Wall clock time and date at job start Sat Apr 11 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46535 * 2 1 4 4 C 1.53000 * 109.46837 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47263 * 304.99533 * 4 3 2 6 6 N 1.46499 * 109.47390 * 64.99563 * 4 3 2 7 7 C 1.34770 * 119.99953 * 275.00274 * 6 4 3 8 8 N 1.34780 * 120.00115 * 180.02562 * 7 6 4 9 9 O 1.21585 * 120.00190 * 359.97438 * 7 6 4 10 10 C 1.50702 * 109.47205 * 184.99998 * 4 3 2 11 11 O 1.21286 * 119.99683 * 240.00319 * 10 4 3 12 12 N 1.34777 * 120.00185 * 59.99309 * 10 4 3 13 13 C 1.46498 * 119.99956 * 180.02562 * 12 10 4 14 14 C 1.52996 * 109.47180 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.44797 * 65.05165 * 14 13 12 16 16 C 1.54864 * 109.45248 * 184.99687 * 14 13 12 17 17 C 1.47089 * 110.32626 * 191.30946 * 16 14 13 18 18 C 1.52571 * 114.32511 * 297.20470 * 17 16 14 19 19 C 1.50881 * 109.36466 * 85.00804 * 18 17 16 20 20 C 1.53955 * 110.09475 * 268.11642 * 19 18 17 21 21 N 1.44575 * 109.45168 * 305.13608 * 14 13 12 22 22 C 1.36940 * 118.64152 * 329.22577 * 21 14 13 23 23 H 1.08005 * 120.00063 * 331.67848 * 22 21 14 24 24 C 1.38814 * 119.99980 * 151.66973 * 22 21 14 25 25 N 1.31622 * 119.99829 * 344.76308 * 24 22 21 26 26 Si 1.86798 * 120.00019 * 164.76274 * 24 22 21 27 27 H 1.48501 * 109.47196 * 59.99929 * 26 24 22 28 28 H 1.48497 * 109.47153 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46729 * 300.00055 * 26 24 22 30 30 H 1.08996 * 109.47320 * 299.99820 * 1 2 3 31 31 H 1.08995 * 109.46983 * 60.00581 * 1 2 3 32 32 H 1.09002 * 109.46507 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47320 * 240.00180 * 2 1 3 34 34 H 1.08995 * 109.46983 * 119.99419 * 2 1 3 35 35 H 1.08999 * 109.47440 * 59.99643 * 3 2 1 36 36 H 1.09003 * 109.47193 * 299.99683 * 3 2 1 37 37 H 0.97004 * 120.00065 * 94.99743 * 6 4 3 38 38 H 0.97004 * 119.99903 * 359.97438 * 8 7 6 39 39 H 0.96994 * 120.00417 * 180.02562 * 8 7 6 40 40 H 0.96995 * 119.99453 * 0.02562 * 12 10 4 41 41 H 1.08998 * 109.47076 * 300.00277 * 13 12 10 42 42 H 1.08997 * 109.47431 * 60.00143 * 13 12 10 43 43 H 1.09002 * 109.33037 * 311.57636 * 16 14 13 44 44 H 1.09001 * 109.32215 * 71.04695 * 16 14 13 45 45 H 1.09004 * 108.50975 * 58.44899 * 17 16 14 46 46 H 1.08993 * 108.51872 * 176.10350 * 17 16 14 47 47 H 1.09003 * 109.49114 * 204.97987 * 18 17 16 48 48 H 1.09007 * 109.48380 * 325.01688 * 18 17 16 49 49 H 1.08998 * 109.36418 * 28.30289 * 19 18 17 50 50 H 1.08997 * 109.36732 * 148.04867 * 19 18 17 51 51 H 1.08996 * 108.94428 * 161.24845 * 20 19 18 52 52 H 1.08998 * 108.94530 * 279.96279 * 20 19 18 53 53 H 0.97000 * 119.99814 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8532 0.8409 6 7 4.0578 0.8590 -1.2527 7 6 4.1865 -0.4775 -1.3680 8 7 4.6359 -1.0145 -2.5196 9 8 3.8982 -1.1990 -0.4327 10 6 4.0722 2.8581 0.1232 11 8 4.7691 3.3326 -0.7487 12 7 3.7470 3.5966 1.2027 13 6 4.2349 4.9727 1.3227 14 6 3.7259 5.5820 2.6306 15 1 4.1626 5.0472 3.4742 16 6 4.1354 7.0740 2.6982 17 6 3.8983 7.6082 4.0480 18 6 2.4350 7.5982 4.4798 19 6 2.0928 6.2465 5.0562 20 6 1.5437 5.3243 3.9524 21 7 2.2855 5.4714 2.6848 22 6 1.5800 5.5045 1.5116 23 1 1.9722 6.0415 0.6606 24 6 0.3608 4.8476 1.4160 25 7 0.0203 3.9569 2.3233 26 14 -0.7964 5.2276 -0.0003 27 1 -0.1215 4.9205 -1.2870 28 1 -2.0223 4.3993 0.1263 29 1 -1.1653 6.6656 0.0343 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 1.6765 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 4.2882 1.4346 -1.9987 38 1 4.8663 -0.4389 -3.2657 39 1 4.7282 -1.9764 -2.6028 40 1 3.1899 3.2169 1.9000 41 1 5.3249 4.9731 1.3221 42 1 3.8709 5.5620 0.4812 43 1 5.1932 7.1693 2.4531 44 1 3.5480 7.6422 1.9769 45 1 4.4733 7.0165 4.7603 46 1 4.2598 8.6359 4.0820 47 1 2.2734 8.3672 5.2352 48 1 1.7998 7.7973 3.6166 49 1 2.9887 5.8001 5.4876 50 1 1.3381 6.3656 5.8337 51 1 1.6165 4.2896 4.2871 52 1 0.4954 5.5666 3.7779 53 1 -0.8315 3.4977 2.2563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725243210.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:35 Heat of formation + Delta-G solvation = -83.150218 kcal Electronic energy + Delta-G solvation = -32741.318093 eV Core-core repulsion = 28647.042922 eV Total energy + Delta-G solvation = -4094.275172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.55081 -40.38385 -39.49202 -36.75954 -36.03209 -35.18826 -34.92661 -33.80045 -33.24816 -32.41272 -30.26034 -28.42322 -27.22157 -25.64514 -25.13179 -23.56149 -22.28423 -21.97309 -21.39515 -20.89218 -20.74841 -19.51914 -18.70030 -17.93449 -17.29608 -17.24917 -16.95807 -16.68104 -16.13974 -15.93141 -15.84242 -15.63896 -15.24487 -15.16465 -15.08281 -14.65284 -14.46665 -14.25275 -14.10554 -13.69832 -13.44019 -13.36521 -13.10046 -12.85206 -12.78689 -12.70801 -12.67732 -12.47011 -12.36771 -12.04479 -11.96956 -11.56890 -11.49838 -11.36663 -11.32357 -11.27556 -11.15927 -11.01237 -10.74598 -10.57844 -10.27975 -10.01905 -9.78484 -8.47303 -7.71835 -5.14709 1.43790 1.49868 1.51481 1.60935 1.78244 2.18493 2.53694 2.59351 3.43020 3.58452 3.65389 3.74979 3.96816 4.01427 4.07929 4.12404 4.26458 4.31065 4.34333 4.46771 4.54857 4.65286 4.68150 4.71253 4.74769 4.85339 4.98007 5.00236 5.04599 5.12192 5.17326 5.20905 5.27307 5.29669 5.30684 5.41802 5.44677 5.46163 5.52307 5.58669 5.65741 5.73419 5.79321 5.85610 5.89125 5.95898 6.07779 6.54364 6.69595 7.06872 7.29128 7.34356 7.67626 8.07218 8.46953 9.30954 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.004208 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.810419 B = 6652.377343 C = 7818.414175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.116 4.116 4 C 0.160 3.840 5 H 0.107 0.893 6 N -0.721 5.721 7 C 0.704 3.296 8 N -0.847 5.847 9 O -0.626 6.626 10 C 0.508 3.492 11 O -0.583 6.583 12 N -0.681 5.681 13 C 0.134 3.866 14 C 0.173 3.827 15 H 0.056 0.944 16 C -0.128 4.128 17 C -0.100 4.100 18 C -0.103 4.103 19 C -0.133 4.133 20 C 0.191 3.809 21 N -0.586 5.586 22 C -0.234 4.234 23 H 0.047 0.953 24 C -0.012 4.012 25 N -0.907 5.907 26 Si 0.918 3.082 27 H -0.290 1.290 28 H -0.298 1.298 29 H -0.292 1.292 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.409 0.591 38 H 0.412 0.588 39 H 0.423 0.577 40 H 0.410 0.590 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.042 0.958 49 H 0.058 0.942 50 H 0.058 0.942 51 H 0.004 0.996 52 H 0.038 0.962 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 -3.175 -2.488 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.155 4.155 4 C 0.050 3.950 5 H 0.125 0.875 6 N -0.378 5.378 7 C 0.402 3.598 8 N -0.416 5.416 9 O -0.507 6.507 10 C 0.294 3.706 11 O -0.465 6.465 12 N -0.329 5.329 13 C 0.009 3.991 14 C 0.065 3.935 15 H 0.074 0.926 16 C -0.168 4.168 17 C -0.138 4.138 18 C -0.140 4.140 19 C -0.172 4.172 20 C 0.066 3.934 21 N -0.309 5.309 22 C -0.365 4.365 23 H 0.064 0.936 24 C -0.209 4.209 25 N -0.553 5.553 26 Si 0.750 3.250 27 H -0.217 1.217 28 H -0.224 1.224 29 H -0.220 1.220 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.246 0.754 38 H 0.242 0.758 39 H 0.256 0.744 40 H 0.246 0.754 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.077 0.923 51 H 0.022 0.978 52 H 0.056 0.944 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.440 -3.390 -2.172 9.351 hybrid contribution -1.285 0.308 -1.373 1.905 sum 7.155 -3.082 -3.545 8.559 Atomic orbital electron populations 1.21746 0.96009 1.01532 1.01217 1.21360 0.95111 0.94759 1.02114 1.21894 0.92319 0.98407 1.02870 1.20450 0.94889 0.90873 0.88770 0.87520 1.44684 1.70930 1.05642 1.16583 1.15999 0.77951 0.81856 0.83995 1.42730 1.72252 1.12348 1.14309 1.90953 1.58652 1.60772 1.40315 1.20624 0.80027 0.88064 0.81912 1.90594 1.40851 1.73873 1.41198 1.45656 1.51047 1.13873 1.22335 1.21486 0.96990 0.81698 0.98910 1.20668 0.84491 0.94126 0.94225 0.92643 1.21279 1.00483 0.97311 0.97758 1.20269 0.96025 1.00696 0.96775 1.20902 0.96947 0.96536 0.99664 1.21947 1.00595 0.96535 0.98144 1.20766 0.94578 0.94332 0.83755 1.43731 1.00012 1.84922 1.02195 1.18855 1.01654 1.24446 0.91559 0.93563 1.25094 1.00537 0.97100 0.98183 1.70075 1.22337 1.26405 1.36446 0.86139 0.80078 0.77006 0.81805 1.21705 1.22411 1.21967 0.93561 0.93611 0.91750 0.92238 0.92414 0.90395 0.93067 0.75398 0.75813 0.74376 0.75357 0.91465 0.93622 0.90952 0.93905 0.92105 0.92145 0.92103 0.93889 0.92287 0.92322 0.97783 0.94352 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.91 71.98 0.71 -3.93 16 2 C -0.10 -3.14 4.54 30.60 0.14 -3.01 16 3 C -0.12 -4.04 4.83 30.59 0.15 -3.90 16 4 C 0.16 5.23 2.67 44.25 0.12 5.35 16 5 H 0.11 3.55 7.58 -2.39 -0.02 3.54 16 6 N -0.72 -20.25 4.91 -461.42 -2.26 -22.52 16 7 C 0.70 19.08 7.40 179.06 1.33 20.40 16 8 N -0.85 -14.18 8.88 -184.75 -1.64 -15.82 16 9 O -0.63 -21.47 14.32 -3.98 -0.06 -21.52 16 10 C 0.51 18.45 7.22 87.66 0.63 19.08 16 11 O -0.58 -23.10 15.84 -3.05 -0.05 -23.15 16 12 N -0.68 -24.88 4.58 -463.07 -2.12 -27.00 16 13 C 0.13 4.74 4.52 86.38 0.39 5.13 16 14 C 0.17 5.92 2.19 45.99 0.10 6.02 16 15 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 16 C -0.13 -3.83 5.06 29.39 0.15 -3.68 16 17 C -0.10 -2.70 5.15 28.61 0.15 -2.56 16 18 C -0.10 -3.14 5.50 29.76 0.16 -2.98 16 19 C -0.13 -4.33 5.71 30.23 0.17 -4.16 16 20 C 0.19 7.88 4.66 86.49 0.40 8.29 16 21 N -0.59 -24.02 1.77 -674.25 -1.19 -25.21 16 22 C -0.23 -11.03 7.61 84.03 0.64 -10.39 16 23 H 0.05 2.32 6.75 -2.91 -0.02 2.30 16 24 C -0.01 -0.58 4.87 84.86 0.41 -0.17 16 25 N -0.91 -45.87 11.12 21.65 0.24 -45.63 16 26 Si 0.92 42.78 29.58 68.60 2.03 44.81 16 27 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 29 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.94 5.64 -2.39 -0.01 1.93 16 34 H 0.06 1.99 7.84 -2.39 -0.02 1.97 16 35 H 0.08 3.12 7.43 -2.39 -0.02 3.10 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.41 10.64 7.80 -92.71 -0.72 9.91 16 38 H 0.41 4.58 8.84 -92.71 -0.82 3.76 16 39 H 0.42 5.73 8.93 -92.71 -0.83 4.91 16 40 H 0.41 15.81 7.43 -92.71 -0.69 15.12 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 1.84 6.85 -2.39 -0.02 1.82 16 43 H 0.07 1.84 8.11 -2.39 -0.02 1.82 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.51 7.36 -2.39 -0.02 1.49 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.04 1.59 7.48 -2.38 -0.02 1.57 16 49 H 0.06 1.76 7.32 -2.39 -0.02 1.74 16 50 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.00 0.18 8.01 -2.39 -0.02 0.17 16 52 H 0.04 1.84 6.46 -2.39 -0.02 1.83 16 53 H 0.25 12.63 8.31 -92.71 -0.77 11.86 16 Total: -1.00 -58.98 403.66 -1.51 -60.49 By element: Atomic # 1 Polarization: 48.16 SS G_CDS: -2.12 Total: 46.04 kcal Atomic # 6 Polarization: 23.86 SS G_CDS: 5.66 Total: 29.51 kcal Atomic # 7 Polarization: -129.20 SS G_CDS: -6.98 Total: -136.18 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.11 Total: -44.67 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -58.98 -1.51 -60.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725243210.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.660 kcal (2) G-P(sol) polarization free energy of solvation -58.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds