Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47297 * 2 1 4 4 N 1.46897 * 109.47479 * 179.97438 * 3 2 1 5 5 C 1.46901 * 110.99609 * 66.04608 * 4 3 2 6 6 C 1.46901 * 111.00402 * 190.00267 * 4 3 2 7 7 C 1.50702 * 109.47010 * 170.00489 * 6 4 3 8 8 O 1.21283 * 120.00234 * 359.97438 * 7 6 4 9 9 N 1.34772 * 119.99767 * 180.02562 * 7 6 4 10 10 C 1.46504 * 120.00218 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47281 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.63198 * 51.89671 * 11 10 9 13 13 C 1.55140 * 110.70231 * 288.59628 * 11 10 9 14 14 C 1.54908 * 101.65271 * 205.96427 * 13 11 10 15 15 N 1.47844 * 104.79422 * 37.07172 * 14 13 11 16 16 C 1.46896 * 111.00138 * 213.63597 * 15 14 13 17 17 C 1.50700 * 109.46942 * 290.84301 * 16 15 14 18 18 O 1.21293 * 120.00282 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00075 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00173 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99666 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00001 * 180.27893 * 20 19 17 23 23 N 1.31414 * 119.99893 * 359.72318 * 22 20 19 24 24 Si 1.86801 * 119.99957 * 179.72309 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46780 * 119.99924 * 24 22 20 27 27 H 1.48495 * 109.46909 * 239.99525 * 24 22 20 28 28 C 1.47437 * 108.56814 * 335.90519 * 15 14 13 29 29 H 1.08999 * 109.46818 * 300.00334 * 1 2 3 30 30 H 1.09000 * 109.46728 * 59.99533 * 1 2 3 31 31 H 1.08996 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47211 * 240.00024 * 2 1 3 33 33 H 1.08999 * 109.47112 * 120.00091 * 2 1 3 34 34 H 1.09005 * 109.46804 * 60.00144 * 3 2 1 35 35 H 1.09000 * 109.47613 * 299.99926 * 3 2 1 36 36 H 1.09001 * 109.47239 * 183.95245 * 5 4 3 37 37 H 1.09002 * 109.47395 * 303.95305 * 5 4 3 38 38 H 1.08995 * 109.47226 * 63.96123 * 5 4 3 39 39 H 1.08995 * 109.47243 * 50.00101 * 6 4 3 40 40 H 1.08997 * 109.46646 * 290.00024 * 6 4 3 41 41 H 0.97003 * 120.00122 * 359.97438 * 9 7 6 42 42 H 1.08995 * 109.46929 * 59.99801 * 10 9 7 43 43 H 1.09000 * 109.46697 * 299.99977 * 10 9 7 44 44 H 1.09002 * 110.99406 * 324.05859 * 13 11 10 45 45 H 1.08998 * 110.99163 * 87.83724 * 13 11 10 46 46 H 1.09000 * 110.37552 * 278.24461 * 14 13 11 47 47 H 1.08998 * 110.37022 * 155.90018 * 14 13 11 48 48 H 1.08994 * 109.47346 * 170.84607 * 16 15 14 49 49 H 1.08998 * 109.47279 * 50.84279 * 16 15 14 50 50 H 0.97000 * 120.00140 * 0.02562 * 19 17 16 51 51 H 0.97004 * 119.99542 * 180.02562 * 23 22 20 52 52 H 1.09007 * 109.89457 * 120.39461 * 28 15 14 53 53 H 1.08998 * 109.89196 * 241.41945 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0360 0.8855 -1.2524 6 6 4.0355 2.7931 0.2388 7 6 5.5217 2.7182 0.4767 8 8 6.0868 1.6454 0.4508 9 7 6.2228 3.8434 0.7192 10 6 7.6676 3.7707 0.9509 11 6 8.2156 5.1772 1.2002 12 1 7.6438 5.6795 1.9804 13 6 8.2106 6.0079 -0.1100 14 6 9.3468 7.0256 0.1603 15 7 10.3703 6.2600 0.9033 16 6 11.0618 7.1140 1.8782 17 6 11.9191 8.1163 1.1490 18 8 11.9512 8.1186 -0.0635 19 7 12.6501 9.0101 1.8441 20 6 13.4296 9.9223 1.1808 21 1 13.4581 9.9242 0.1011 22 6 14.1876 10.8399 1.8975 23 7 14.1533 10.8371 3.2112 24 14 15.2557 12.0777 0.9938 25 1 15.1193 11.8732 -0.4707 26 1 14.8226 13.4542 1.3443 27 1 16.6745 11.8893 1.3895 28 6 9.7126 5.1218 1.5708 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6768 1.9562 0.8901 35 1 1.6768 1.9563 -0.8900 36 1 5.1233 0.8322 -1.1975 37 1 3.6304 -0.1148 -1.4043 38 1 3.7453 1.5258 -2.0852 39 1 3.5487 3.2237 1.1139 40 1 3.8379 3.4187 -0.6316 41 1 5.7709 4.7014 0.7402 42 1 8.1547 3.3403 0.0760 43 1 7.8648 3.1448 1.8213 44 1 8.4443 5.3812 -0.9707 45 1 7.2557 6.5153 -0.2470 46 1 8.9784 7.8536 0.7659 47 1 9.7570 7.3947 -0.7796 48 1 11.6905 6.4971 2.5202 49 1 10.3262 7.6398 2.4869 50 1 12.6247 9.0081 2.8138 51 1 14.6822 11.4780 3.7116 52 1 10.1468 4.1852 1.2209 53 1 9.8329 5.2053 2.6509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714645829.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -91.650263 kcal Electronic energy + Delta-G solvation = -28968.888958 eV Core-core repulsion = 24874.245197 eV Total energy + Delta-G solvation = -4094.643761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05975 -40.53562 -39.31379 -38.25956 -36.15821 -35.75098 -34.07910 -33.38609 -32.96450 -30.67835 -29.41127 -28.43282 -27.89229 -26.45700 -25.36017 -23.87906 -22.36507 -21.64702 -21.63162 -21.02286 -20.91800 -19.87587 -18.08939 -17.96050 -17.30879 -17.02029 -16.83085 -16.48712 -16.30275 -16.05696 -15.92503 -15.72666 -15.57978 -15.11806 -15.03492 -14.62902 -14.52109 -14.26165 -14.12874 -13.72398 -13.61838 -13.54360 -13.25388 -13.01643 -12.93586 -12.84480 -12.74570 -12.64021 -12.40748 -12.35327 -12.31995 -12.11352 -12.08186 -11.94341 -11.82890 -11.63949 -11.47656 -11.44704 -10.75510 -10.28860 -10.03517 -9.99491 -9.27970 -9.16442 -8.46035 -5.94462 1.36504 1.41663 1.55734 1.69990 2.07129 2.08946 2.29352 2.85269 3.04111 3.20946 3.40098 3.58949 3.65197 3.85736 3.94928 3.98283 4.14586 4.28912 4.29325 4.34115 4.35972 4.36928 4.38971 4.49707 4.50926 4.54674 4.56724 4.57796 4.66301 4.70553 4.81295 4.84968 4.87483 4.89463 4.97610 5.06627 5.10586 5.20207 5.24605 5.30817 5.32515 5.41757 5.43742 5.51397 5.91159 5.95233 6.07582 6.10667 6.17946 6.62340 6.63843 7.14476 7.34343 7.58080 8.14481 8.71696 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.045733 B = 0.001391 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.103290 B =20123.451980 C =20181.201251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.057 3.943 4 N -0.547 5.547 5 C 0.021 3.979 6 C 0.039 3.961 7 C 0.508 3.492 8 O -0.569 6.569 9 N -0.717 5.717 10 C 0.142 3.858 11 C -0.104 4.104 12 H 0.104 0.896 13 C -0.112 4.112 14 C 0.050 3.950 15 N -0.532 5.532 16 C 0.054 3.946 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.048 3.952 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.415 0.585 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.040 0.960 47 H 0.053 0.947 48 H 0.107 0.893 49 H 0.072 0.928 50 H 0.396 0.604 51 H 0.277 0.723 52 H 0.078 0.922 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.901 -15.928 -1.263 32.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.271 5.271 5 C -0.127 4.127 6 C -0.092 4.092 7 C 0.295 3.705 8 O -0.448 6.448 9 N -0.371 5.371 10 C 0.017 3.983 11 C -0.123 4.123 12 H 0.122 0.878 13 C -0.150 4.150 14 C -0.077 4.077 15 N -0.257 5.257 16 C -0.077 4.077 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.080 4.080 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.252 0.748 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.125 0.875 49 H 0.089 0.911 50 H 0.229 0.771 51 H 0.087 0.913 52 H 0.096 0.904 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -26.825 -17.054 -1.903 31.844 hybrid contribution 0.155 1.879 0.004 1.885 sum -26.670 -15.175 -1.899 30.744 Atomic orbital electron populations 1.21707 0.94390 1.02177 1.02237 1.21517 0.96258 0.96044 1.02054 1.22250 0.85156 0.97908 1.01718 1.61622 1.08533 1.20758 1.36223 1.22488 1.01236 1.00075 0.88888 1.22050 0.90983 0.91551 1.04637 1.21048 0.90279 0.83507 0.75653 1.90679 1.72419 1.30055 1.51637 1.45870 1.08635 1.10051 1.72542 1.21124 0.80191 0.95921 1.01018 1.22508 0.96144 0.95139 0.98531 0.87789 1.22776 0.98214 0.96670 0.97306 1.22933 0.90951 0.95631 0.98216 1.63119 1.28265 1.09304 1.25013 1.21971 0.97566 0.94588 0.93607 1.20857 0.84094 0.84156 0.88155 1.90482 1.69330 1.74668 1.15797 1.41935 1.40496 1.29652 1.09246 1.19683 1.22508 1.11183 0.92789 0.90499 1.25997 0.98909 0.99883 0.96343 1.69679 1.42210 1.38131 1.06194 0.84896 0.77854 0.77702 0.78039 1.19891 1.19506 1.19679 1.22880 0.92273 0.94279 0.98590 0.92109 0.92370 0.92324 0.92405 0.92280 0.89569 0.93941 0.91981 0.90923 0.95214 0.85453 0.89850 0.74802 0.92655 0.91668 0.91271 0.88261 0.94150 0.92894 0.87521 0.91053 0.77053 0.91345 0.90358 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.12 -1.27 5.86 30.59 0.18 -1.09 16 3 C 0.06 0.57 4.96 86.30 0.43 1.00 16 4 N -0.55 -8.25 4.50 -927.07 -4.17 -12.42 16 5 C 0.02 0.35 9.01 127.69 1.15 1.50 16 6 C 0.04 0.43 5.45 85.56 0.47 0.90 16 7 C 0.51 8.99 7.55 87.66 0.66 9.66 16 8 O -0.57 -15.60 14.31 -3.04 -0.04 -15.65 16 9 N -0.72 -9.37 5.47 -463.06 -2.53 -11.91 16 10 C 0.14 2.36 4.97 86.38 0.43 2.79 16 11 C -0.10 -1.68 2.96 -9.61 -0.03 -1.71 16 12 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 13 C -0.11 -2.16 6.44 31.98 0.21 -1.96 16 14 C 0.05 1.51 5.75 86.77 0.50 2.01 16 15 N -0.53 -16.98 4.86 -890.13 -4.33 -21.30 16 16 C 0.05 1.86 5.05 85.56 0.43 2.29 16 17 C 0.44 21.16 7.58 87.66 0.66 21.82 16 18 O -0.62 -34.62 14.61 -3.07 -0.04 -34.66 16 19 N -0.58 -29.72 5.29 -306.98 -1.62 -31.34 16 20 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 23 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 24 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 28 C 0.05 1.05 6.46 86.65 0.56 1.61 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.66 6.47 -2.39 -0.02 0.65 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.67 7.93 -2.38 -0.02 0.66 16 35 H 0.04 0.37 8.12 -2.39 -0.02 0.35 16 36 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 37 H 0.07 1.11 6.30 -2.39 -0.02 1.09 16 38 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.13 0.80 7.93 -2.39 -0.02 0.79 16 40 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 41 H 0.42 2.82 8.47 -92.71 -0.79 2.03 16 42 H 0.06 1.14 8.00 -2.39 -0.02 1.12 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.48 7.94 -2.39 -0.02 1.46 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.04 1.20 7.62 -2.39 -0.02 1.18 16 47 H 0.05 2.01 7.38 -2.39 -0.02 1.99 16 48 H 0.11 3.27 8.03 -2.39 -0.02 3.25 16 49 H 0.07 2.13 7.85 -2.39 -0.02 2.12 16 50 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 51 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 52 H 0.08 1.77 7.82 -2.38 -0.02 1.75 16 53 H 0.07 1.42 7.55 -2.39 -0.02 1.40 16 Total: -1.00 -76.22 420.02 -3.41 -79.63 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.61 Total: 31.85 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 7.64 Total: 20.10 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -12.37 Total: -126.42 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.09 Total: -50.31 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -76.22 -3.41 -79.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714645829.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.021 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds