Wall clock time and date at job start Sat Apr 11 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46960 * 2 1 4 4 H 1.08997 * 109.47406 * 304.26271 * 3 2 1 5 5 C 1.53000 * 109.47384 * 184.25992 * 3 2 1 6 6 N 1.46505 * 109.47309 * 185.00027 * 5 3 2 7 7 C 1.34769 * 119.99825 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00541 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99799 * 180.02562 * 7 6 5 10 10 H 1.08994 * 109.46428 * 319.98020 * 9 7 6 11 11 C 1.53041 * 109.46284 * 79.94863 * 9 7 6 12 12 C 1.53113 * 109.27967 * 179.19740 * 11 9 7 13 13 C 1.53117 * 109.15869 * 302.34512 * 12 11 9 14 14 C 1.53035 * 109.28187 * 57.65440 * 13 12 11 15 15 N 1.46848 * 109.46175 * 199.99957 * 9 7 6 16 16 C 1.46895 * 111.00080 * 54.14497 * 15 9 7 17 17 N 1.46911 * 109.46969 * 64.26174 * 3 2 1 18 18 C 1.46893 * 110.99683 * 65.54609 * 17 3 2 19 19 C 1.50699 * 109.46856 * 183.45673 * 18 17 3 20 20 O 1.21297 * 120.00078 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00264 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00393 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99620 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00044 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99977 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99894 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47101 * 89.99823 * 26 24 22 28 28 H 1.48501 * 109.47392 * 209.99974 * 26 24 22 29 29 H 1.48497 * 109.47249 * 330.00051 * 26 24 22 30 30 H 1.09004 * 109.46783 * 174.73351 * 1 2 3 31 31 H 1.09004 * 109.46931 * 294.72909 * 1 2 3 32 32 H 1.08996 * 109.47355 * 54.73152 * 1 2 3 33 33 H 1.08997 * 109.47200 * 240.00901 * 2 1 3 34 34 H 1.08994 * 109.47731 * 120.00232 * 2 1 3 35 35 H 1.08998 * 109.47276 * 305.00398 * 5 3 2 36 36 H 1.08996 * 109.47099 * 65.00556 * 5 3 2 37 37 H 0.97000 * 119.99635 * 0.02562 * 6 5 3 38 38 H 1.09008 * 109.49971 * 299.13341 * 11 9 7 39 39 H 1.08994 * 109.50597 * 59.25078 * 11 9 7 40 40 H 1.09000 * 109.52512 * 182.43877 * 12 11 9 41 41 H 1.09001 * 109.52386 * 62.24382 * 12 11 9 42 42 H 1.09008 * 109.50245 * 297.71030 * 13 12 11 43 43 H 1.09003 * 109.50562 * 177.59603 * 13 12 11 44 44 H 1.09001 * 109.46312 * 180.80776 * 14 13 12 45 45 H 1.08996 * 109.45139 * 60.83263 * 14 13 12 46 46 H 1.08996 * 109.46852 * 59.99811 * 16 15 9 47 47 H 1.08998 * 109.46945 * 179.97438 * 16 15 9 48 48 H 1.09001 * 109.47053 * 299.99750 * 16 15 9 49 49 H 1.00901 * 110.99711 * 189.50192 * 17 3 2 50 50 H 1.09003 * 109.47494 * 63.46576 * 18 17 3 51 51 H 1.08997 * 109.47826 * 303.45908 * 18 17 3 52 52 H 0.97000 * 119.99745 * 0.02562 * 21 19 18 53 53 H 0.97000 * 119.99798 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6156 1.9779 -0.8493 5 6 3.5662 1.4439 -0.1071 6 7 4.0629 2.8170 0.0128 7 6 5.3863 3.0629 -0.0531 8 8 6.1662 2.1476 -0.2111 9 6 5.8973 4.4753 0.0709 10 1 5.2358 5.1499 -0.4725 11 6 5.9337 4.8767 1.5473 12 6 6.4722 6.3047 1.6698 13 6 7.8623 6.3741 1.0315 14 6 7.7701 5.9293 -0.4299 15 7 7.2506 4.5573 -0.4934 16 6 7.2785 4.0471 -1.8706 17 7 1.6361 2.1046 1.2477 18 6 2.2957 1.4898 2.4073 19 6 1.7939 2.1372 3.6722 20 8 0.9676 3.0233 3.6135 21 7 2.2624 1.7310 4.8689 22 6 1.8056 2.3195 6.0197 23 1 1.0705 3.1090 5.9673 24 6 2.2890 1.9010 7.2533 25 7 3.1838 0.9407 7.3169 26 14 1.6670 2.7035 8.8213 27 1 0.4768 1.9660 9.3163 28 1 2.7350 2.6688 9.8525 29 1 1.2946 4.1135 8.5416 30 1 -0.3633 -1.0234 -0.0943 31 1 -0.3633 0.4299 0.9335 32 1 -0.3634 0.5934 -0.8390 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9871 0.8341 0.6922 36 1 3.8630 1.0333 -1.0722 37 1 3.4392 3.5490 0.1396 38 1 4.9265 4.8308 1.9618 39 1 6.5843 4.1942 2.0940 40 1 6.5406 6.5792 2.7225 41 1 5.8008 6.9926 1.1559 42 1 8.5434 5.7152 1.5702 43 1 8.2332 7.3980 1.0775 44 1 8.7608 5.9639 -0.8832 45 1 7.0996 6.5970 -0.9709 46 1 6.6048 4.6383 -2.4908 47 1 8.2922 4.1198 -2.2645 48 1 6.9591 3.0049 -1.8785 49 1 1.8233 3.0953 1.2083 50 1 3.3737 1.6316 2.3296 51 1 2.0703 0.4237 2.4306 52 1 2.9229 1.0221 4.9159 53 1 3.5216 0.6488 8.1781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714082839.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:41 Heat of formation + Delta-G solvation = -97.960334 kcal Electronic energy + Delta-G solvation = -31290.630256 eV Core-core repulsion = 27195.712869 eV Total energy + Delta-G solvation = -4094.917386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.56475 -40.35976 -39.30569 -38.35039 -35.95523 -35.18408 -34.38752 -33.34442 -33.00200 -32.32830 -29.69493 -28.18613 -27.66091 -26.10775 -25.26002 -24.07743 -23.57306 -21.83963 -21.42089 -20.77387 -20.46872 -19.84682 -18.52496 -18.22806 -17.38826 -17.05602 -16.69432 -16.31157 -16.30195 -15.93333 -15.80193 -15.62926 -15.47698 -15.27318 -15.10602 -14.70376 -14.57531 -14.25425 -14.05847 -13.94358 -13.82181 -13.74059 -13.46641 -13.17953 -13.06248 -12.88022 -12.75860 -12.59771 -12.43102 -12.40454 -12.26226 -12.12141 -11.91429 -11.78523 -11.69346 -11.54332 -11.48131 -11.39088 -10.67861 -10.33692 -10.17720 -10.00596 -9.36580 -9.32030 -8.45647 -5.94550 1.38089 1.41715 1.50583 1.54432 1.96041 2.06238 2.29180 2.87117 2.94719 3.21597 3.51270 3.56595 3.71362 3.76519 3.90171 3.98703 4.04279 4.11630 4.19855 4.23152 4.30835 4.38749 4.43400 4.45416 4.47601 4.54471 4.57253 4.67500 4.68649 4.70809 4.75266 4.92118 4.94432 4.97632 4.98682 5.02872 5.13196 5.19552 5.19972 5.33518 5.38578 5.39661 5.41458 5.57880 5.87049 5.89239 6.07844 6.08792 6.37580 6.43485 6.59981 7.13313 7.15267 7.56981 8.11515 8.71798 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008228 B = 0.003489 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3402.044258 B = 8022.224012 C =10630.065706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.112 0.888 5 C 0.087 3.913 6 N -0.720 5.720 7 C 0.516 3.484 8 O -0.559 6.559 9 C 0.077 3.923 10 H 0.081 0.919 11 C -0.108 4.108 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.057 3.943 15 N -0.542 5.542 16 C 0.020 3.980 17 N -0.658 5.658 18 C 0.065 3.935 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.273 1.273 29 H -0.270 1.270 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.407 0.593 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.032 0.968 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.345 0.655 50 H 0.054 0.946 51 H 0.100 0.900 52 H 0.393 0.607 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 6.628 -19.520 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.023 4.023 4 H 0.130 0.870 5 C -0.039 4.039 6 N -0.373 5.373 7 C 0.302 3.698 8 O -0.437 6.437 9 C -0.035 4.035 10 H 0.098 0.902 11 C -0.146 4.146 12 C -0.154 4.154 13 C -0.155 4.155 14 C -0.070 4.070 15 N -0.268 5.268 16 C -0.128 4.128 17 N -0.290 5.290 18 C -0.068 4.068 19 C 0.229 3.771 20 O -0.503 6.503 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.099 0.901 24 C -0.213 4.213 25 N -0.563 5.563 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.243 0.757 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.164 0.836 50 H 0.072 0.928 51 H 0.117 0.883 52 H 0.226 0.774 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.046 5.804 -19.165 20.918 hybrid contribution 0.281 0.711 0.668 1.015 sum 6.327 6.515 -18.497 20.606 Atomic orbital electron populations 1.21569 0.94919 1.01195 1.01820 1.21537 0.96947 0.94052 1.02643 1.22043 0.90161 0.97587 0.92485 0.86985 1.22131 0.96455 0.82923 1.02381 1.45950 1.07129 1.10257 1.73986 1.20815 0.82108 0.91513 0.75356 1.90661 1.56415 1.47304 1.49273 1.21572 0.91335 0.92416 0.98171 0.90153 1.21531 1.01793 0.98567 0.92754 1.21570 0.97263 0.94720 1.01878 1.21629 0.96908 1.02071 0.94896 1.22214 1.00618 0.86594 0.97535 1.61610 1.20805 1.23350 1.21066 1.22496 1.02430 1.00680 0.87180 1.60186 1.60735 1.07564 1.00517 1.21512 0.96513 1.00036 0.88726 1.20792 0.84860 0.85970 0.85514 1.90488 1.37238 1.35063 1.87515 1.41956 1.39158 1.35078 1.05009 1.19664 1.23324 1.18503 0.84563 0.90086 1.26038 0.96334 0.96967 1.01976 1.69687 1.30067 1.28973 1.27604 0.84946 0.78005 0.78525 0.76995 1.19712 1.19747 1.19477 0.92566 0.94147 0.91999 0.89358 0.92656 0.92811 0.90286 0.75680 0.91106 0.92951 0.91122 0.90443 0.92381 0.89120 0.89360 0.93575 0.94905 0.90243 0.91824 0.83578 0.92823 0.88252 0.77377 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.73 71.98 0.70 -2.15 16 2 C -0.11 -2.19 5.31 30.59 0.16 -2.02 16 3 C 0.09 1.72 2.71 44.91 0.12 1.84 16 4 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 5 C 0.09 1.85 4.47 86.38 0.39 2.23 16 6 N -0.72 -15.32 5.31 -463.06 -2.46 -17.78 16 7 C 0.52 13.36 6.26 87.66 0.55 13.91 16 8 O -0.56 -18.77 14.53 -3.04 -0.04 -18.81 16 9 C 0.08 1.66 2.24 44.19 0.10 1.76 16 10 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 11 C -0.11 -2.48 5.36 30.65 0.16 -2.31 16 12 C -0.12 -2.09 6.00 30.67 0.18 -1.91 16 13 C -0.12 -1.89 6.09 30.65 0.19 -1.71 16 14 C 0.06 0.93 5.46 86.32 0.47 1.40 16 15 N -0.54 -11.89 4.51 -901.61 -4.07 -15.95 16 16 C 0.02 0.40 9.10 127.69 1.16 1.56 16 17 N -0.66 -18.08 5.41 -495.58 -2.68 -20.76 16 18 C 0.06 2.16 5.30 85.56 0.45 2.62 16 19 C 0.44 20.56 7.83 87.66 0.69 21.25 16 20 O -0.62 -32.88 15.85 -3.08 -0.05 -32.93 16 21 N -0.57 -29.58 5.29 -306.98 -1.62 -31.20 16 22 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 25 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 26 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.22 6.28 -2.39 -0.02 1.20 16 35 H 0.05 1.40 6.71 -2.39 -0.02 1.38 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.41 7.21 7.23 -92.71 -0.67 6.54 16 38 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.11 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 45 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 48 H 0.06 1.61 5.63 -2.39 -0.01 1.60 16 49 H 0.34 9.40 7.29 -89.69 -0.65 8.75 16 50 H 0.05 1.75 6.49 -2.39 -0.02 1.74 16 51 H 0.10 3.17 6.22 -2.39 -0.01 3.15 16 52 H 0.39 19.68 7.90 -92.71 -0.73 18.95 16 53 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -71.28 413.12 -3.13 -74.42 By element: Atomic # 1 Polarization: 51.04 SS G_CDS: -1.13 Total: 49.91 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 6.61 Total: 18.26 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -10.54 Total: -135.90 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.09 Total: -51.74 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -71.28 -3.13 -74.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714082839.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.545 kcal (2) G-P(sol) polarization free energy of solvation -71.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds