Wall clock time and date at job start Sat Apr 11 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 N 1.46898 * 109.47099 * 179.97438 * 3 2 1 5 5 C 1.48557 * 111.00302 * 285.41710 * 4 3 2 6 6 C 1.54376 * 104.59742 * 200.96059 * 5 4 3 7 7 C 1.54265 * 105.05995 * 23.85230 * 6 5 4 8 8 C 1.48564 * 110.99690 * 169.99824 * 4 3 2 9 9 H 1.08996 * 110.51272 * 40.21450 * 8 4 3 10 10 C 1.50703 * 110.41200 * 277.81841 * 8 4 3 11 11 O 1.21278 * 119.99902 * 3.37695 * 10 8 4 12 12 N 1.34780 * 119.99487 * 183.37631 * 10 8 4 13 13 C 1.46505 * 119.99368 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47161 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.47150 * 65.00089 * 14 13 12 16 16 C 1.52991 * 109.47482 * 185.00064 * 14 13 12 17 17 N 1.46907 * 109.47065 * 305.00548 * 14 13 12 18 18 C 1.46895 * 110.99962 * 154.99798 * 17 14 13 19 19 C 1.50700 * 109.47048 * 179.97438 * 18 17 14 20 20 O 1.21292 * 119.99931 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99504 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00446 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99362 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99820 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00230 * 359.71778 * 24 22 21 27 27 H 1.48501 * 109.46922 * 90.00204 * 26 24 22 28 28 H 1.48496 * 109.47354 * 210.00401 * 26 24 22 29 29 H 1.48501 * 109.47428 * 330.00509 * 26 24 22 30 30 H 1.09005 * 109.46280 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47123 * 299.99727 * 1 2 3 32 32 H 1.09001 * 109.47338 * 60.00353 * 1 2 3 33 33 H 1.09000 * 109.47362 * 239.99822 * 2 1 3 34 34 H 1.09001 * 109.47338 * 119.99647 * 2 1 3 35 35 H 1.09000 * 109.47268 * 59.99765 * 3 2 1 36 36 H 1.09001 * 109.47372 * 299.99970 * 3 2 1 37 37 H 1.08999 * 110.40969 * 82.17976 * 5 4 3 38 38 H 1.09005 * 110.50664 * 319.79170 * 5 4 3 39 39 H 1.08994 * 110.32478 * 264.95491 * 6 5 4 40 40 H 1.08998 * 110.41139 * 142.79121 * 6 5 4 41 41 H 1.08998 * 110.32299 * 241.09967 * 7 6 5 42 42 H 1.09002 * 110.40729 * 118.93689 * 7 6 5 43 43 H 0.96995 * 120.00253 * 359.97438 * 12 10 8 44 44 H 1.08999 * 109.47197 * 60.00420 * 13 12 10 45 45 H 1.09001 * 109.47430 * 300.00076 * 13 12 10 46 46 H 1.08999 * 109.46933 * 60.00366 * 16 14 13 47 47 H 1.08998 * 109.47413 * 179.97438 * 16 14 13 48 48 H 1.08998 * 109.47289 * 300.00407 * 16 14 13 49 49 H 1.00894 * 111.00220 * 31.03995 * 17 14 13 50 50 H 1.09004 * 109.47549 * 59.99674 * 18 17 14 51 51 H 1.09005 * 109.47114 * 299.99750 * 18 17 14 52 52 H 0.96999 * 120.00044 * 359.97438 * 21 19 18 53 53 H 0.97000 * 120.00377 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0409 1.0741 1.3379 6 6 5.4827 1.6257 1.3486 7 6 5.4830 2.7667 0.3104 8 6 4.0413 2.8085 -0.2403 9 1 3.4501 3.5493 0.2980 10 6 4.0509 3.1163 -1.7155 11 8 3.5991 2.3143 -2.5052 12 7 4.5616 4.2828 -2.1571 13 6 4.5714 4.5818 -3.5913 14 6 5.1997 5.9577 -3.8211 15 1 6.2483 5.9324 -3.5247 16 6 5.0974 6.3240 -5.3030 17 7 4.4880 6.9613 -3.0183 18 6 5.3524 8.1131 -2.7285 19 6 4.5896 9.1192 -1.9059 20 8 3.4392 8.8983 -1.5915 21 7 5.1861 10.2642 -1.5186 22 6 4.4922 11.1792 -0.7697 23 1 3.4676 10.9829 -0.4905 24 6 5.1071 12.3598 -0.3709 25 7 4.4422 13.2368 0.3473 26 14 6.8813 12.6965 -0.8484 27 1 6.9167 13.4093 -2.1506 28 1 7.5234 13.5372 0.1937 29 1 7.6144 11.4106 -0.9680 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 4.0473 -0.0091 1.4591 38 1 3.4494 1.5405 2.1258 39 1 6.1878 0.8477 1.0563 40 1 5.7344 2.0124 2.3361 41 1 6.1885 2.5487 -0.4915 42 1 5.7338 3.7143 0.7871 43 1 4.9225 4.9243 -1.5254 44 1 3.5490 4.5819 -3.9694 45 1 5.1529 3.8241 -4.1165 46 1 4.0488 6.3494 -5.5994 47 1 5.5446 7.3045 -5.4667 48 1 5.6254 5.5794 -5.8987 49 1 4.1291 6.5553 -2.1672 50 1 5.6691 8.5743 -3.6640 51 1 6.2290 7.7789 -2.1733 52 1 6.1065 10.4403 -1.7691 53 1 4.8714 14.0608 0.6261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714240782.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:59 Heat of formation + Delta-G solvation = -95.148267 kcal Electronic energy + Delta-G solvation = -30162.788918 eV Core-core repulsion = 26067.993471 eV Total energy + Delta-G solvation = -4094.795446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37349 -40.36442 -39.34031 -38.04971 -36.01771 -35.59462 -34.88826 -33.74250 -32.24190 -31.75490 -30.49692 -28.27290 -27.15458 -26.46673 -25.47675 -23.46197 -22.68673 -21.66674 -21.38547 -21.32020 -21.02819 -20.28503 -18.57916 -17.73849 -17.42656 -16.97982 -16.95940 -16.81190 -16.44366 -16.18832 -15.81171 -15.59721 -15.47122 -15.01602 -14.91972 -14.51674 -14.43341 -14.24929 -14.07882 -13.88336 -13.69656 -13.62465 -13.50044 -13.33584 -12.97256 -12.84665 -12.77830 -12.61656 -12.51680 -12.40408 -12.28282 -12.19813 -11.96926 -11.88256 -11.85248 -11.59145 -11.50603 -11.49887 -10.81777 -10.43317 -10.24334 -10.15659 -9.52112 -9.37320 -8.40550 -6.01629 1.30872 1.36997 1.45686 1.59296 1.95854 1.99642 2.23985 2.68860 2.98230 3.15913 3.35050 3.51931 3.54176 3.71191 3.89976 3.97382 4.09136 4.11153 4.16122 4.19563 4.24143 4.36036 4.43066 4.43421 4.50940 4.54031 4.57310 4.62762 4.68901 4.70965 4.81863 4.85734 4.86644 4.93694 4.99882 5.05734 5.08306 5.13579 5.19152 5.28394 5.31024 5.35579 5.47053 5.53564 5.74930 5.90580 5.99296 6.03841 6.32863 6.44156 6.60230 6.88979 7.19830 7.40573 7.97316 8.77035 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.002276 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.674695 B =12297.984827 C =13054.207836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.048 3.952 4 N -0.504 5.504 5 C 0.030 3.970 6 C -0.118 4.118 7 C -0.112 4.112 8 C 0.038 3.962 9 H 0.082 0.918 10 C 0.523 3.477 11 O -0.561 6.561 12 N -0.724 5.724 13 C 0.124 3.876 14 C 0.081 3.919 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.685 5.685 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.615 6.615 21 N -0.590 5.590 22 C -0.328 4.328 23 H 0.054 0.946 24 C -0.017 4.017 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.259 1.259 28 H -0.277 1.277 29 H -0.227 1.227 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.406 0.594 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.342 0.658 50 H 0.115 0.885 51 H 0.085 0.915 52 H 0.390 0.610 53 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.845 -24.785 -1.979 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.081 4.081 4 N -0.229 5.229 5 C -0.097 4.097 6 C -0.156 4.156 7 C -0.150 4.150 8 C -0.074 4.074 9 H 0.100 0.900 10 C 0.310 3.690 11 O -0.439 6.439 12 N -0.378 5.378 13 C 0.000 4.000 14 C -0.028 4.028 15 H 0.093 0.907 16 C -0.196 4.196 17 N -0.321 5.321 18 C -0.071 4.071 19 C 0.236 3.764 20 O -0.500 6.500 21 N -0.231 5.231 22 C -0.457 4.457 23 H 0.072 0.928 24 C -0.215 4.215 25 N -0.576 5.576 26 Si 0.785 3.215 27 H -0.183 1.183 28 H -0.202 1.202 29 H -0.150 1.150 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.242 0.758 44 H 0.074 0.926 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.099 0.901 49 H 0.163 0.837 50 H 0.133 0.867 51 H 0.103 0.897 52 H 0.226 0.774 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.592 -25.418 -3.200 26.719 hybrid contribution 0.523 1.434 1.445 2.102 sum 8.115 -23.983 -1.755 25.380 Atomic orbital electron populations 1.21731 0.94862 1.02418 1.01706 1.21360 0.95930 0.95050 1.02245 1.22304 0.87226 0.98510 1.00029 1.65080 1.08534 1.20607 1.28643 1.23262 0.95757 1.02054 0.88672 1.22296 0.96101 0.97604 0.99628 1.22312 0.92343 1.01070 0.99264 1.22685 0.99692 0.93056 0.91980 0.90009 1.20670 0.76545 0.80810 0.91009 1.90673 1.46757 1.48393 1.58034 1.45984 1.63067 1.19614 1.09135 1.21527 1.01462 0.96049 0.80918 1.21846 0.96737 0.88329 0.95923 0.90662 1.21759 1.02401 1.02341 0.93141 1.60099 1.37839 1.08693 1.25443 1.21730 0.93992 0.91169 1.00247 1.21010 0.87882 0.83770 0.83780 1.90558 1.20354 1.78585 1.60464 1.42022 1.14157 1.17748 1.49216 1.18989 0.98053 0.98828 1.29816 0.92785 1.26142 1.04687 0.94572 0.96115 1.69809 1.40073 1.10285 1.37411 0.85362 0.76652 0.80444 0.79036 1.18338 1.20192 1.15040 0.91365 0.92269 0.93526 0.92613 0.91060 0.94024 0.93007 0.89068 0.92942 0.90346 0.89109 0.90838 0.88563 0.75799 0.92604 0.89885 0.93141 0.91758 0.90125 0.83700 0.86713 0.89749 0.77418 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.63 16 2 C -0.11 -1.95 6.05 30.60 0.19 -1.77 16 3 C 0.05 1.01 4.62 86.30 0.40 1.41 16 4 N -0.50 -10.48 4.62 -861.03 -3.98 -14.45 16 5 C 0.03 0.44 5.91 86.45 0.51 0.95 16 6 C -0.12 -1.41 7.00 31.49 0.22 -1.19 16 7 C -0.11 -1.57 6.47 31.49 0.20 -1.36 16 8 C 0.04 0.75 2.67 44.32 0.12 0.87 16 9 H 0.08 1.58 8.00 -2.39 -0.02 1.57 16 10 C 0.52 12.93 6.84 87.66 0.60 13.53 16 11 O -0.56 -18.34 15.76 -3.02 -0.05 -18.39 16 12 N -0.72 -14.76 4.93 -463.05 -2.28 -17.04 16 13 C 0.12 2.55 5.31 86.38 0.46 3.00 16 14 C 0.08 1.50 2.81 44.91 0.13 1.63 16 15 H 0.08 1.07 7.80 -2.39 -0.02 1.05 16 16 C -0.14 -2.39 9.41 71.98 0.68 -1.71 16 17 N -0.69 -18.28 5.93 -495.57 -2.94 -21.21 16 18 C 0.06 1.65 5.96 85.56 0.51 2.16 16 19 C 0.45 19.14 7.82 87.66 0.69 19.83 16 20 O -0.62 -33.06 15.78 -3.07 -0.05 -33.11 16 21 N -0.59 -26.56 5.09 -306.97 -1.56 -28.12 16 22 C -0.33 -18.74 10.16 84.04 0.85 -17.88 16 23 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 24 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 25 N -0.94 -55.63 13.96 21.66 0.30 -55.32 16 26 Si 0.97 37.46 27.73 68.60 1.90 39.36 16 27 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 28 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 29 H -0.23 -7.20 6.53 99.48 0.65 -6.55 16 30 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.09 7.47 -2.39 -0.02 1.07 16 35 H 0.04 0.80 7.77 -2.39 -0.02 0.78 16 36 H 0.05 1.37 7.30 -2.39 -0.02 1.35 16 37 H 0.09 1.21 7.85 -2.39 -0.02 1.19 16 38 H 0.05 0.71 7.75 -2.38 -0.02 0.69 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 1.09 7.85 -2.39 -0.02 1.07 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.41 6.95 7.35 -92.71 -0.68 6.26 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 48 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.34 9.79 6.41 -89.70 -0.58 9.22 16 50 H 0.11 2.64 7.44 -2.38 -0.02 2.62 16 51 H 0.08 1.71 8.06 -2.38 -0.02 1.69 16 52 H 0.39 14.30 5.77 -92.71 -0.53 13.76 16 53 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -80.72 420.51 -2.85 -83.58 By element: Atomic # 1 Polarization: 48.25 SS G_CDS: -0.94 Total: 47.32 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.73 Total: 17.39 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -10.45 Total: -136.15 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.10 Total: -51.49 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 1.90 Total: 39.36 kcal Total: -80.72 -2.85 -83.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714240782.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.570 kcal (2) G-P(sol) polarization free energy of solvation -80.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds