Wall clock time and date at job start Sat Apr 11 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 11 11 C 1.53198 * 108.89335 * 126.29969 * 10 9 7 12 12 C 1.53350 * 109.14641 * 54.57862 * 11 10 9 13 13 C 1.53000 * 109.41773 * 178.67869 * 12 11 10 14 14 C 1.53002 * 109.46966 * 295.12783 * 13 12 11 15 15 N 1.46503 * 109.47337 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99965 * 180.02562 * 15 14 13 17 17 O 1.21282 * 120.00016 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99707 * 179.97438 * 16 15 14 19 19 C 1.53006 * 109.46801 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46688 * 180.02562 * 19 18 16 21 21 C 1.53002 * 109.46966 * 180.02562 * 20 19 18 22 22 N 1.46492 * 109.47197 * 180.02562 * 21 20 19 23 23 C 1.34783 * 120.00165 * 179.97438 * 22 21 20 24 24 N 1.34778 * 119.99884 * 179.97438 * 23 22 21 25 25 O 1.21584 * 119.99975 * 0.02562 * 23 22 21 26 26 C 1.53044 * 109.60893 * 298.71132 * 12 11 10 27 27 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 28 28 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.58983 * 246.15688 * 10 9 7 30 30 H 1.08993 * 109.58892 * 6.44125 * 10 9 7 31 31 H 1.08996 * 109.49640 * 174.65737 * 11 10 9 32 32 H 1.09000 * 109.49939 * 294.75884 * 11 10 9 33 33 H 1.08997 * 109.42600 * 58.75344 * 12 11 10 34 34 H 1.09000 * 109.47417 * 55.12332 * 13 12 11 35 35 H 1.08998 * 109.47314 * 175.12869 * 13 12 11 36 36 H 1.09009 * 109.47236 * 300.00016 * 14 13 12 37 37 H 1.08998 * 109.47253 * 59.99408 * 14 13 12 38 38 H 0.96997 * 119.99827 * 359.97438 * 15 14 13 39 39 H 1.09000 * 109.47053 * 299.99915 * 18 16 15 40 40 H 1.08998 * 109.47162 * 60.00027 * 18 16 15 41 41 H 1.09000 * 109.46995 * 300.00136 * 19 18 16 42 42 H 1.08998 * 109.47000 * 60.00222 * 19 18 16 43 43 H 1.09000 * 109.47417 * 299.99760 * 20 19 18 44 44 H 1.08998 * 109.47314 * 60.00297 * 20 19 18 45 45 H 1.09000 * 109.46684 * 299.99998 * 21 20 19 46 46 H 1.08998 * 109.47253 * 59.99408 * 21 20 19 47 47 H 0.97010 * 120.00180 * 359.97438 * 22 21 20 48 48 H 0.96997 * 120.00249 * 0.02562 * 24 23 22 49 49 H 0.97000 * 119.99546 * 180.02562 * 24 23 22 50 50 H 1.08996 * 109.49900 * 301.42445 * 26 12 11 51 51 H 1.08999 * 109.52516 * 181.34285 * 26 12 11 52 52 H 1.08998 * 109.58495 * 353.41108 * 27 9 7 53 53 H 1.09000 * 109.58924 * 113.69864 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0708 -4.6187 0.9632 12 6 0.8133 -4.7005 1.8369 13 6 1.0517 -5.6889 2.9802 14 6 1.2430 -7.0947 2.4074 15 7 1.4707 -8.0413 3.5022 16 6 1.6667 -9.3474 3.2339 17 8 1.6540 -9.7393 2.0862 18 6 1.9015 -10.3210 4.3600 19 6 2.0927 -11.7268 3.7872 20 6 2.3304 -12.7153 4.9306 21 6 2.5223 -14.1211 4.3578 22 7 2.7493 -15.0676 5.4525 23 6 2.9445 -16.3740 5.1843 24 7 3.1539 -17.2448 6.1915 25 8 2.9327 -16.7667 4.0337 26 6 0.4985 -3.3188 2.4148 27 6 0.2264 -2.3401 1.2681 28 1 -0.4849 0.8400 0.0004 29 1 1.0402 -4.0609 -0.8482 30 1 2.7330 -3.5129 -0.7669 31 1 2.3089 -5.6065 0.5688 32 1 2.9059 -4.2543 1.5615 33 1 -0.0270 -5.0411 1.2318 34 1 1.9449 -5.3970 3.5325 35 1 0.1921 -5.6835 3.6504 36 1 0.3498 -7.3867 1.8550 37 1 2.1026 -7.1001 1.7372 38 1 1.4812 -7.7278 4.4201 39 1 2.7944 -10.0288 4.9126 40 1 1.0417 -10.3159 5.0299 41 1 1.1995 -12.0187 3.2348 42 1 2.9523 -11.7323 3.1170 43 1 3.2235 -12.4237 5.4833 44 1 1.4706 -12.7098 5.6004 45 1 1.6295 -14.4130 3.8048 46 1 3.3823 -14.1263 3.6881 47 1 2.7592 -14.7543 6.3705 48 1 3.1638 -16.9314 7.1094 49 1 3.2948 -18.1848 5.9984 50 1 1.3483 -2.9669 2.9996 51 1 -0.3816 -3.3834 3.0546 52 1 0.0994 -1.3343 1.6686 53 1 -0.6773 -2.6386 0.7368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714327882.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:17 Heat of formation + Delta-G solvation = -114.023220 kcal Electronic energy + Delta-G solvation = -28344.869606 eV Core-core repulsion = 24249.255681 eV Total energy + Delta-G solvation = -4095.613925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86893 -40.69926 -39.49373 -37.13682 -36.60596 -35.02870 -34.96802 -34.09753 -33.03205 -31.62115 -30.63490 -29.47939 -26.94611 -25.37909 -24.34023 -23.52703 -22.36654 -22.14149 -22.05607 -21.12660 -20.56322 -19.17458 -18.69499 -18.25412 -17.74089 -17.16598 -16.91995 -16.79004 -16.57902 -15.92590 -15.76827 -15.65778 -15.29692 -15.25328 -15.21560 -14.90538 -14.77695 -14.38274 -14.15335 -13.84595 -13.74615 -13.30774 -13.01936 -12.93598 -12.83036 -12.63595 -12.53858 -12.44148 -12.25583 -12.12265 -12.06494 -11.92266 -11.80776 -11.52864 -11.52013 -11.51286 -11.11436 -10.97860 -10.75185 -10.74928 -10.52411 -10.00281 -9.96543 -8.66236 -7.87050 -5.32706 1.46368 1.47185 1.57553 1.74258 1.95926 2.16435 2.33335 2.51575 3.27300 3.66425 3.72587 3.82728 3.86673 3.89279 3.94561 4.05709 4.15725 4.31960 4.35290 4.42264 4.45557 4.56979 4.60862 4.68111 4.75527 4.78319 4.80842 4.87600 4.90207 4.91465 5.04154 5.06152 5.09203 5.13261 5.28294 5.34745 5.36877 5.41188 5.42183 5.47927 5.50755 5.55320 5.57443 5.67675 5.81814 5.91700 6.04213 6.39964 6.66696 7.13172 7.16055 7.37463 7.66220 7.88040 8.39735 9.19085 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.045786 B = 0.001226 C = 0.001219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.397363 B =22826.494375 C =22965.889158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.266 4.266 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.137 3.863 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.106 4.106 14 C 0.121 3.879 15 N -0.719 5.719 16 C 0.499 3.501 17 O -0.596 6.596 18 C -0.128 4.128 19 C -0.103 4.103 20 C -0.112 4.112 21 C 0.134 3.866 22 N -0.730 5.730 23 C 0.693 3.307 24 N -0.848 5.848 25 O -0.655 6.655 26 C -0.120 4.120 27 C 0.174 3.826 28 H 0.250 0.750 29 H 0.007 0.993 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.418 0.582 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.416 0.584 48 H 0.416 0.584 49 H 0.419 0.581 50 H 0.054 0.946 51 H 0.071 0.929 52 H 0.051 0.949 53 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 -28.406 23.320 37.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.397 4.397 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.012 3.988 11 C -0.155 4.155 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.003 4.003 15 N -0.372 5.372 16 C 0.288 3.712 17 O -0.477 6.477 18 C -0.167 4.167 19 C -0.142 4.142 20 C -0.150 4.150 21 C 0.009 3.991 22 N -0.388 5.388 23 C 0.391 3.609 24 N -0.417 5.417 25 O -0.537 6.537 26 C -0.159 4.159 27 C 0.049 3.951 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.255 0.745 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.253 0.747 48 H 0.247 0.753 49 H 0.252 0.748 50 H 0.072 0.928 51 H 0.089 0.911 52 H 0.069 0.931 53 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 4.501 -28.686 21.518 36.141 hybrid contribution 0.125 1.226 0.124 1.239 sum 4.627 -27.460 21.642 35.268 Atomic orbital electron populations 1.70195 1.06733 1.25850 1.55459 1.25799 0.96020 1.01488 1.01205 0.85290 0.78144 0.79520 0.77579 1.21250 1.21624 1.19443 1.19533 0.92808 0.86248 1.41083 0.91856 1.44330 1.36077 1.02182 1.50910 1.21070 0.96765 0.86443 0.94561 1.22019 0.97752 0.98511 0.97263 1.20951 0.97410 0.94483 0.96248 1.21683 1.03461 0.91588 0.97672 1.21287 1.00624 0.88541 0.89844 1.45997 1.72672 1.07322 1.11179 1.21593 0.74980 0.83540 0.91135 1.90717 1.52779 1.79121 1.25052 1.21691 1.06634 0.92479 0.95902 1.21188 1.02111 0.93174 0.97703 1.21671 1.04512 0.90795 0.98002 1.21186 1.00395 0.88587 0.88940 1.44921 1.77088 1.05388 1.11381 1.16332 0.77536 0.82278 0.84782 1.42799 1.78779 1.11334 1.08804 1.90957 1.61413 1.79199 1.22167 1.22008 1.00910 0.95182 0.97756 1.20619 0.87443 0.97819 0.89269 0.94099 0.97548 0.93424 0.90912 0.92414 0.92533 0.90251 0.89686 0.93128 0.92671 0.74510 0.85895 0.85828 0.92823 0.92865 0.88917 0.88862 0.93357 0.93379 0.74670 0.75320 0.74849 0.92763 0.91062 0.93055 0.99163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.25 11.20 21.65 0.24 -56.00 16 2 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 3 Si 0.97 45.22 29.59 68.60 2.03 47.25 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.27 -15.03 9.58 84.03 0.81 -14.23 16 8 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -31.48 2.99 -699.09 -2.09 -33.57 16 10 C 0.14 5.90 6.50 86.36 0.56 6.46 16 11 C -0.12 -3.85 5.16 30.78 0.16 -3.69 16 12 C -0.07 -2.14 2.15 -10.66 -0.02 -2.16 16 13 C -0.11 -2.16 4.80 30.60 0.15 -2.01 16 14 C 0.12 2.60 5.43 86.38 0.47 3.07 16 15 N -0.72 -11.22 5.56 -463.04 -2.57 -13.80 16 16 C 0.50 9.37 7.83 87.66 0.69 10.06 16 17 O -0.60 -17.91 15.98 -3.04 -0.05 -17.96 16 18 C -0.13 -1.03 5.70 29.85 0.17 -0.86 16 19 C -0.10 -1.18 4.50 30.60 0.14 -1.04 16 20 C -0.11 -0.56 5.33 30.60 0.16 -0.40 16 21 C 0.13 1.60 5.67 86.38 0.49 2.09 16 22 N -0.73 -6.41 5.56 -478.54 -2.66 -9.07 16 23 C 0.69 10.56 8.84 179.05 1.58 12.15 16 24 N -0.85 -4.51 8.88 -184.74 -1.64 -6.15 16 25 O -0.65 -18.05 17.18 -3.98 -0.07 -18.12 16 26 C -0.12 -4.22 5.36 30.68 0.16 -4.05 16 27 C 0.17 8.45 5.30 86.36 0.46 8.91 16 28 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 31 H 0.07 2.11 6.52 -2.39 -0.02 2.09 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.05 1.38 6.53 -2.39 -0.02 1.37 16 38 H 0.42 3.38 8.47 -92.71 -0.79 2.59 16 39 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 42 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 43 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.42 0.22 8.49 -92.70 -0.79 -0.56 16 48 H 0.42 -1.03 8.84 -92.71 -0.82 -1.85 16 49 H 0.42 1.91 8.93 -92.71 -0.83 1.08 16 50 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 52 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 53 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 Total: -1.00 -87.13 421.65 -2.71 -89.84 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -2.29 Total: 5.70 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.39 Total: 11.88 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -8.72 Total: -118.60 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.12 Total: -36.08 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -87.13 -2.71 -89.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714327882.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.181 kcal (2) G-P(sol) polarization free energy of solvation -87.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds