Wall clock time and date at job start Sat Apr 11 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47090 * 2 1 4 4 N 1.46503 * 109.47124 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00034 * 180.02562 * 4 3 2 6 6 O 1.21583 * 119.99825 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00061 * 179.97438 * 5 4 3 8 8 C 1.46494 * 120.00053 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47016 * 65.79892 * 8 7 5 10 10 C 1.52999 * 109.47024 * 305.80110 * 8 7 5 11 11 C 1.50698 * 109.47040 * 185.79960 * 8 7 5 12 12 O 1.21278 * 120.00269 * 225.45061 * 11 8 7 13 13 N 1.34781 * 119.99901 * 45.46115 * 11 8 7 14 14 C 1.47013 * 125.65045 * 355.16267 * 13 11 8 15 15 C 1.54322 * 107.27493 * 181.04312 * 14 13 11 16 16 H 1.09005 * 110.71985 * 263.65468 * 15 14 13 17 17 N 1.46493 * 110.72217 * 140.55572 * 15 14 13 18 18 C 1.36946 * 120.00217 * 86.45657 * 17 15 14 19 19 H 1.08001 * 119.99660 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00124 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00558 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46999 * 90.00205 * 22 20 18 24 24 H 1.48495 * 109.47128 * 209.99758 * 22 20 18 25 25 H 1.48497 * 109.47175 * 330.00203 * 22 20 18 26 26 C 1.55441 * 102.96560 * 22.19220 * 15 14 13 27 27 H 1.09000 * 111.01656 * 82.52930 * 26 15 14 28 28 C 1.52999 * 111.11804 * 206.46497 * 26 15 14 29 29 C 1.47426 * 125.64409 * 175.14394 * 13 11 8 30 30 H 1.08998 * 109.47113 * 300.00004 * 1 2 3 31 31 H 1.08998 * 109.47500 * 59.99853 * 1 2 3 32 32 H 1.09003 * 109.47428 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47113 * 239.99996 * 2 1 3 34 34 H 1.08998 * 109.47500 * 120.00147 * 2 1 3 35 35 H 1.08998 * 109.47146 * 60.00016 * 3 2 1 36 36 H 1.09002 * 109.47258 * 299.99675 * 3 2 1 37 37 H 0.97004 * 120.00110 * 359.97438 * 4 3 2 38 38 H 0.97004 * 120.00083 * 359.97438 * 7 5 4 39 39 H 1.09006 * 109.47098 * 180.02562 * 9 8 7 40 40 H 1.08999 * 109.47757 * 300.00053 * 9 8 7 41 41 H 1.08997 * 109.47183 * 60.00632 * 9 8 7 42 42 H 1.09005 * 109.47278 * 309.16908 * 10 8 7 43 43 H 1.09001 * 109.47214 * 69.17090 * 10 8 7 44 44 H 1.09004 * 109.47590 * 189.17116 * 10 8 7 45 45 H 1.09007 * 109.88351 * 300.46121 * 14 13 11 46 46 H 1.09001 * 109.88084 * 61.47128 * 14 13 11 47 47 H 0.96997 * 120.00497 * 266.45280 * 17 15 14 48 48 H 0.97000 * 120.00465 * 180.02562 * 21 20 18 49 49 H 1.09003 * 109.47158 * 173.56009 * 28 26 15 50 50 H 1.09003 * 109.47128 * 293.56069 * 28 26 15 51 51 H 1.09003 * 109.47371 * 53.55778 * 28 26 15 52 52 H 1.08994 * 110.36725 * 274.72142 * 29 13 11 53 53 H 1.09000 * 110.36979 * 36.94754 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1788 2.6098 -0.0002 6 8 3.5709 3.6627 0.0002 7 7 5.5266 2.6098 -0.0003 8 6 6.2591 3.8784 0.0008 9 6 6.0020 4.6147 1.3170 10 6 5.7833 4.7430 -1.1685 11 6 7.7344 3.6068 -0.1431 12 8 8.5293 4.1828 0.5690 13 7 8.1705 2.7239 -1.0633 14 6 7.3174 1.8859 -1.9186 15 6 8.2516 1.0200 -2.7897 16 1 8.4003 1.4773 -3.7680 17 7 7.7189 -0.3375 -2.9298 18 6 6.8183 -0.6207 -3.9218 19 1 6.5004 0.1569 -4.6007 20 6 6.3132 -1.9068 -4.0542 21 7 6.7001 -2.8543 -3.2267 22 14 5.0841 -2.2928 -5.4070 23 1 5.8113 -2.7197 -6.6294 24 1 4.1832 -3.3853 -4.9602 25 1 4.2810 -1.0803 -5.7069 26 6 9.5762 1.0094 -1.9765 27 1 9.5453 0.2568 -1.1886 28 6 10.7831 0.7927 -2.8916 29 6 9.5820 2.4387 -1.3792 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9900 0.6025 -0.0006 38 1 6.0117 1.7697 -0.0002 39 1 6.5467 5.5589 1.3176 40 1 4.9350 4.8111 1.4212 41 1 6.3411 3.9988 2.1500 42 1 5.8143 4.1590 -2.0884 43 1 4.7617 5.0747 -0.9829 44 1 6.4349 5.6112 -1.2672 45 1 6.6878 1.2457 -1.3006 46 1 6.6947 2.5169 -2.5528 47 1 8.0041 -1.0358 -2.3200 48 1 6.3474 -3.7531 -3.3195 49 1 11.7012 0.9036 -2.3145 50 1 10.7406 -0.2098 -3.3177 51 1 10.7673 1.5297 -3.6945 52 1 9.9590 3.1538 -2.1103 53 1 10.1871 2.4687 -0.4731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724952160.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:24 Heat of formation + Delta-G solvation = -69.576186 kcal Electronic energy + Delta-G solvation = -32141.991441 eV Core-core repulsion = 28048.304884 eV Total energy + Delta-G solvation = -4093.686557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10813 -40.68659 -39.16354 -37.36747 -36.19528 -35.85333 -33.90614 -33.83770 -32.46567 -31.90563 -29.16482 -28.43500 -27.75298 -26.92978 -25.93800 -24.38902 -22.91399 -22.51259 -21.52341 -21.37208 -20.55811 -19.11721 -19.04871 -18.46019 -17.41550 -17.07170 -16.82587 -16.55215 -16.23896 -15.99265 -15.68376 -15.49028 -15.38228 -15.17064 -14.75060 -14.60655 -14.23650 -14.02804 -13.81478 -13.75392 -13.58820 -13.46098 -13.31409 -13.11482 -13.02341 -12.90827 -12.83591 -12.83250 -12.79352 -12.34391 -12.23079 -12.12495 -12.01258 -12.00361 -11.74735 -11.66337 -11.44166 -11.32950 -10.97458 -10.72183 -10.37644 -9.85654 -9.72485 -9.02769 -7.91942 -5.20721 1.13499 1.49681 1.52483 1.58337 1.78281 1.85924 2.14427 2.57527 3.13777 3.19965 3.39585 3.62939 3.79668 3.86586 3.89201 3.93362 3.94439 4.09539 4.22810 4.30945 4.37147 4.43338 4.52383 4.62448 4.65484 4.68242 4.70581 4.73247 4.75347 4.79461 4.84720 4.87814 4.92388 5.05749 5.10374 5.14144 5.16576 5.19243 5.24611 5.25919 5.33412 5.35359 5.40261 5.49546 5.57497 5.58231 5.86369 6.28268 6.36062 6.89934 6.97115 7.37928 7.54200 8.07907 8.32912 9.30063 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006328 B = 0.005741 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4423.520294 B = 4875.877287 C = 8653.111302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.142 3.858 4 N -0.740 5.740 5 C 0.708 3.292 6 O -0.614 6.614 7 N -0.734 5.734 8 C 0.185 3.815 9 C -0.136 4.136 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.561 6.561 13 N -0.605 5.605 14 C 0.087 3.913 15 C 0.171 3.829 16 H 0.066 0.934 17 N -0.717 5.717 18 C -0.236 4.236 19 H 0.074 0.926 20 C -0.059 4.059 21 N -0.960 5.960 22 Si 0.957 3.043 23 H -0.293 1.293 24 H -0.298 1.298 25 H -0.273 1.273 26 C -0.102 4.102 27 H 0.076 0.924 28 C -0.128 4.128 29 C 0.113 3.887 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.405 0.595 38 H 0.403 0.597 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.378 0.622 48 H 0.250 0.750 49 H 0.073 0.927 50 H 0.048 0.952 51 H 0.063 0.937 52 H 0.083 0.917 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.712 8.876 6.272 11.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.395 5.395 5 C 0.408 3.592 6 O -0.494 6.494 7 N -0.395 5.395 8 C 0.096 3.904 9 C -0.194 4.194 10 C -0.210 4.210 11 C 0.319 3.681 12 O -0.439 6.439 13 N -0.338 5.338 14 C -0.039 4.039 15 C 0.060 3.940 16 H 0.084 0.916 17 N -0.356 5.356 18 C -0.368 4.368 19 H 0.092 0.908 20 C -0.252 4.252 21 N -0.610 5.610 22 Si 0.788 3.212 23 H -0.220 1.220 24 H -0.225 1.225 25 H -0.198 1.198 26 C -0.122 4.122 27 H 0.095 0.905 28 C -0.186 4.186 29 C -0.009 4.009 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.240 0.760 38 H 0.242 0.758 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.210 0.790 48 H 0.059 0.941 49 H 0.092 0.908 50 H 0.067 0.933 51 H 0.082 0.918 52 H 0.101 0.899 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.994 10.185 6.535 12.466 hybrid contribution -0.205 -1.633 -0.612 1.756 sum -3.199 8.552 5.923 10.883 Atomic orbital electron populations 1.21655 0.93495 1.02691 1.02495 1.21711 0.97710 0.94600 1.03025 1.21273 0.77396 0.97988 1.01556 1.45214 1.07925 1.07055 1.79334 1.15938 0.81484 0.84437 0.77303 1.90818 1.68378 1.30925 1.59304 1.45517 1.04755 1.08897 1.80343 1.20294 0.86072 0.85053 0.99019 1.21923 1.02929 1.00516 0.94070 1.22167 1.03795 0.99296 0.95763 1.20331 0.90405 0.78546 0.78783 1.90683 1.57125 1.51175 1.44944 1.48561 1.09115 1.39076 1.37025 1.23216 0.94572 0.92957 0.93154 1.21488 0.90835 0.85555 0.96107 0.91619 1.42396 1.51018 1.05767 1.36387 1.19487 1.16108 0.94184 1.07026 0.90810 1.25303 1.02560 0.96253 1.01078 1.69769 1.48775 1.01894 1.40565 0.85394 0.79128 0.77360 0.79360 1.22016 1.22454 1.19836 1.22571 0.95785 0.95579 0.98221 0.90529 1.21562 0.96249 1.01878 0.98891 1.22384 0.81825 0.96044 1.00652 0.91676 0.92484 0.91509 0.91913 0.90577 0.91738 0.92756 0.75980 0.75776 0.90569 0.90731 0.92659 0.92274 0.89502 0.90735 0.91501 0.91940 0.78952 0.94076 0.90833 0.93327 0.91797 0.89911 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.13 -2.48 6.05 30.59 0.19 -2.30 16 3 C 0.14 3.19 5.67 86.38 0.49 3.68 16 4 N -0.74 -18.57 5.56 -478.53 -2.66 -21.23 16 5 C 0.71 20.64 7.99 179.05 1.43 22.07 16 6 O -0.61 -20.69 12.70 -3.98 -0.05 -20.75 16 7 N -0.73 -19.87 3.96 -441.47 -1.75 -21.62 16 8 C 0.19 5.13 0.67 2.86 0.00 5.13 16 9 C -0.14 -3.66 7.87 71.98 0.57 -3.09 16 10 C -0.15 -4.08 8.03 71.98 0.58 -3.50 16 11 C 0.53 15.88 6.63 87.66 0.58 16.46 16 12 O -0.56 -19.37 16.22 -3.02 -0.05 -19.42 16 13 N -0.61 -16.92 3.31 -811.80 -2.68 -19.61 16 14 C 0.09 2.60 5.31 86.73 0.46 3.06 16 15 C 0.17 5.59 3.07 46.28 0.14 5.73 16 16 H 0.07 2.20 8.01 -2.38 -0.02 2.18 16 17 N -0.72 -30.36 5.18 -316.87 -1.64 -32.00 16 18 C -0.24 -11.44 9.98 84.03 0.84 -10.60 16 19 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 20 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 21 N -0.96 -52.90 13.06 21.65 0.28 -52.61 16 22 Si 0.96 42.47 29.55 68.60 2.03 44.50 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C -0.10 -2.75 3.26 -9.30 -0.03 -2.78 16 27 H 0.08 2.22 8.01 -2.39 -0.02 2.20 16 28 C -0.13 -3.06 9.31 71.98 0.67 -2.39 16 29 C 0.11 2.86 6.39 86.86 0.56 3.41 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.41 9.39 8.49 -92.71 -0.79 8.60 16 38 H 0.40 10.68 5.73 -92.71 -0.53 10.15 16 39 H 0.08 1.97 7.95 -2.38 -0.02 1.95 16 40 H 0.07 2.10 6.60 -2.39 -0.02 2.09 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.63 6.32 -2.38 -0.02 1.61 16 43 H 0.09 2.54 6.13 -2.39 -0.01 2.52 16 44 H 0.07 1.80 8.12 -2.38 -0.02 1.78 16 45 H 0.07 2.11 5.41 -2.38 -0.01 2.09 16 46 H 0.06 1.91 6.39 -2.39 -0.02 1.90 16 47 H 0.38 17.46 7.72 -92.71 -0.72 16.75 16 48 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 49 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 52 H 0.08 1.89 8.03 -2.39 -0.02 1.87 16 53 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 Total: -1.00 -60.35 413.04 0.02 -60.34 By element: Atomic # 1 Polarization: 52.73 SS G_CDS: -1.11 Total: 51.62 kcal Atomic # 6 Polarization: 23.13 SS G_CDS: 7.65 Total: 30.78 kcal Atomic # 7 Polarization: -138.62 SS G_CDS: -8.45 Total: -147.07 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.10 Total: -40.17 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -60.35 0.02 -60.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724952160.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.240 kcal (2) G-P(sol) polarization free energy of solvation -60.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds