Wall clock time and date at job start Sat Apr 11 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46971 * 2 1 4 4 C 1.53008 * 109.47295 * 119.99655 * 2 1 3 5 5 C 1.53001 * 109.47199 * 239.99758 * 2 1 3 6 6 H 1.09001 * 109.46869 * 175.88853 * 5 2 1 7 7 N 1.46496 * 109.47226 * 55.88968 * 5 2 1 8 8 C 1.34774 * 120.00380 * 84.99719 * 7 5 2 9 9 N 1.34775 * 119.99818 * 180.02562 * 8 7 5 10 10 O 1.21581 * 119.99935 * 359.97438 * 8 7 5 11 11 C 1.50698 * 109.47015 * 295.88166 * 5 2 1 12 12 O 1.21284 * 119.99569 * 93.01124 * 11 5 2 13 13 N 1.34776 * 120.00426 * 273.00821 * 11 5 2 14 14 C 1.46497 * 119.99740 * 174.97757 * 13 11 5 15 15 H 1.08998 * 109.47728 * 35.00270 * 14 13 11 16 16 C 1.53004 * 109.46939 * 155.00246 * 14 13 11 17 17 C 1.52998 * 109.46940 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47597 * 299.99685 * 17 16 14 19 19 H 1.08998 * 109.47216 * 300.00652 * 18 17 16 20 20 N 1.46497 * 109.47241 * 179.97438 * 18 17 16 21 21 C 1.36941 * 119.99963 * 154.99957 * 20 18 17 22 22 H 1.08004 * 119.99827 * 0.02562 * 21 20 18 23 23 C 1.38808 * 120.00027 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00435 * 0.02562 * 23 21 20 25 25 Si 1.86810 * 119.99923 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46906 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47026 * 120.00004 * 25 23 21 28 28 H 1.48492 * 109.46891 * 240.00125 * 25 23 21 29 29 C 1.53004 * 109.46718 * 60.00179 * 18 17 16 30 30 C 1.52999 * 109.47063 * 299.99849 * 29 18 17 31 31 H 1.09007 * 109.46793 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47216 * 60.00532 * 1 2 3 33 33 H 1.09004 * 109.46856 * 300.00072 * 1 2 3 34 34 H 1.08995 * 109.47478 * 59.99641 * 3 2 1 35 35 H 1.09001 * 109.47279 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.46884 * 299.99577 * 3 2 1 37 37 H 1.08994 * 109.46562 * 55.82453 * 4 2 1 38 38 H 1.09001 * 109.46889 * 175.82760 * 4 2 1 39 39 H 1.09004 * 109.46706 * 295.82660 * 4 2 1 40 40 H 0.97006 * 119.99588 * 265.00364 * 7 5 2 41 41 H 0.97001 * 120.00122 * 359.97438 * 9 8 7 42 42 H 0.97000 * 120.00039 * 180.02562 * 9 8 7 43 43 H 0.96993 * 119.99894 * 354.97915 * 13 11 5 44 44 H 1.08999 * 109.46830 * 300.00014 * 16 14 13 45 45 H 1.09005 * 109.47273 * 59.99491 * 16 14 13 46 46 H 1.08998 * 109.47370 * 60.00243 * 17 16 14 47 47 H 1.09010 * 109.46682 * 179.97438 * 17 16 14 48 48 H 0.96998 * 120.00204 * 335.01098 * 20 18 17 49 49 H 0.96990 * 120.00167 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.46891 * 60.00274 * 29 18 17 51 51 H 1.08999 * 109.46830 * 179.97438 * 29 18 17 52 52 H 1.08994 * 109.47124 * 299.99919 * 30 29 18 53 53 H 1.09006 * 109.46825 * 179.97438 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 2.0400 -0.7213 -1.2492 6 1 3.1275 -0.6579 -1.2868 7 7 1.4726 -0.0903 -2.4433 8 6 2.0692 0.9915 -2.9820 9 7 1.5467 1.5722 -4.0803 10 8 3.0781 1.4440 -2.4766 11 6 1.6227 -2.1685 -1.1992 12 8 0.5900 -2.5204 -1.7289 13 7 2.3971 -3.0717 -0.5659 14 6 1.9395 -4.4558 -0.4216 15 1 1.3729 -4.7454 -1.3067 16 6 3.1494 -5.3794 -0.2659 17 6 2.6714 -6.8249 -0.1146 18 6 1.7792 -6.9403 1.1229 19 1 2.3459 -6.6504 2.0077 20 7 1.3211 -8.3242 1.2674 21 6 0.9633 -8.8019 2.4999 22 1 1.0185 -8.1582 3.3654 23 6 0.5297 -10.1134 2.6369 24 7 0.4629 -10.8981 1.5823 25 14 0.0410 -10.7648 4.3181 26 1 0.2044 -9.6916 5.3314 27 1 -1.3776 -11.2028 4.2860 28 1 0.9070 -11.9176 4.6732 29 6 0.5693 -6.0167 0.9672 30 6 1.0472 -4.5712 0.8160 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8899 33 1 -0.3633 0.5139 0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6169 -1.7249 1.2875 38 1 3.1275 -0.7864 1.2127 39 1 1.7391 -0.1659 2.1377 40 1 0.6673 -0.4511 -2.8463 41 1 0.7416 1.2114 -4.4833 42 1 1.9763 2.3506 -4.4683 43 1 3.2573 -2.8052 -0.2057 44 1 3.7852 -5.2969 -1.1474 45 1 3.7160 -5.0898 0.6192 46 1 2.1046 -7.1147 -0.9994 47 1 3.5334 -7.4829 -0.0041 48 1 1.2713 -8.9023 0.4901 49 1 0.1596 -11.8144 1.6780 50 1 0.0026 -6.3065 0.0824 51 1 -0.0666 -6.0992 1.8486 52 1 1.6139 -4.2815 1.7008 53 1 0.1853 -3.9133 0.7046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714313042.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:12 Heat of formation + Delta-G solvation = -106.312342 kcal Electronic energy + Delta-G solvation = -31388.257848 eV Core-core repulsion = 27292.978291 eV Total energy + Delta-G solvation = -4095.279557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.01900 -40.58678 -39.36608 -37.76506 -36.40304 -35.01476 -34.62016 -33.84587 -32.47085 -31.66840 -29.58100 -28.18312 -28.04496 -27.60391 -25.48961 -23.64797 -22.75556 -22.22510 -21.62721 -20.99103 -19.95036 -19.58952 -19.06037 -18.49931 -17.43738 -17.25706 -17.04249 -16.78902 -16.18382 -15.87557 -15.68140 -15.38629 -15.24079 -15.10964 -15.01844 -14.83625 -14.52424 -14.24209 -13.96708 -13.71969 -13.43950 -13.18247 -13.06763 -13.04229 -12.95847 -12.84379 -12.55514 -12.40658 -12.33410 -12.22240 -12.08619 -12.01316 -11.86662 -11.71973 -11.63546 -11.44620 -11.33752 -11.17897 -10.88327 -10.80328 -10.57572 -10.00652 -9.97048 -8.97704 -7.92564 -5.20331 1.45476 1.47398 1.47994 1.57765 1.71688 2.16134 2.37536 2.57431 3.40636 3.49752 3.63576 3.72303 3.79600 3.86000 3.88672 3.92960 4.09801 4.31961 4.34622 4.40339 4.42932 4.50846 4.55692 4.62351 4.67517 4.76074 4.80214 4.87875 4.92350 5.01468 5.03535 5.04039 5.12199 5.13790 5.18452 5.27472 5.28183 5.30294 5.33706 5.44891 5.48053 5.50431 5.54662 5.57573 5.67252 5.85040 6.07813 6.30651 6.51470 7.03500 7.17826 7.35913 7.66648 8.14202 8.35848 9.31392 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.024452 B = 0.002192 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.807282 B =12770.399629 C =13189.745876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.067 4.067 3 C -0.119 4.119 4 C -0.152 4.152 5 C 0.161 3.839 6 H 0.110 0.890 7 N -0.724 5.724 8 C 0.705 3.295 9 N -0.851 5.851 10 O -0.623 6.623 11 C 0.519 3.481 12 O -0.565 6.565 13 N -0.704 5.704 14 C 0.154 3.846 15 H 0.068 0.932 16 C -0.107 4.107 17 C -0.113 4.113 18 C 0.172 3.828 19 H 0.048 0.952 20 N -0.740 5.740 21 C -0.232 4.232 22 H 0.076 0.924 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.969 3.031 26 H -0.265 1.265 27 H -0.297 1.297 28 H -0.294 1.294 29 C -0.122 4.122 30 C -0.110 4.110 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.409 0.591 41 H 0.411 0.589 42 H 0.422 0.578 43 H 0.416 0.584 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.371 0.629 49 H 0.249 0.751 50 H 0.038 0.962 51 H 0.040 0.960 52 H 0.077 0.923 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 28.605 -8.581 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C -0.176 4.176 4 C -0.210 4.210 5 C 0.051 3.949 6 H 0.128 0.872 7 N -0.381 5.381 8 C 0.403 3.597 9 N -0.420 5.420 10 O -0.504 6.504 11 C 0.305 3.695 12 O -0.444 6.444 13 N -0.356 5.356 14 C 0.050 3.950 15 H 0.086 0.914 16 C -0.145 4.145 17 C -0.152 4.152 18 C 0.064 3.936 19 H 0.066 0.934 20 N -0.379 5.379 21 C -0.364 4.364 22 H 0.094 0.906 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.799 3.201 26 H -0.189 1.189 27 H -0.224 1.224 28 H -0.221 1.221 29 C -0.163 4.163 30 C -0.149 4.149 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.246 0.754 41 H 0.241 0.759 42 H 0.255 0.745 43 H 0.253 0.747 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.057 0.943 51 H 0.059 0.941 52 H 0.096 0.904 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.195 28.612 -8.230 30.222 hybrid contribution -1.001 -1.084 0.061 1.477 sum 4.194 27.528 -8.169 29.019 Atomic orbital electron populations 1.21824 0.94145 1.01459 1.02105 1.20844 0.96234 0.96422 0.93361 1.21757 1.01023 0.93768 1.01095 1.22047 1.02190 1.00368 0.96375 1.20707 1.00208 0.87816 0.86125 0.87201 1.44719 1.31811 1.31137 1.30416 1.15976 0.82655 0.80151 0.80915 1.42820 1.33303 1.35846 1.29991 1.90959 1.27634 1.66809 1.65016 1.20688 0.83703 0.87844 0.77287 1.90702 1.25896 1.81149 1.46656 1.45958 1.22516 1.09316 1.57783 1.20854 0.95797 0.80461 0.97927 0.91396 1.21658 0.96339 0.92597 1.03945 1.21633 0.99228 0.96925 0.97412 1.20499 0.92848 0.83619 0.96622 0.93433 1.42697 1.78910 1.09458 1.06852 1.19655 1.34147 0.94811 0.87773 0.90639 1.25542 1.03825 0.97318 1.00555 1.69821 1.55613 1.07052 1.29806 0.85126 0.76839 0.78105 0.80059 1.18939 1.22421 1.22111 1.22016 0.99308 0.94941 1.00065 1.21758 0.99180 0.95570 0.98379 0.93753 0.92564 0.91820 0.92416 0.92602 0.93508 0.92454 0.90669 0.91227 0.75391 0.75896 0.74458 0.74713 0.89556 0.89359 0.92933 0.91672 0.79775 0.94193 0.94289 0.94116 0.90418 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.03 71.98 0.58 -1.77 16 2 C -0.07 -1.04 0.62 -52.18 -0.03 -1.07 16 3 C -0.12 -1.97 7.06 71.98 0.51 -1.46 16 4 C -0.15 -2.05 7.64 71.98 0.55 -1.50 16 5 C 0.16 2.68 1.94 44.25 0.09 2.77 16 6 H 0.11 1.80 7.58 -2.39 -0.02 1.78 16 7 N -0.72 -11.36 4.06 -461.43 -1.87 -13.23 16 8 C 0.70 11.77 7.37 179.06 1.32 13.09 16 9 N -0.85 -7.39 8.88 -184.75 -1.64 -9.03 16 10 O -0.62 -14.65 14.31 -3.97 -0.06 -14.71 16 11 C 0.52 10.36 5.31 87.66 0.47 10.83 16 12 O -0.57 -15.19 14.95 -3.04 -0.05 -15.24 16 13 N -0.70 -11.95 3.90 -442.53 -1.73 -13.67 16 14 C 0.15 3.45 2.50 45.00 0.11 3.56 16 15 H 0.07 1.88 7.51 -2.39 -0.02 1.86 16 16 C -0.11 -2.20 5.39 30.59 0.16 -2.03 16 17 C -0.11 -3.38 5.39 30.59 0.16 -3.21 16 18 C 0.17 6.45 2.77 44.99 0.12 6.58 16 19 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 20 N -0.74 -37.00 5.12 -322.94 -1.65 -38.65 16 21 C -0.23 -12.80 9.93 84.03 0.83 -11.96 16 22 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 24 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 25 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 C -0.12 -4.29 5.50 30.60 0.17 -4.12 16 30 C -0.11 -2.85 5.49 30.60 0.17 -2.68 16 31 H 0.04 0.93 6.87 -2.38 -0.02 0.91 16 32 H 0.06 0.93 7.50 -2.39 -0.02 0.91 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 1.01 7.79 -2.39 -0.02 1.00 16 36 H 0.05 0.89 5.67 -2.38 -0.01 0.88 16 37 H 0.06 0.89 6.65 -2.39 -0.02 0.87 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.41 6.06 7.82 -92.70 -0.72 5.33 16 41 H 0.41 1.52 8.84 -92.71 -0.82 0.70 16 42 H 0.42 2.74 8.93 -92.71 -0.83 1.91 16 43 H 0.42 4.66 8.42 -92.71 -0.78 3.88 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 48 H 0.37 20.10 7.80 -92.71 -0.72 19.38 16 49 H 0.25 14.92 8.31 -92.72 -0.77 14.15 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 53 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -73.62 408.89 -1.93 -75.55 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -2.92 Total: 37.43 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.68 Total: 2.84 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -6.61 Total: -134.27 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.10 Total: -29.94 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.62 -1.93 -75.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714313042.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.766 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds