Wall clock time and date at job start Sat Apr 11 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47389 * 2 1 4 4 C 1.53001 * 109.47023 * 119.99977 * 2 1 3 5 5 C 1.52997 * 109.47491 * 175.07281 * 4 2 1 6 6 H 1.09003 * 109.47135 * 57.28928 * 5 4 2 7 7 C 1.53005 * 109.47025 * 297.29313 * 5 4 2 8 8 N 1.46493 * 109.47025 * 184.99537 * 7 5 4 9 9 C 1.36934 * 120.00199 * 179.97438 * 8 7 5 10 10 H 1.08007 * 119.99980 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00675 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99366 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00342 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47245 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.46974 * 119.99497 * 13 11 9 16 16 H 1.48494 * 109.47474 * 239.99749 * 13 11 9 17 17 N 1.46501 * 109.47297 * 177.28960 * 5 4 2 18 18 C 1.34774 * 119.99707 * 270.97979 * 17 5 4 19 19 O 1.21276 * 120.00485 * 4.72661 * 18 17 5 20 20 C 1.50698 * 119.99617 * 184.73004 * 18 17 5 21 21 H 1.09003 * 109.49769 * 60.00239 * 20 18 17 22 22 C 1.53044 * 109.49787 * 180.02562 * 20 18 17 23 23 C 1.53043 * 109.53882 * 181.28443 * 22 20 18 24 24 C 1.53190 * 109.33936 * 298.68147 * 23 22 20 25 25 N 1.46931 * 108.77383 * 54.61785 * 24 23 22 26 26 C 1.34781 * 120.62748 * 126.37152 * 25 24 23 27 27 N 1.34777 * 119.99910 * 4.80582 * 26 25 24 28 28 O 1.21585 * 120.00082 * 184.80933 * 26 25 24 29 29 C 1.46918 * 118.74176 * 306.39434 * 25 24 23 30 30 H 1.09006 * 109.47077 * 300.00608 * 1 2 3 31 31 H 1.08995 * 109.46979 * 60.00059 * 1 2 3 32 32 H 1.09001 * 109.47480 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46674 * 239.99348 * 2 1 3 34 34 H 1.08997 * 109.46872 * 185.14331 * 3 2 1 35 35 H 1.09006 * 109.46978 * 305.14222 * 3 2 1 36 36 H 1.09003 * 109.47352 * 65.14118 * 3 2 1 37 37 H 1.09003 * 109.47205 * 55.07264 * 4 2 1 38 38 H 1.09005 * 109.47171 * 295.07451 * 4 2 1 39 39 H 1.08998 * 109.46517 * 304.99776 * 7 5 4 40 40 H 1.09002 * 109.47298 * 64.99474 * 7 5 4 41 41 H 0.97002 * 120.00445 * 0.02562 * 8 7 5 42 42 H 0.97004 * 119.99631 * 180.02562 * 12 11 9 43 43 H 0.97001 * 119.99407 * 90.71306 * 17 5 4 44 44 H 1.08997 * 109.45885 * 301.33489 * 22 20 18 45 45 H 1.08998 * 109.46124 * 61.29761 * 22 20 18 46 46 H 1.08999 * 109.49293 * 178.71862 * 23 22 20 47 47 H 1.08997 * 109.49854 * 58.64662 * 23 22 20 48 48 H 1.08997 * 109.58930 * 294.83410 * 24 23 22 49 49 H 1.08999 * 109.59259 * 174.40764 * 24 23 22 50 50 H 0.97000 * 120.00486 * 5.06168 * 27 26 25 51 51 H 0.97009 * 120.00021 * 185.06711 * 27 26 25 52 52 H 1.08999 * 109.58772 * 293.81924 * 29 25 24 53 53 H 1.09006 * 109.58691 * 173.39864 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.8295 1.1890 6 1 3.9965 0.1671 1.0952 7 6 3.9687 -1.6758 -0.0201 8 7 5.4194 -1.8793 -0.0111 9 6 6.0142 -2.6123 -1.0030 10 1 5.4137 -3.0409 -1.7919 11 6 7.3888 -2.8055 -0.9944 12 7 8.1205 -2.2837 -0.0328 13 14 8.1999 -3.8061 -2.3472 14 1 7.1649 -4.2798 -3.3010 15 1 9.1856 -2.9593 -3.0660 16 1 8.8940 -4.9751 -1.7499 17 7 4.0585 -1.4621 2.4147 18 6 4.3611 -0.7059 3.4885 19 8 4.1445 0.4873 3.4704 20 6 4.9687 -1.3429 4.7115 21 1 5.9158 -1.8121 4.4449 22 6 5.2124 -0.2722 5.7776 23 6 5.8589 -0.9128 7.0080 24 6 4.9109 -1.9669 7.5884 25 7 4.5571 -2.9200 6.5275 26 6 4.7309 -4.2443 6.7082 27 7 5.1417 -4.7131 7.9032 28 8 4.5173 -5.0159 5.7932 29 6 4.0107 -2.4020 5.2659 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1261 1.4437 -0.0921 35 1 1.6035 1.9822 -0.8404 36 1 1.7539 1.9291 0.9325 37 1 1.6064 -1.7203 1.2945 38 1 1.7505 -0.1590 2.1371 39 1 3.4660 -2.6417 0.0285 40 1 3.6796 -1.1615 -0.9366 41 1 5.9587 -1.4953 0.6979 42 1 9.0811 -2.4184 -0.0269 43 1 4.1638 -2.4255 2.4547 44 1 5.8746 0.4951 5.3769 45 1 4.2623 0.1804 6.0615 46 1 6.0529 -0.1458 7.7578 47 1 6.7976 -1.3865 6.7207 48 1 4.0082 -1.4818 7.9596 49 1 5.4061 -2.4947 8.4034 50 1 5.2415 -4.1069 8.6538 51 1 5.3375 -5.6569 8.0126 52 1 3.0346 -1.9523 5.4478 53 1 3.9120 -3.2168 4.5486 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714921728.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:54 Heat of formation + Delta-G solvation = -101.388371 kcal Electronic energy + Delta-G solvation = -31455.533771 eV Core-core repulsion = 27360.467734 eV Total energy + Delta-G solvation = -4095.066037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71291 -40.78542 -38.86025 -37.88845 -36.34868 -35.18018 -35.02663 -33.32917 -33.12019 -32.15742 -30.26997 -27.99792 -27.22784 -26.41697 -25.47755 -24.51159 -23.15671 -22.24060 -21.31953 -20.56857 -20.50637 -19.48108 -19.16869 -18.16479 -17.79677 -17.30709 -16.82619 -16.57241 -16.11903 -15.99396 -15.90474 -15.42898 -15.36059 -15.09656 -15.02570 -14.85783 -14.45105 -14.39053 -14.18189 -14.13277 -13.81080 -13.54224 -13.37242 -13.17644 -12.95216 -12.81330 -12.63201 -12.50780 -12.20125 -12.05258 -12.00869 -11.97026 -11.87767 -11.78356 -11.67174 -11.54778 -11.35402 -11.32392 -11.01766 -10.74377 -10.70583 -9.96704 -9.64419 -9.01826 -7.96196 -5.25280 1.45927 1.46644 1.52678 1.56623 1.78985 2.11777 2.26424 2.54550 3.22634 3.38404 3.59227 3.68779 3.75682 3.80950 3.92554 4.02637 4.06821 4.12283 4.18737 4.20488 4.25991 4.42538 4.50736 4.55947 4.59196 4.71265 4.73716 4.76312 4.82929 4.87906 4.91033 4.94764 5.01357 5.03209 5.05371 5.13661 5.16835 5.18540 5.35751 5.37447 5.42104 5.48034 5.49521 5.53282 5.61271 5.83036 6.01149 6.24947 6.55461 6.90858 7.23020 7.32028 7.60724 8.05752 8.29605 9.27357 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007061 B = 0.003962 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3964.374439 B = 7065.232761 C = 9557.819568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.106 4.106 5 C 0.145 3.855 6 H 0.066 0.934 7 C 0.146 3.854 8 N -0.742 5.742 9 C -0.243 4.243 10 H 0.078 0.922 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.972 3.028 14 H -0.264 1.264 15 H -0.294 1.294 16 H -0.295 1.295 17 N -0.710 5.710 18 C 0.522 3.478 19 O -0.572 6.572 20 C -0.115 4.115 21 H 0.086 0.914 22 C -0.094 4.094 23 C -0.129 4.129 24 C 0.106 3.894 25 N -0.624 5.624 26 C 0.700 3.300 27 N -0.846 5.846 28 O -0.644 6.644 29 C 0.147 3.853 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.040 0.960 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.404 0.596 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.059 0.941 48 H 0.093 0.907 49 H 0.110 0.890 50 H 0.413 0.587 51 H 0.420 0.580 52 H 0.085 0.915 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.441 2.610 19.179 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.145 4.145 5 C 0.040 3.960 6 H 0.084 0.916 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.374 4.374 10 H 0.096 0.904 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.801 3.199 14 H -0.189 1.189 15 H -0.222 1.222 16 H -0.222 1.222 17 N -0.359 5.359 18 C 0.308 3.692 19 O -0.451 6.451 20 C -0.138 4.138 21 H 0.104 0.896 22 C -0.132 4.132 23 C -0.167 4.167 24 C -0.015 4.015 25 N -0.362 5.362 26 C 0.399 3.601 27 N -0.417 5.417 28 O -0.526 6.526 29 C 0.023 3.977 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.239 0.761 44 H 0.075 0.925 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.077 0.923 48 H 0.111 0.889 49 H 0.128 0.872 50 H 0.247 0.753 51 H 0.253 0.747 52 H 0.103 0.897 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.780 2.991 18.328 22.543 hybrid contribution 1.488 -0.868 -0.457 1.782 sum -11.291 2.124 17.871 21.246 Atomic orbital electron populations 1.21772 0.93463 1.02184 1.02160 1.21144 0.96967 0.95970 0.97511 1.21834 1.00126 0.96355 1.01866 1.21871 0.92583 1.01339 0.98725 1.21168 0.95127 0.96501 0.83233 0.91564 1.21154 0.84452 0.96856 0.95621 1.42518 1.02743 1.63168 1.30072 1.19669 0.90906 1.23723 1.03130 0.90403 1.25543 0.97071 1.02981 1.01004 1.69838 1.05069 1.51329 1.35714 0.85092 0.78353 0.77664 0.78771 1.18862 1.22156 1.22207 1.46066 1.65937 1.11098 1.12847 1.20745 0.76979 0.86719 0.84743 1.90639 1.55043 1.16245 1.83200 1.21686 1.00147 0.98359 0.93588 0.89622 1.21299 1.02150 0.95759 0.94019 1.21942 0.98329 0.98998 0.97457 1.22018 1.00043 0.90467 0.89007 1.47217 1.67565 1.04235 1.17146 1.16144 0.77799 0.82359 0.83765 1.42903 1.73926 1.14406 1.10490 1.90963 1.60530 1.57259 1.43805 1.21202 0.95270 0.95440 0.85817 0.92516 0.91815 0.92132 0.91163 0.94585 0.91577 0.92872 0.90723 0.91888 0.95013 0.94238 0.79514 0.94155 0.76058 0.92450 0.90485 0.87273 0.92266 0.88920 0.87242 0.75338 0.74717 0.89731 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.19 71.98 0.66 -2.04 16 2 C -0.10 -2.41 2.75 -10.79 -0.03 -2.44 16 3 C -0.14 -3.77 8.82 71.98 0.63 -3.14 16 4 C -0.11 -2.92 4.50 30.59 0.14 -2.78 16 5 C 0.14 5.01 2.07 44.99 0.09 5.11 16 6 H 0.07 2.66 5.93 -2.39 -0.01 2.64 16 7 C 0.15 5.83 5.42 86.38 0.47 6.30 16 8 N -0.74 -38.21 5.43 -343.46 -1.87 -40.07 16 9 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 10 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 11 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 12 N -0.97 -60.56 13.06 21.65 0.28 -60.28 16 13 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 14 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 16 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 17 N -0.71 -24.05 4.40 -442.53 -1.95 -26.00 16 18 C 0.52 17.42 7.14 87.66 0.63 18.05 16 19 O -0.57 -21.93 15.62 -3.02 -0.05 -21.98 16 20 C -0.12 -3.13 2.68 -11.46 -0.03 -3.16 16 21 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 22 C -0.09 -2.06 4.46 30.62 0.14 -1.92 16 23 C -0.13 -1.82 6.08 30.67 0.19 -1.63 16 24 C 0.11 1.18 6.35 86.36 0.55 1.73 16 25 N -0.62 -12.53 2.97 -836.92 -2.49 -15.02 16 26 C 0.70 16.91 8.57 179.05 1.53 18.44 16 27 N -0.85 -11.27 8.74 -184.75 -1.61 -12.88 16 28 O -0.64 -22.88 16.60 -3.98 -0.07 -22.95 16 29 C 0.15 3.56 5.57 86.36 0.48 4.04 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.86 6.37 -2.39 -0.02 1.85 16 34 H 0.03 1.10 6.76 -2.39 -0.02 1.08 16 35 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 1.57 6.65 -2.39 -0.02 1.56 16 41 H 0.37 20.83 7.33 -92.71 -0.68 20.15 16 42 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.40 13.69 8.06 -92.71 -0.75 12.95 16 44 H 0.06 1.47 8.07 -2.39 -0.02 1.45 16 45 H 0.08 1.59 8.13 -2.39 -0.02 1.57 16 46 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.11 0.52 5.73 -2.39 -0.01 0.51 16 50 H 0.41 2.34 6.41 -92.71 -0.59 1.74 16 51 H 0.42 4.93 8.93 -92.70 -0.83 4.10 16 52 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 53 H 0.08 2.26 6.49 -2.38 -0.02 2.24 16 Total: -1.00 -79.44 413.66 -0.87 -80.31 By element: Atomic # 1 Polarization: 51.80 SS G_CDS: -1.90 Total: 49.89 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.76 Total: 19.86 kcal Atomic # 7 Polarization: -146.62 SS G_CDS: -7.63 Total: -154.25 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -0.11 Total: -44.93 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -79.44 -0.87 -80.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714921728.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.081 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds