 * 151.86441 * 19 18 17 22 22 N 1.31622 * 120.00111 * 343.05765 * 21 19 18 23 23 Si 1.86800 * 120.00182 * 163.06181 * 21 19 18 24 24 H 1.48500 * 109.46951 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47325 * 119.99779 * 23 21 19 26 26 H 1.48504 * 109.46799 * 239.99668 * 23 21 19 27 27 C 1.46923 * 118.73886 * 306.38222 * 18 17 16 28 28 C 1.53043 * 109.46222 * 119.97237 * 15 4 3 29 29 H 1.09002 * 109.47686 * 300.00212 * 1 2 3 30 30 H 1.09007 * 109.47222 * 59.99779 * 1 2 3 31 31 H 1.09000 * 109.47481 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47686 * 239.99788 * 2 1 3 33 33 H 1.09005 * 109.47352 * 119.99455 * 2 1 3 34 34 H 1.09005 * 109.46879 * 59.99882 * 3 2 1 35 35 H 1.08998 * 109.47107 * 299.99618 * 3 2 1 36 36 H 1.09007 * 109.47229 * 59.99576 * 7 5 4 37 37 H 1.08996 * 109.47205 * 299.99652 * 7 5 4 38 38 H 1.08997 * 109.47290 * 60.00651 * 10 8 7 39 39 H 1.09005 * 109.46296 * 180.02562 * 10 8 7 40 40 H 1.08992 * 109.47147 * 299.99900 * 10 8 7 41 41 H 0.97005 * 119.99782 * 335.00028 * 11 8 7 42 42 H 0.96997 * 119.99776 * 179.97438 * 13 12 11 43 43 H 0.96997 * 119.99913 * 359.71885 * 13 12 11 44 44 H 1.09003 * 109.46150 * 359.97438 * 15 4 3 45 45 H 1.08999 * 109.50096 * 298.56821 * 16 15 4 46 46 H 1.09004 * 109.49722 * 58.66521 * 16 15 4 47 47 H 1.09002 * 109.60207 * 294.87072 * 17 16 15 48 48 H 1.09002 * 109.70517 * 174.50744 * 17 16 15 49 49 H 0.97001 * 120.00576 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.59100 * 293.82394 * 27 18 17 51 51 H 1.09004 * 109.70451 * 173.46490 * 27 18 17 52 52 H 1.09000 * 109.49691 * 301.33313 * 28 15 4 53 53 H 1.09000 * 109.49711 * 61.43508 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1793 1.4423 -1.1664 6 8 5.3922 1.4428 -1.1659 7 6 3.4263 1.4426 -2.4717 8 6 4.4210 1.4429 -3.6343 9 1 5.1050 0.6010 -3.5273 10 6 3.6606 1.3174 -4.9561 11 7 5.1820 2.6947 -3.6256 12 6 6.4069 2.7426 -4.1858 13 7 7.1072 3.8941 -4.1773 14 8 6.8805 1.7467 -4.6980 15 6 4.2369 1.4427 1.2696 16 6 5.1162 2.6927 1.3509 17 6 5.8533 2.7072 2.6937 18 7 6.5868 1.4430 2.8439 19 6 7.9284 1.4432 3.1181 20 1 8.5458 2.2679 2.7939 21 6 8.4950 0.3833 3.8127 22 7 7.7284 -0.4433 4.4919 23 14 10.3456 0.1303 3.7837 24 1 10.9768 1.1878 2.9540 25 1 10.8771 0.2038 5.1684 26 1 10.6539 -1.2022 3.2053 27 6 5.8536 0.1787 2.6939 28 6 5.1162 0.1927 1.3512 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 2.7999 2.3328 -2.5297 37 1 2.7994 0.5529 -2.5298 38 1 2.9766 2.1593 -5.0631 39 1 4.3694 1.3172 -5.7842 40 1 3.0945 0.3861 -4.9625 41 1 4.8043 3.4891 -3.2166 42 1 7.9889 3.9285 -4.5801 43 1 6.7280 4.6894 -3.7716 44 1 3.5281 1.4432 2.0977 45 1 5.8417 2.6807 0.5375 46 1 4.4920 3.5825 1.2692 47 1 5.1329 2.8103 3.5052 48 1 6.5542 3.5416 2.7192 49 1 8.1243 -1.1838 4.9777 50 1 5.1331 0.0755 3.5053 51 1 6.5531 -0.6569 2.7179 52 1 4.4919 -0.6972 1.2697 53 1 5.8417 0.2045 0.5378 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713853294.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:35 Heat of formation + Delta-G solvation = -83.240108 kcal Electronic energy + Delta-G solvation = -32150.003405 eV Core-core repulsion = 28055.724336 eV Total energy + Delta-G solvation = -4094.279069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.53770 -40.65975 -38.77646 -37.16800 -36.61233 -34.91900 -34.67293 -33.37830 -32.16974 -31.65326 -31.15152 -28.93517 -27.27594 -26.37017 -24.26894 -23.87542 -23.08784 -22.51697 -21.71404 -21.08115 -19.90158 -19.22869 -18.83310 -18.13512 -17.53322 -17.18089 -16.75809 -16.58440 -16.06739 -15.66102 -15.62322 -15.40581 -15.30535 -15.25780 -14.94390 -14.77023 -14.47182 -14.16147 -14.04044 -13.73787 -13.38595 -13.25872 -13.09914 -13.03028 -12.90065 -12.80731 -12.70759 -12.61040 -12.56547 -12.17776 -12.14151 -11.99592 -11.89516 -11.78511 -11.54859 -11.38436 -11.35746 -11.18624 -10.67484 -10.61768 -10.34869 -9.87328 -9.44724 -8.69994 -7.91234 -5.35109 1.39315 1.42634 1.52604 1.82195 2.03784 2.11107 2.33178 2.47112 3.23867 3.55128 3.66816 3.68515 3.77072 4.01824 4.07431 4.08772 4.21472 4.29823 4.37596 4.45832 4.50264 4.54151 4.66613 4.67529 4.69582 4.71174 4.80107 4.83087 4.87368 4.90572 4.97914 5.04044 5.09773 5.12443 5.18169 5.30848 5.35043 5.36347 5.45407 5.50233 5.54582 5.61406 5.66527 5.69187 5.85339 5.94050 6.07802 6.36370 6.65789 7.12033 7.17116 7.44669 7.74480 7.84026 8.34400 9.15183 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008880 B = 0.004022 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.487574 B = 6960.767081 C = 9219.127198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.144 4.144 3 C 0.104 3.896 4 N -0.607 5.607 5 C 0.497 3.503 6 O -0.563 6.563 7 C -0.135 4.135 8 C 0.172 3.828 9 H 0.045 0.955 10 C -0.152 4.152 11 N -0.717 5.717 12 C 0.701 3.299 13 N -0.854 5.854 14 O -0.653 6.653 15 C 0.172 3.828 16 C -0.127 4.127 17 C 0.146 3.854 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.058 0.942 21 C -0.048 4.048 22 N -0.932 5.932 23 Si 0.961 3.039 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.292 1.292 27 C 0.185 3.815 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.406 0.594 42 H 0.416 0.584 43 H 0.411 0.589 44 H 0.088 0.912 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.024 0.976 48 H 0.049 0.951 49 H 0.250 0.750 50 H 0.004 0.996 51 H 0.045 0.955 52 H 0.053 0.947 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.738 9.578 -16.484 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.183 4.183 3 C -0.017 4.017 4 N -0.339 5.339 5 C 0.286 3.714 6 O -0.441 6.441 7 C -0.175 4.175 8 C 0.066 3.934 9 H 0.064 0.936 10 C -0.210 4.210 11 N -0.372 5.372 12 C 0.399 3.601 13 N -0.422 5.422 14 O -0.535 6.535 15 C 0.068 3.932 16 C -0.167 4.167 17 C 0.020 3.980 18 N -0.332 5.332 19 C -0.392 4.392 20 H 0.076 0.924 21 C -0.243 4.243 22 N -0.578 5.578 23 Si 0.789 3.211 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.219 1.219 27 C 0.058 3.942 28 C -0.175 4.175 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.242 0.758 42 H 0.248 0.752 43 H 0.242 0.758 44 H 0.106 0.894 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.042 0.958 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.022 0.978 51 H 0.063 0.937 52 H 0.072 0.928 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.829 8.574 -16.751 27.336 hybrid contribution 1.674 -0.036 0.833 1.870 sum -18.155 8.537 -15.918 25.610 Atomic orbital electron populations 1.21665 0.93380 1.02190 1.02925 1.21970 0.97429 0.97019 1.01839 1.21989 0.77126 0.97352 1.05262 1.48295 1.07669 1.73094 1.04868 1.21303 0.87917 0.75698 0.86433 1.90792 1.16114 1.49624 1.87587 1.22146 0.98500 1.08063 0.88794 1.20519 0.91810 0.86023 0.95023 0.93636 1.22115 0.99946 1.04031 0.94938 1.44819 1.16397 1.14168 1.61865 1.16207 0.81516 0.83625 0.78764 1.42784 1.22243 1.11382 1.65798 1.90901 1.71764 1.36490 1.54387 1.20705 0.92818 0.94182 0.85498 1.22182 0.98863 0.97264 0.98412 1.21008 0.94175 0.88166 0.94653 1.44247 1.05584 1.01171 1.82240 1.19474 0.84933 1.06550 1.28204 0.92391 1.25708 1.01695 0.99881 0.97047 1.70164 1.35326 1.18652 1.33666 0.85305 0.81054 0.77438 0.77289 1.19620 1.21026 1.21936 1.20469 0.93013 0.89028 0.91644 1.22307 0.98712 0.97365 0.99105 0.92347 0.90598 0.92839 0.91849 0.93865 0.89468 0.86927 0.84451 0.85102 0.89661 0.94386 0.89779 0.75822 0.75179 0.75826 0.89428 0.92827 0.90224 0.95839 0.93252 0.94095 0.97816 0.93672 0.92799 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.14 -1.99 6.26 30.59 0.19 -1.80 16 3 C 0.10 1.37 5.18 86.38 0.45 1.81 16 4 N -0.61 -14.13 2.42 -797.66 -1.93 -16.06 16 5 C 0.50 12.76 6.96 87.66 0.61 13.37 16 6 O -0.56 -21.34 11.60 -3.05 -0.04 -21.37 16 7 C -0.14 -1.95 3.80 29.85 0.11 -1.84 16 8 C 0.17 3.61 2.14 44.99 0.10 3.70 16 9 H 0.05 1.44 7.39 -2.39 -0.02 1.43 16 10 C -0.15 -2.27 9.48 71.98 0.68 -1.58 16 11 N -0.72 -15.41 4.22 -457.80 -1.93 -17.35 16 12 C 0.70 19.97 8.80 179.05 1.58 21.54 16 13 N -0.85 -16.57 8.88 -184.74 -1.64 -18.21 16 14 O -0.65 -25.76 16.84 -3.99 -0.07 -25.83 16 15 C 0.17 5.55 2.51 45.02 0.11 5.66 16 16 C -0.13 -4.50 5.26 30.67 0.16 -4.34 16 17 C 0.15 6.30 6.52 86.36 0.56 6.86 16 18 N -0.61 -32.72 2.99 -699.08 -2.09 -34.81 16 19 C -0.26 -15.52 9.58 84.03 0.81 -14.71 16 20 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 21 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 22 N -0.93 -57.61 11.19 21.65 0.24 -57.37 16 23 Si 0.96 48.13 29.59 68.60 2.03 50.16 16 24 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 27 C 0.18 9.55 5.30 86.36 0.46 10.01 16 28 C -0.13 -5.67 5.27 30.67 0.16 -5.51 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.88 7.22 -2.39 -0.02 0.86 16 33 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.09 1.05 7.92 -2.38 -0.02 1.03 16 35 H 0.11 0.67 6.44 -2.39 -0.02 0.65 16 36 H 0.14 0.83 7.40 -2.38 -0.02 0.82 16 37 H 0.13 1.31 7.19 -2.39 -0.02 1.29 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.41 6.09 8.62 -92.70 -0.80 5.29 16 42 H 0.42 7.56 8.93 -92.71 -0.83 6.73 16 43 H 0.41 5.01 8.84 -92.71 -0.82 4.19 16 44 H 0.09 2.63 7.79 -2.39 -0.02 2.61 16 45 H 0.05 2.25 6.21 -2.39 -0.01 2.24 16 46 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 49 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 50 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 51 H 0.04 2.69 6.06 -2.39 -0.01 2.68 16 52 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 53 H 0.05 2.26 6.21 -2.39 -0.01 2.25 16 Total: -1.00 -88.65 410.86 0.16 -88.48 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -1.52 Total: 22.21 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 7.11 Total: 30.15 kcal Atomic # 7 Polarization: -136.44 SS G_CDS: -7.35 Total: -143.80 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -0.10 Total: -47.20 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -88.65 0.16 -88.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713853294.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.243 kcal (2) G-P(sol) polarization free energy of solvation -88.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds