Wall clock time and date at job start Sat Apr 11 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47009 * 2 1 4 4 N 1.46501 * 109.47247 * 179.97438 * 3 2 1 5 5 C 1.34773 * 120.00530 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99355 * 0.02562 * 5 4 3 7 7 N 1.34769 * 120.00682 * 179.72539 * 5 4 3 8 8 C 1.46500 * 120.00409 * 180.27796 * 7 5 4 9 9 C 1.53003 * 109.47052 * 297.65037 * 8 7 5 10 10 C 1.52994 * 109.47147 * 57.65221 * 8 7 5 11 11 C 1.50698 * 109.47162 * 177.65175 * 8 7 5 12 12 O 1.21281 * 120.00050 * 136.70119 * 11 8 7 13 13 N 1.34782 * 120.00221 * 316.70488 * 11 8 7 14 14 C 1.47425 * 125.64581 * 3.32849 * 13 11 8 15 15 C 1.54685 * 104.94108 * 204.07979 * 14 13 11 16 16 C 1.55160 * 101.67917 * 323.27610 * 15 14 13 17 17 C 1.47022 * 125.64993 * 183.64326 * 13 11 8 18 18 H 1.09004 * 109.88441 * 59.48500 * 17 13 11 19 19 C 1.52998 * 109.88104 * 298.31541 * 17 13 11 20 20 N 1.46503 * 109.46878 * 75.73479 * 19 17 13 21 21 C 1.36937 * 119.99867 * 187.45942 * 20 19 17 22 22 H 1.08005 * 120.00203 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00016 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00186 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99721 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47067 * 59.99928 * 25 23 21 27 27 H 1.48501 * 109.46919 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47086 * 299.99667 * 25 23 21 29 29 H 1.08995 * 109.47543 * 299.99724 * 1 2 3 30 30 H 1.08999 * 109.47041 * 60.00552 * 1 2 3 31 31 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47009 * 239.99738 * 2 1 3 33 33 H 1.09004 * 109.47003 * 119.99929 * 2 1 3 34 34 H 1.08997 * 109.47449 * 60.00008 * 3 2 1 35 35 H 1.09004 * 109.47180 * 299.99821 * 3 2 1 36 36 H 0.97006 * 120.00029 * 0.02562 * 4 3 2 37 37 H 0.97006 * 119.99839 * 0.27783 * 7 5 4 38 38 H 1.09000 * 109.46876 * 59.99689 * 9 8 7 39 39 H 1.09000 * 109.46999 * 179.97438 * 9 8 7 40 40 H 1.09001 * 109.47252 * 299.99998 * 9 8 7 41 41 H 1.09001 * 109.46955 * 60.00024 * 10 8 7 42 42 H 1.09000 * 109.47284 * 180.02562 * 10 8 7 43 43 H 1.09003 * 109.47092 * 299.99882 * 10 8 7 44 44 H 1.09002 * 110.36702 * 323.00589 * 14 13 11 45 45 H 1.08997 * 110.36409 * 85.32965 * 14 13 11 46 46 H 1.09003 * 111.10607 * 205.11182 * 15 14 13 47 47 H 1.09000 * 110.85646 * 81.33575 * 15 14 13 48 48 H 1.08991 * 110.72029 * 276.97659 * 16 15 14 49 49 H 1.08994 * 110.87314 * 153.76623 * 16 15 14 50 50 H 1.09003 * 109.46850 * 195.72727 * 19 17 13 51 51 H 1.09000 * 109.47278 * 315.73202 * 19 17 13 52 52 H 0.96994 * 120.00134 * 7.45571 * 20 19 17 53 53 H 0.96997 * 120.00158 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1789 2.6096 0.0002 6 8 3.5708 3.6626 -0.0002 7 7 5.5265 2.6098 0.0064 8 6 6.2590 3.8785 0.0121 9 6 5.9401 4.6572 -1.2657 10 6 5.8400 4.7038 1.2303 11 6 7.7393 3.6036 0.0765 12 8 8.5037 4.2310 -0.6255 13 7 8.2138 2.6605 0.9144 14 6 7.3961 1.7801 1.7686 15 6 8.3344 1.3631 2.9254 16 6 9.6944 1.2229 2.1918 17 6 9.6328 2.3437 1.1326 18 1 10.1581 3.2268 1.4964 19 6 10.2649 1.8600 -0.1741 20 7 10.4969 3.0055 -1.0575 21 6 10.9146 2.8030 -2.3458 22 1 11.0734 1.7988 -2.7105 23 6 11.1339 3.8882 -3.1830 24 7 10.9400 5.1119 -2.7388 25 14 11.7030 3.6118 -4.9407 26 1 10.6944 2.7977 -5.6653 27 1 11.8624 4.9221 -5.6212 28 1 13.0041 2.8960 -4.9329 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.9900 0.6024 0.0006 37 1 6.0116 1.7697 0.0070 38 1 4.8694 4.8560 -1.3124 39 1 6.4847 5.6014 -1.2613 40 1 6.2386 4.0693 -2.1337 41 1 6.0673 4.1489 2.1406 42 1 6.3847 5.6479 1.2343 43 1 4.7693 4.9026 1.1837 44 1 6.5333 2.3221 2.1560 45 1 7.0736 0.9018 1.2093 46 1 8.0246 0.4121 3.3588 47 1 8.3801 2.1409 3.6876 48 1 9.7766 0.2461 1.7152 49 1 10.5248 1.3866 2.8785 50 1 11.2141 1.3693 0.0413 51 1 9.5935 1.1542 -0.6630 52 1 10.3546 3.9073 -0.7299 53 1 11.0936 5.8702 -3.3238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716791032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:46 Heat of formation + Delta-G solvation = -57.401678 kcal Electronic energy + Delta-G solvation = -32253.392869 eV Core-core repulsion = 28160.234237 eV Total energy + Delta-G solvation = -4093.158631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04302 -40.66992 -38.67146 -37.33720 -36.38886 -35.86436 -33.88411 -33.23601 -32.40996 -31.85362 -30.32482 -28.29112 -26.98857 -26.68643 -25.47315 -24.28961 -22.84812 -22.49159 -21.87025 -21.29983 -20.23711 -19.29018 -18.96531 -18.12669 -17.54016 -16.82029 -16.76780 -16.60424 -16.01726 -15.95549 -15.65931 -15.35614 -15.27704 -14.98099 -14.73562 -14.68387 -14.22232 -14.03423 -13.78067 -13.61279 -13.49677 -13.46663 -13.22476 -13.08586 -13.05699 -12.86546 -12.83870 -12.76234 -12.62484 -12.38096 -12.30143 -12.01854 -11.96522 -11.91258 -11.68937 -11.59079 -11.47489 -11.19127 -10.86968 -10.39330 -10.35170 -9.83362 -9.53145 -8.76056 -7.78623 -5.05205 1.37023 1.41290 1.45791 1.51637 1.97852 1.99314 2.16896 2.59817 3.21710 3.38630 3.49465 3.68404 3.73467 3.91460 3.97930 3.98475 4.08478 4.15143 4.25307 4.41308 4.42401 4.44152 4.53555 4.65623 4.65839 4.73863 4.74190 4.80522 4.81898 4.84355 4.87176 4.90857 4.94931 5.04895 5.12746 5.17306 5.19069 5.20268 5.22443 5.30674 5.36625 5.40038 5.42707 5.50104 5.59763 5.62180 5.94426 6.38068 6.63091 7.04928 7.31593 7.51840 7.58863 8.36664 8.61355 9.42845 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011130 B = 0.003381 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.012440 B = 8278.902964 C = 9273.072440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.138 3.862 4 N -0.733 5.733 5 C 0.705 3.295 6 O -0.618 6.618 7 N -0.727 5.727 8 C 0.199 3.801 9 C -0.136 4.136 10 C -0.148 4.148 11 C 0.503 3.497 12 O -0.507 6.507 13 N -0.612 5.612 14 C 0.086 3.914 15 C -0.118 4.118 16 C -0.113 4.113 17 C 0.130 3.870 18 H 0.047 0.953 19 C 0.143 3.857 20 N -0.732 5.732 21 C -0.241 4.241 22 H 0.064 0.936 23 C -0.075 4.075 24 N -0.953 5.953 25 Si 0.964 3.036 26 H -0.284 1.284 27 H -0.298 1.298 28 H -0.276 1.276 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.410 0.590 37 H 0.406 0.594 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.118 0.882 47 H 0.078 0.922 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.023 0.977 51 H 0.014 0.986 52 H 0.386 0.614 53 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.899 -15.575 16.206 29.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.014 3.986 4 N -0.389 5.389 5 C 0.406 3.594 6 O -0.498 6.498 7 N -0.387 5.387 8 C 0.108 3.892 9 C -0.195 4.195 10 C -0.206 4.206 11 C 0.288 3.712 12 O -0.378 6.378 13 N -0.348 5.348 14 C -0.035 4.035 15 C -0.155 4.155 16 C -0.151 4.151 17 C 0.026 3.974 18 H 0.065 0.935 19 C 0.016 3.984 20 N -0.381 5.381 21 C -0.374 4.374 22 H 0.082 0.918 23 C -0.268 4.268 24 N -0.603 5.603 25 Si 0.794 3.206 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.202 1.202 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.246 0.754 37 H 0.244 0.756 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.137 0.863 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.113 0.887 50 H 0.041 0.959 51 H 0.032 0.968 52 H 0.225 0.775 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.022 -14.283 15.626 28.461 hybrid contribution 1.070 0.099 -1.566 1.899 sum -17.952 -14.184 14.059 26.854 Atomic orbital electron populations 1.21685 0.94212 1.02728 1.02180 1.21682 0.97082 0.93980 1.03651 1.21309 0.77423 0.98565 1.01339 1.45054 1.07650 1.06685 1.79545 1.16014 0.81304 0.84710 0.77418 1.90849 1.68437 1.31490 1.59038 1.45280 1.04670 1.08577 1.80176 1.20070 0.86068 0.85158 0.97900 1.21875 1.02366 0.99812 0.95441 1.22136 1.03963 0.99275 0.95240 1.20625 0.90321 0.80595 0.79634 1.90965 1.57892 1.48472 1.40499 1.48578 1.07543 1.36053 1.42638 1.22761 0.95217 0.93689 0.91845 1.22754 0.92785 1.03964 0.96043 1.22618 0.99746 0.97023 0.95744 1.21878 0.81851 0.98404 0.95277 0.93471 1.21181 0.96327 0.90436 0.90489 1.42991 1.80081 1.05305 1.09727 1.19481 1.35532 0.92073 0.90304 0.91841 1.25494 1.04228 0.95256 1.01841 1.69932 1.56771 0.97515 1.36093 0.85354 0.78288 0.75970 0.80967 1.21078 1.22434 1.20217 0.92265 0.92892 0.91162 0.90844 0.89865 0.92178 0.93340 0.75365 0.75596 0.90041 0.92684 0.94655 0.90392 0.92254 0.89367 0.89294 0.89967 0.86333 0.90290 0.89201 0.88713 0.95925 0.96770 0.77537 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.47 16 2 C -0.13 -1.04 6.05 30.59 0.19 -0.86 16 3 C 0.14 2.02 5.67 86.38 0.49 2.51 16 4 N -0.73 -11.73 5.56 -478.55 -2.66 -14.39 16 5 C 0.71 17.16 7.99 179.06 1.43 18.59 16 6 O -0.62 -19.57 12.55 -4.01 -0.05 -19.63 16 7 N -0.73 -17.54 3.77 -441.46 -1.67 -19.20 16 8 C 0.20 6.28 0.63 2.86 0.00 6.29 16 9 C -0.14 -5.14 7.86 71.98 0.57 -4.58 16 10 C -0.15 -4.10 8.22 71.98 0.59 -3.51 16 11 C 0.50 19.12 6.49 87.66 0.57 19.69 16 12 O -0.51 -26.29 12.22 -3.03 -0.04 -26.33 16 13 N -0.61 -18.12 3.04 -788.48 -2.40 -20.52 16 14 C 0.09 1.48 5.11 86.78 0.44 1.92 16 15 C -0.12 -1.48 7.07 31.91 0.23 -1.25 16 16 C -0.11 -2.10 6.45 31.78 0.20 -1.89 16 17 C 0.13 4.13 3.08 45.34 0.14 4.27 16 18 H 0.05 1.76 8.11 -2.38 -0.02 1.74 16 19 C 0.14 6.00 5.61 86.38 0.48 6.49 16 20 N -0.73 -40.98 4.11 -343.44 -1.41 -42.39 16 21 C -0.24 -14.76 9.99 84.03 0.84 -13.92 16 22 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 23 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 24 N -0.95 -64.33 13.06 21.65 0.28 -64.05 16 25 Si 0.96 50.22 29.55 68.60 2.03 52.25 16 26 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.30 -15.62 7.11 99.48 0.71 -14.92 16 28 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.41 4.06 8.49 -92.70 -0.79 3.28 16 37 H 0.41 8.19 5.84 -92.70 -0.54 7.65 16 38 H 0.08 2.94 6.34 -2.39 -0.02 2.93 16 39 H 0.05 2.26 7.93 -2.39 -0.02 2.25 16 40 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.78 6.37 -2.39 -0.02 1.76 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 2.56 5.99 -2.39 -0.01 2.55 16 44 H 0.09 1.39 5.34 -2.39 -0.01 1.38 16 45 H 0.08 1.07 7.02 -2.39 -0.02 1.05 16 46 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.50 7.85 -2.39 -0.02 1.48 16 49 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.02 0.93 8.09 -2.39 -0.02 0.91 16 51 H 0.01 0.60 8.14 -2.39 -0.02 0.59 16 52 H 0.39 23.69 5.13 -92.71 -0.48 23.21 16 53 H 0.24 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -87.16 405.30 0.56 -86.60 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.88 Total: 38.67 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 7.35 Total: 28.98 kcal Atomic # 7 Polarization: -152.70 SS G_CDS: -7.85 Total: -160.55 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.09 Total: -45.95 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.03 Total: 52.25 kcal Total: -87.16 0.56 -86.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716791032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.203 kcal (2) G-P(sol) polarization free energy of solvation -87.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds