Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 C 1.52995 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47079 * 179.97438 * 4 3 2 6 6 H 1.08993 * 109.47349 * 303.31548 * 5 4 3 7 7 N 1.46497 * 109.47323 * 63.31917 * 5 4 3 8 8 C 1.34780 * 119.99827 * 59.99446 * 7 5 4 9 9 N 1.34779 * 119.99639 * 180.02562 * 8 7 5 10 10 O 1.21583 * 120.00187 * 0.02562 * 8 7 5 11 11 C 1.50707 * 109.47096 * 183.31616 * 5 4 3 12 12 O 1.21274 * 119.99927 * 262.51025 * 11 5 4 13 13 N 1.34776 * 119.99708 * 82.50917 * 11 5 4 14 14 C 1.46494 * 120.00214 * 4.92201 * 13 11 5 15 15 C 1.53002 * 109.47263 * 83.88072 * 14 13 11 16 16 C 1.46504 * 119.99825 * 184.92407 * 13 11 5 17 17 H 1.09003 * 110.91450 * 354.34973 * 16 13 11 18 18 C 1.55155 * 111.00776 * 118.25279 * 16 13 11 19 19 C 1.54314 * 103.10388 * 153.66696 * 18 16 13 20 20 N 1.47029 * 107.27065 * 337.71979 * 19 18 16 21 21 C 1.36944 * 125.64734 * 178.90835 * 20 19 18 22 22 H 1.07998 * 119.99395 * 180.02562 * 21 20 19 23 23 C 1.38809 * 119.99892 * 0.02562 * 21 20 19 24 24 N 1.31617 * 120.00170 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99634 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47380 * 60.00038 * 25 23 21 27 27 H 1.48503 * 109.47037 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47387 * 299.99953 * 25 23 21 29 29 C 1.47420 * 108.70402 * 358.93897 * 20 19 18 30 30 H 1.08999 * 109.46871 * 300.00106 * 1 2 3 31 31 H 1.09005 * 109.47366 * 60.00073 * 1 2 3 32 32 H 1.08995 * 109.46909 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46941 * 240.00440 * 2 1 3 34 34 H 1.08998 * 109.46751 * 120.00054 * 2 1 3 35 35 H 1.09007 * 109.47211 * 59.99905 * 3 2 1 36 36 H 1.08998 * 109.47361 * 300.00203 * 3 2 1 37 37 H 1.09005 * 109.47104 * 60.00517 * 4 3 2 38 38 H 1.08998 * 109.47331 * 300.00395 * 4 3 2 39 39 H 0.97000 * 119.99999 * 240.00496 * 7 5 4 40 40 H 0.97001 * 119.99760 * 359.97438 * 9 8 7 41 41 H 0.96995 * 119.99526 * 180.02562 * 9 8 7 42 42 H 1.09007 * 109.47078 * 203.88101 * 14 13 11 43 43 H 1.09000 * 109.47477 * 323.87678 * 14 13 11 44 44 H 1.08999 * 109.46507 * 294.13346 * 15 14 13 45 45 H 1.08999 * 109.46854 * 54.13246 * 15 14 13 46 46 H 1.08996 * 109.47214 * 174.13277 * 15 14 13 47 47 H 1.08998 * 110.71830 * 35.20956 * 18 16 13 48 48 H 1.09002 * 110.71985 * 272.11967 * 18 16 13 49 49 H 1.09001 * 109.88572 * 97.13627 * 19 18 16 50 50 H 1.09003 * 109.88577 * 218.15150 * 19 18 16 51 51 H 0.97001 * 120.00040 * 180.02562 * 24 23 21 52 52 H 1.09003 * 110.36849 * 142.96445 * 29 20 19 53 53 H 1.09001 * 110.36864 * 265.18577 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6693 3.4152 -0.8592 7 7 3.6575 3.5530 1.2335 8 6 4.0486 3.0698 2.4294 9 7 3.6595 3.6840 3.5643 10 8 4.7524 2.0799 2.4844 11 6 5.5848 2.8858 -0.0816 12 8 6.2467 3.0036 0.9278 13 7 6.1949 2.7557 -1.2762 14 6 5.3988 2.7219 -2.5055 15 6 5.0934 4.1522 -2.9548 16 6 7.6544 2.6479 -1.3455 17 1 8.1021 2.7890 -0.3617 18 6 8.0832 1.2903 -1.9621 19 6 9.4657 1.6041 -2.5718 20 7 9.5258 3.0564 -2.7927 21 6 10.5961 3.7427 -3.3015 22 1 10.5411 4.8141 -3.4255 23 6 11.7517 3.0611 -3.6579 24 7 11.8189 1.7554 -3.5064 25 14 13.2118 3.9973 -4.3513 26 1 13.6771 4.9964 -3.3561 27 1 14.3130 3.0466 -4.6496 28 1 12.8065 4.6932 -5.5990 29 6 8.2434 3.6517 -2.3751 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.9337 0.9286 -0.8892 38 1 3.9330 0.9288 0.8908 39 1 3.0962 4.3428 1.1896 40 1 3.0983 4.4739 3.5203 41 1 3.9413 3.3364 4.4249 42 1 5.9584 2.2072 -3.2867 43 1 4.4646 2.1923 -2.3190 44 1 4.4463 4.6330 -2.2212 45 1 6.0243 4.7125 -3.0410 46 1 4.5919 4.1298 -3.9223 47 1 7.3817 0.9797 -2.7364 48 1 8.1668 0.5253 -1.1901 49 1 10.2528 1.3013 -1.8812 50 1 9.5812 1.0776 -3.5192 51 1 12.6265 1.2792 -3.7551 52 1 8.4101 4.6214 -1.9062 53 1 7.5763 3.7545 -3.2310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715049650.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -70.610454 kcal Electronic energy + Delta-G solvation = -31919.969130 eV Core-core repulsion = 27826.237724 eV Total energy + Delta-G solvation = -4093.731407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82749 -40.37069 -38.82453 -37.18947 -36.55466 -35.16543 -34.45923 -34.10913 -31.76563 -31.38803 -30.64070 -29.24881 -27.58952 -26.25046 -24.46183 -23.65038 -22.93318 -22.04817 -21.83975 -21.16710 -19.89402 -19.65074 -18.86177 -18.23762 -18.02334 -17.19049 -16.73242 -16.55419 -16.14995 -15.93806 -15.68644 -15.48109 -15.15930 -14.95836 -14.75361 -14.59164 -14.29708 -14.23987 -14.07427 -13.82668 -13.73006 -13.49464 -13.38672 -12.97012 -12.91229 -12.68916 -12.48380 -12.29433 -12.21694 -12.10496 -12.09167 -11.96108 -11.84319 -11.76877 -11.71379 -11.45843 -11.41242 -11.16641 -10.77143 -10.72306 -10.42974 -9.82354 -9.57756 -8.92024 -7.86163 -5.23311 1.44528 1.48888 1.54962 1.62163 1.81662 2.19349 2.46428 2.51352 3.32050 3.46811 3.67087 3.70285 3.86537 3.91375 3.96694 3.99727 4.13553 4.16585 4.20269 4.28386 4.43569 4.47481 4.52533 4.55029 4.60918 4.66275 4.83463 4.86393 4.90387 4.91557 4.99237 5.04538 5.05394 5.08055 5.17137 5.27367 5.36813 5.40353 5.42754 5.49138 5.54560 5.56439 5.59262 5.68687 5.70436 5.99892 6.13251 6.16480 6.54134 7.06796 7.23405 7.30599 7.73455 7.89079 8.38099 9.23951 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002722 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.475313 B =10282.834506 C =10891.533630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.100 4.100 4 C -0.131 4.131 5 C 0.163 3.837 6 H 0.151 0.849 7 N -0.720 5.720 8 C 0.699 3.301 9 N -0.855 5.855 10 O -0.617 6.617 11 C 0.491 3.509 12 O -0.562 6.562 13 N -0.596 5.596 14 C 0.090 3.910 15 C -0.173 4.173 16 C 0.141 3.859 17 H 0.064 0.936 18 C -0.134 4.134 19 C 0.191 3.809 20 N -0.625 5.625 21 C -0.245 4.245 22 H 0.083 0.917 23 C -0.066 4.066 24 N -0.952 5.952 25 Si 0.982 3.018 26 H -0.280 1.280 27 H -0.294 1.294 28 H -0.271 1.271 29 C 0.136 3.864 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.418 0.582 40 H 0.411 0.589 41 H 0.415 0.585 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.062 0.938 49 H 0.004 0.996 50 H 0.018 0.982 51 H 0.248 0.752 52 H 0.028 0.972 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.137 3.911 5.386 30.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.138 4.138 4 C -0.169 4.169 5 C 0.053 3.947 6 H 0.168 0.832 7 N -0.378 5.378 8 C 0.397 3.603 9 N -0.425 5.425 10 O -0.495 6.495 11 C 0.279 3.721 12 O -0.438 6.438 13 N -0.329 5.329 14 C -0.032 4.032 15 C -0.231 4.231 16 C 0.036 3.964 17 H 0.083 0.917 18 C -0.173 4.173 19 C 0.065 3.935 20 N -0.352 5.352 21 C -0.374 4.374 22 H 0.101 0.899 23 C -0.259 4.259 24 N -0.601 5.601 25 Si 0.810 3.190 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.197 1.197 29 C 0.010 3.990 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.256 0.744 40 H 0.242 0.758 41 H 0.247 0.753 42 H 0.099 0.901 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.112 0.888 47 H 0.107 0.893 48 H 0.080 0.920 49 H 0.022 0.978 50 H 0.037 0.963 51 H 0.057 0.943 52 H 0.046 0.954 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.025 3.114 5.735 29.750 hybrid contribution 1.485 0.638 0.306 1.645 sum -27.540 3.751 6.041 28.444 Atomic orbital electron populations 1.21737 0.94764 1.01789 1.02233 1.21526 0.96656 0.96915 1.01442 1.21482 0.92040 0.97104 1.03166 1.21954 0.97924 0.93778 1.03277 1.20893 0.88355 0.96940 0.88489 0.83176 1.44540 1.56435 1.33779 1.03081 1.16212 0.79246 0.82900 0.81919 1.42783 1.58365 1.34507 1.06823 1.90963 1.42317 1.29649 1.86616 1.21821 0.92375 0.75588 0.82356 1.90741 1.67666 1.49264 1.36136 1.47951 1.05249 1.72393 1.07282 1.21955 0.96383 0.99137 0.85703 1.22361 1.02050 0.95567 1.03131 1.21882 0.80711 0.95536 0.98308 0.91724 1.23032 0.97659 0.96595 1.00045 1.20828 0.91972 0.84155 0.96505 1.44670 1.12231 1.03664 1.74620 1.19415 0.91869 0.91786 1.34281 0.89883 1.25707 1.00944 0.96794 1.02485 1.70184 1.28038 1.07402 1.54434 0.85104 0.78366 0.77092 0.78463 1.20609 1.22000 1.19706 1.22034 0.87361 0.94407 0.95205 0.92868 0.91523 0.92890 0.91666 0.94066 0.92061 0.89157 0.90052 0.92722 0.74420 0.75807 0.75300 0.90129 0.87168 0.91009 0.93858 0.88817 0.89284 0.91964 0.97757 0.96346 0.94314 0.95384 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.73 5.93 30.60 0.18 -1.55 16 3 C -0.10 -1.23 5.09 30.59 0.16 -1.07 16 4 C -0.13 -2.50 4.29 30.59 0.13 -2.37 16 5 C 0.16 3.11 2.19 44.25 0.10 3.21 16 6 H 0.15 1.56 5.57 -2.39 -0.01 1.54 16 7 N -0.72 -12.46 4.59 -461.41 -2.12 -14.58 16 8 C 0.70 17.42 7.62 179.05 1.37 18.79 16 9 N -0.86 -13.06 8.88 -184.74 -1.64 -14.70 16 10 O -0.62 -23.06 12.96 18.68 0.24 -22.82 16 11 C 0.49 15.28 6.63 87.66 0.58 15.87 16 12 O -0.56 -24.05 13.00 19.65 0.26 -23.80 16 13 N -0.60 -17.59 2.53 -789.19 -2.00 -19.58 16 14 C 0.09 1.75 4.77 86.38 0.41 2.16 16 15 C -0.17 -2.78 9.75 71.98 0.70 -2.08 16 16 C 0.14 5.61 3.46 46.55 0.16 5.77 16 17 H 0.06 3.08 7.03 -2.39 -0.02 3.07 16 18 C -0.13 -5.42 6.49 31.78 0.21 -5.21 16 19 C 0.19 9.99 5.37 86.72 0.47 10.46 16 20 N -0.62 -33.59 3.40 -691.02 -2.35 -35.93 16 21 C -0.24 -14.18 10.28 84.03 0.86 -13.31 16 22 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 23 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 24 N -0.95 -59.08 10.31 21.65 0.22 -58.86 16 25 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 C 0.14 5.82 6.21 87.03 0.54 6.36 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.78 7.70 -2.38 -0.02 0.76 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 1.43 6.91 -2.38 -0.02 1.41 16 38 H 0.05 1.57 6.08 -2.39 -0.01 1.56 16 39 H 0.42 3.48 8.84 -92.71 -0.82 2.66 16 40 H 0.41 2.82 8.84 -92.71 -0.82 2.00 16 41 H 0.42 6.21 8.93 -92.71 -0.83 5.38 16 42 H 0.08 1.75 6.39 -2.38 -0.02 1.74 16 43 H 0.11 1.37 5.40 -2.39 -0.01 1.36 16 44 H 0.07 0.86 6.85 -2.39 -0.02 0.84 16 45 H 0.04 0.97 6.04 -2.39 -0.01 0.95 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 3.06 6.59 -2.39 -0.02 3.04 16 48 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 49 H 0.00 0.25 7.38 -2.39 -0.02 0.23 16 50 H 0.02 1.04 7.51 -2.39 -0.02 1.02 16 51 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 52 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.05 2.04 5.29 -2.39 -0.01 2.03 16 Total: -1.00 -89.25 400.79 0.17 -89.08 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -1.52 Total: 19.51 kcal Atomic # 6 Polarization: 25.74 SS G_CDS: 7.04 Total: 32.78 kcal Atomic # 7 Polarization: -135.77 SS G_CDS: -7.88 Total: -143.65 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: 0.50 Total: -46.61 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -89.25 0.17 -89.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715049650.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.471 kcal (2) G-P(sol) polarization free energy of solvation -89.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds