Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46767 * 2 1 4 4 C 1.53000 * 109.47259 * 239.99501 * 2 1 3 5 5 C 1.52995 * 109.46820 * 119.99420 * 2 1 3 6 6 H 1.09004 * 109.47165 * 179.36834 * 5 2 1 7 7 N 1.46496 * 109.47735 * 299.37111 * 5 2 1 8 8 C 1.34774 * 120.00199 * 275.00563 * 7 5 2 9 9 N 1.34779 * 119.99980 * 179.97438 * 8 7 5 10 10 O 1.21587 * 120.00110 * 359.97438 * 8 7 5 11 11 C 1.50707 * 109.47032 * 59.37551 * 5 2 1 12 12 O 1.21287 * 119.99578 * 268.65635 * 11 5 2 13 13 N 1.34773 * 120.00417 * 88.65714 * 11 5 2 14 14 C 1.46495 * 120.00274 * 185.17423 * 13 11 5 15 15 H 1.09001 * 110.64056 * 35.82586 * 14 13 11 16 16 C 1.54320 * 110.72503 * 272.68331 * 14 13 11 17 17 N 1.47027 * 107.27178 * 263.83045 * 16 14 13 18 18 C 1.36936 * 125.64990 * 181.07679 * 17 16 14 19 19 H 1.08000 * 120.00163 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99783 * 359.97438 * 18 17 16 21 21 N 1.31623 * 120.00372 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99803 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47330 * 60.00137 * 22 20 18 24 24 H 1.48500 * 109.47194 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46995 * 299.99858 * 22 20 18 26 26 C 1.47427 * 108.70050 * 1.05433 * 17 16 14 27 27 C 1.54901 * 104.93040 * 335.82201 * 26 17 16 28 28 C 1.52999 * 111.00499 * 155.13816 * 27 26 17 29 29 C 1.53010 * 111.00287 * 278.98700 * 27 26 17 30 30 H 1.08990 * 109.47774 * 300.00280 * 1 2 3 31 31 H 1.09002 * 109.46824 * 60.00804 * 1 2 3 32 32 H 1.09008 * 109.47084 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46899 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47027 * 299.99714 * 3 2 1 35 35 H 1.09003 * 109.47581 * 59.99892 * 3 2 1 36 36 H 1.08998 * 109.47297 * 306.21238 * 4 2 1 37 37 H 1.09001 * 109.46859 * 66.21389 * 4 2 1 38 38 H 1.08999 * 109.47014 * 186.20202 * 4 2 1 39 39 H 0.97002 * 119.99599 * 94.99618 * 7 5 2 40 40 H 0.96994 * 120.00120 * 359.97438 * 9 8 7 41 41 H 0.97002 * 119.99488 * 180.02562 * 9 8 7 42 42 H 0.97006 * 119.99434 * 5.17956 * 13 11 5 43 43 H 1.08995 * 109.88532 * 144.41127 * 16 14 13 44 44 H 1.09007 * 110.00758 * 23.31476 * 16 14 13 45 45 H 0.96992 * 120.00397 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.36212 * 94.71566 * 26 17 16 47 47 H 1.08995 * 110.36795 * 216.92050 * 26 17 16 48 48 H 1.09003 * 109.46977 * 65.91275 * 28 27 26 49 49 H 1.09004 * 109.47223 * 185.90804 * 28 27 26 50 50 H 1.08997 * 109.47559 * 305.91111 * 28 27 26 51 51 H 1.09009 * 109.46651 * 58.54792 * 29 27 26 52 52 H 1.08999 * 109.47235 * 178.54655 * 29 27 26 53 53 H 1.08997 * 109.46976 * 298.54781 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 2.0399 -0.7211 1.2493 6 1 3.1299 -0.7310 1.2437 7 7 1.5641 -0.0218 2.4454 8 6 2.2528 1.0307 2.9294 9 7 1.8146 1.6744 4.0295 10 8 3.2693 1.3996 2.3737 11 6 1.5249 -2.1374 1.2572 12 8 0.4774 -2.3987 1.8099 13 7 2.2283 -3.1137 0.6501 14 6 1.6748 -4.4670 0.5589 15 1 0.5950 -4.4316 0.4143 16 6 2.0307 -5.2884 1.8159 17 7 3.2297 -6.0773 1.4968 18 6 3.8550 -6.9557 2.3409 19 1 4.7337 -7.4897 2.0103 20 6 3.3596 -7.1599 3.6214 21 7 2.2890 -6.5088 4.0245 22 14 4.2122 -8.3587 4.7726 23 1 5.6130 -7.9195 4.9958 24 1 3.4926 -8.3950 6.0711 25 1 4.2091 -9.7143 4.1664 26 6 3.6469 -5.7663 0.1174 27 6 2.3605 -5.2653 -0.5852 28 6 2.7002 -4.3541 -1.7664 29 6 1.4881 -6.4394 -1.0343 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.5888 -1.7119 -1.3065 37 1 1.7704 -0.1474 -2.1357 38 1 3.1244 -0.8185 -1.1953 39 1 0.7532 -0.3162 2.8889 40 1 1.0035 1.3804 4.4727 41 1 2.3102 2.4321 4.3776 42 1 3.1011 -2.9202 0.2736 43 1 1.2057 -5.9541 2.0696 44 1 2.2383 -4.6202 2.6517 45 1 1.9431 -6.6512 4.9194 46 1 4.4074 -4.9855 0.1181 47 1 4.0243 -6.6620 -0.3758 48 1 3.2102 -4.9326 -2.5366 49 1 1.7821 -3.9332 -2.1764 50 1 3.3502 -3.5473 -1.4278 51 1 1.2246 -7.0479 -0.1692 52 1 0.5796 -6.0592 -1.5014 53 1 2.0387 -7.0473 -1.7521 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725293409.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = -75.314415 kcal Electronic energy + Delta-G solvation = -32918.167903 eV Core-core repulsion = 28824.232517 eV Total energy + Delta-G solvation = -4093.935386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03938 -40.76286 -39.53132 -37.68886 -35.72608 -35.02427 -34.46173 -33.86590 -32.59386 -30.20159 -28.51578 -28.13273 -28.00571 -27.64219 -27.19695 -25.05341 -22.57206 -22.22849 -21.54981 -20.41165 -19.85237 -19.50125 -18.68813 -18.49379 -17.44392 -17.19043 -17.10779 -16.64538 -16.06252 -15.81851 -15.57244 -15.43246 -15.32988 -15.08520 -14.80215 -14.58100 -14.33555 -13.98651 -13.77747 -13.64375 -13.41283 -13.13978 -13.02634 -12.95973 -12.86555 -12.81262 -12.65003 -12.55383 -12.48952 -12.28052 -12.15826 -11.88016 -11.82412 -11.73485 -11.65570 -11.48898 -11.35382 -11.26761 -10.87736 -10.70785 -10.61015 -10.02289 -9.93107 -8.87305 -7.82923 -5.18949 1.43173 1.45146 1.46587 1.52671 1.80776 2.15565 2.36280 2.49401 3.34947 3.48311 3.53699 3.64720 3.73787 3.77072 3.88717 3.99679 4.10349 4.13637 4.34567 4.42449 4.53115 4.57238 4.71641 4.81261 4.82844 4.88941 4.90618 4.94992 4.99439 5.05206 5.05996 5.07362 5.16459 5.18111 5.20156 5.26594 5.33686 5.35525 5.38905 5.46760 5.48468 5.52996 5.60713 5.72831 5.78044 5.83475 6.05118 6.19357 6.53846 7.00396 7.09622 7.21500 7.63786 7.79665 8.43382 9.25807 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011653 B = 0.003935 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.301947 B = 7113.043460 C = 8684.657291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.118 4.118 4 C -0.149 4.149 5 C 0.163 3.837 6 H 0.096 0.904 7 N -0.725 5.725 8 C 0.705 3.295 9 N -0.850 5.850 10 O -0.624 6.624 11 C 0.516 3.484 12 O -0.566 6.566 13 N -0.693 5.693 14 C 0.142 3.858 15 H 0.082 0.918 16 C 0.195 3.805 17 N -0.621 5.621 18 C -0.238 4.238 19 H 0.085 0.915 20 C -0.067 4.067 21 N -0.952 5.952 22 Si 0.975 3.025 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.275 1.275 26 C 0.136 3.864 27 C -0.073 4.073 28 C -0.125 4.125 29 C -0.123 4.123 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.408 0.592 40 H 0.411 0.589 41 H 0.423 0.577 42 H 0.407 0.593 43 H 0.004 0.996 44 H -0.001 1.001 45 H 0.243 0.757 46 H 0.028 0.972 47 H 0.046 0.954 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.027 0.973 52 H 0.071 0.929 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 15.746 -12.051 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 C -0.175 4.175 4 C -0.207 4.207 5 C 0.053 3.947 6 H 0.114 0.886 7 N -0.382 5.382 8 C 0.403 3.597 9 N -0.419 5.419 10 O -0.505 6.505 11 C 0.302 3.698 12 O -0.445 6.445 13 N -0.345 5.345 14 C 0.036 3.964 15 H 0.100 0.900 16 C 0.068 3.932 17 N -0.347 5.347 18 C -0.367 4.367 19 H 0.102 0.898 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.803 3.197 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.200 1.200 26 C 0.011 3.989 27 C -0.074 4.074 28 C -0.183 4.183 29 C -0.180 4.180 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.244 0.756 40 H 0.241 0.759 41 H 0.256 0.744 42 H 0.245 0.755 43 H 0.023 0.977 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.046 0.954 52 H 0.090 0.910 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.133 15.649 -12.031 19.986 hybrid contribution 0.096 -0.850 2.075 2.245 sum -3.037 14.798 -9.956 18.092 Atomic orbital electron populations 1.21821 0.93666 1.01594 1.02229 1.20839 0.96546 0.96348 0.92873 1.21751 1.00913 0.93684 1.01148 1.22033 1.01767 1.00640 0.96273 1.20716 0.99979 0.87372 0.86661 0.88572 1.44746 1.30211 1.32722 1.30519 1.15964 0.82603 0.79936 0.81150 1.42786 1.32392 1.37166 1.29553 1.90940 1.27283 1.69697 1.62596 1.20756 0.84358 0.87301 0.77402 1.90685 1.25262 1.84018 1.44516 1.45868 1.21796 1.08606 1.58223 1.22125 0.97537 0.80973 0.95783 0.89959 1.21073 0.88246 0.91269 0.92579 1.44681 1.30360 1.48267 1.11393 1.19428 1.07824 1.15792 0.93683 0.89761 1.25629 0.98908 1.02205 0.99276 1.70220 1.25478 1.46241 1.18159 0.85205 0.77576 0.79072 0.77821 1.20415 1.22519 1.20042 1.21906 0.94796 0.97807 0.84350 1.22023 0.95258 0.95981 0.94155 1.21700 1.02340 0.98489 0.95738 1.21582 0.99473 0.96622 1.00343 0.92994 0.90913 0.93704 0.92914 0.91574 0.93942 0.92092 0.90158 0.91466 0.75556 0.75921 0.74392 0.75501 0.97736 0.98293 0.94796 0.95462 0.93554 0.90499 0.90981 0.91884 0.95354 0.91032 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 7.96 71.98 0.57 -2.25 16 2 C -0.06 -1.34 0.62 -52.18 -0.03 -1.37 16 3 C -0.12 -2.48 6.99 71.98 0.50 -1.97 16 4 C -0.15 -2.54 7.85 71.98 0.57 -1.97 16 5 C 0.16 4.28 1.93 44.25 0.09 4.37 16 6 H 0.10 2.71 7.58 -2.38 -0.02 2.69 16 7 N -0.72 -18.38 4.20 -461.41 -1.94 -20.32 16 8 C 0.71 17.82 7.17 179.05 1.28 19.10 16 9 N -0.85 -13.98 8.88 -184.75 -1.64 -15.62 16 10 O -0.62 -19.71 14.30 -3.99 -0.06 -19.77 16 11 C 0.52 16.45 5.32 87.66 0.47 16.92 16 12 O -0.57 -21.88 14.95 -3.05 -0.05 -21.93 16 13 N -0.69 -21.41 3.56 -436.44 -1.55 -22.96 16 14 C 0.14 5.15 2.49 46.28 0.12 5.27 16 15 H 0.08 3.10 7.66 -2.39 -0.02 3.08 16 16 C 0.19 9.85 4.73 86.73 0.41 10.26 16 17 N -0.62 -31.31 3.38 -692.00 -2.34 -33.65 16 18 C -0.24 -13.37 10.28 84.03 0.86 -12.51 16 19 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 20 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 21 N -0.95 -59.52 10.31 21.65 0.22 -59.30 16 22 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 26 C 0.14 5.12 6.13 86.85 0.53 5.65 16 27 C -0.07 -2.17 0.84 -50.69 -0.04 -2.21 16 28 C -0.13 -2.49 8.26 71.98 0.59 -1.89 16 29 C -0.12 -3.56 8.62 71.99 0.62 -2.94 16 30 H 0.05 1.10 7.62 -2.39 -0.02 1.08 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.11 6.68 -2.38 -0.02 1.09 16 33 H 0.05 1.26 7.49 -2.38 -0.02 1.24 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.04 1.00 5.79 -2.39 -0.01 0.98 16 36 H 0.06 1.10 6.89 -2.39 -0.02 1.08 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.41 10.10 7.84 -92.71 -0.73 9.37 16 40 H 0.41 4.74 8.84 -92.71 -0.82 3.92 16 41 H 0.42 5.67 8.93 -92.71 -0.83 4.85 16 42 H 0.41 10.83 6.87 -92.70 -0.64 10.19 16 43 H 0.00 0.27 7.38 -2.39 -0.02 0.25 16 44 H 0.00 -0.07 7.40 -2.38 -0.02 -0.09 16 45 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.03 0.98 8.01 -2.39 -0.02 0.96 16 47 H 0.05 1.70 8.05 -2.39 -0.02 1.68 16 48 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 50 H 0.06 1.14 6.36 -2.39 -0.02 1.12 16 51 H 0.03 1.04 7.82 -2.38 -0.02 1.02 16 52 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 53 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -77.59 403.59 -0.39 -77.97 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -2.07 Total: 35.73 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 7.00 Total: 30.99 kcal Atomic # 7 Polarization: -144.60 SS G_CDS: -7.25 Total: -151.85 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.10 Total: -41.69 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -77.59 -0.39 -77.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725293409.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.660 kcal (2) G-P(sol) polarization free energy of solvation -77.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds