Wall clock time and date at job start Sat Apr 11 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46841 * 2 1 4 4 C 1.52998 * 109.47320 * 240.00050 * 2 1 3 5 5 C 1.52999 * 109.46978 * 120.00140 * 2 1 3 6 6 H 1.08997 * 109.47258 * 175.62822 * 5 2 1 7 7 N 1.46497 * 109.47199 * 55.62385 * 5 2 1 8 8 C 1.34784 * 119.99612 * 85.00097 * 7 5 2 9 9 N 1.34774 * 119.99623 * 179.72012 * 8 7 5 10 10 O 1.21588 * 119.99821 * 0.02562 * 8 7 5 11 11 C 1.50703 * 109.47094 * 295.62749 * 5 2 1 12 12 O 1.21277 * 120.00244 * 91.87026 * 11 5 2 13 13 N 1.34783 * 119.99885 * 271.87426 * 11 5 2 14 14 C 1.46502 * 119.99973 * 174.89243 * 13 11 5 15 15 H 1.09005 * 110.63926 * 323.38652 * 14 13 11 16 16 C 1.54324 * 110.72113 * 86.52980 * 14 13 11 17 17 N 1.47018 * 107.26988 * 96.17208 * 16 14 13 18 18 C 1.36936 * 125.64949 * 178.90692 * 17 16 14 19 19 H 1.07999 * 120.00217 * 180.02562 * 18 17 16 20 20 C 1.38817 * 119.99850 * 0.02562 * 18 17 16 21 21 N 1.31616 * 119.99710 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99984 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47272 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47174 * 119.99922 * 22 20 18 25 25 H 1.48501 * 109.47059 * 239.99788 * 22 20 18 26 26 C 1.47422 * 108.70615 * 358.93614 * 17 16 14 27 27 C 1.54916 * 104.83183 * 24.13091 * 26 17 16 28 28 C 1.52998 * 111.00609 * 204.91428 * 27 26 17 29 29 C 1.52998 * 111.00114 * 81.05984 * 27 26 17 30 30 H 1.08995 * 109.47318 * 299.99958 * 1 2 3 31 31 H 1.09001 * 109.47061 * 60.00017 * 1 2 3 32 32 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47137 * 180.47689 * 3 2 1 34 34 H 1.08998 * 109.47359 * 300.48208 * 3 2 1 35 35 H 1.09004 * 109.46973 * 60.48488 * 3 2 1 36 36 H 1.09000 * 109.47224 * 300.00136 * 4 2 1 37 37 H 1.09001 * 109.47108 * 59.99962 * 4 2 1 38 38 H 1.08998 * 109.47452 * 179.97438 * 4 2 1 39 39 H 0.97002 * 120.00157 * 264.99825 * 7 5 2 40 40 H 0.97001 * 119.99929 * 180.27235 * 9 8 7 41 41 H 0.96997 * 120.00457 * 0.28518 * 9 8 7 42 42 H 0.97002 * 119.99846 * 354.88621 * 13 11 5 43 43 H 1.08999 * 109.88062 * 215.58518 * 16 14 13 44 44 H 1.09001 * 109.87853 * 336.75351 * 16 14 13 45 45 H 0.97005 * 119.99963 * 180.02562 * 21 20 18 46 46 H 1.08999 * 110.37005 * 142.96753 * 26 17 16 47 47 H 1.08998 * 110.37247 * 265.29446 * 26 17 16 48 48 H 1.08999 * 109.47075 * 174.71602 * 28 27 26 49 49 H 1.08997 * 109.47255 * 294.71438 * 28 27 26 50 50 H 1.08995 * 109.46780 * 54.71856 * 28 27 26 51 51 H 1.08994 * 109.47501 * 307.80608 * 29 27 26 52 52 H 1.08998 * 109.47116 * 67.80965 * 29 27 26 53 53 H 1.09001 * 109.46869 * 187.80386 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1271 -0.7896 1.2110 7 7 1.4675 -2.0687 1.3031 8 6 2.0591 -3.0793 0.6357 9 7 1.5356 -4.3201 0.6898 10 8 3.0680 -2.8727 -0.0106 11 6 1.6280 0.0489 2.4773 12 8 0.5854 -0.2154 3.0375 13 7 2.4183 1.0316 2.9531 14 6 1.9672 1.8544 4.0782 15 1 0.8949 2.0390 4.0135 16 6 2.3261 1.1858 5.4220 17 7 3.5908 1.7787 5.8805 18 6 4.2400 1.4714 7.0464 19 1 5.1679 1.9653 7.2941 20 6 3.7052 0.5251 7.9098 21 7 2.5741 -0.0763 7.6081 22 14 4.5903 0.1064 9.5006 23 1 5.8310 0.9159 9.6047 24 1 3.7044 0.4070 10.6539 25 1 4.9395 -1.3369 9.5077 26 6 4.0442 2.7594 4.8775 27 6 2.7558 3.1895 4.1327 28 6 3.0786 3.6937 2.7247 29 6 1.9890 4.2471 4.9292 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 -0.0086 34 1 1.6696 1.9588 -0.8856 35 1 1.6837 1.9538 0.8943 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 0.6628 -2.2335 1.8190 40 1 1.9635 -5.0482 0.2127 41 1 0.7308 -4.4849 1.2056 42 1 3.2859 1.1939 2.5506 43 1 1.5404 1.3775 6.1528 44 1 2.4497 0.1121 5.2805 45 1 2.2002 -0.7373 8.2116 46 1 4.5038 3.6180 5.3671 47 1 4.7464 2.2963 4.1843 48 1 2.1508 3.9004 2.1912 49 1 3.6698 4.6069 2.7925 50 1 3.6449 2.9331 2.1874 51 1 1.8322 3.8920 5.9477 52 1 2.5641 5.1727 4.9517 53 1 1.0245 4.4300 4.4557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725293411.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:53 Heat of formation + Delta-G solvation = -74.241427 kcal Electronic energy + Delta-G solvation = -32927.868562 eV Core-core repulsion = 28833.979705 eV Total energy + Delta-G solvation = -4093.888857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04701 -40.77089 -39.53788 -37.69613 -35.74126 -35.02850 -34.46284 -33.85878 -32.59744 -30.20951 -28.50498 -28.13179 -27.99502 -27.65425 -27.19871 -25.05709 -22.57833 -22.23151 -21.55006 -20.41479 -19.84389 -19.49883 -18.69061 -18.49282 -17.44777 -17.18923 -17.11714 -16.65311 -16.06029 -15.82456 -15.58459 -15.43708 -15.33947 -15.10253 -14.78983 -14.54190 -14.33211 -13.98208 -13.80100 -13.64631 -13.41213 -13.16103 -13.04261 -12.95128 -12.86004 -12.81278 -12.70926 -12.56267 -12.49983 -12.25930 -12.06430 -11.87366 -11.83172 -11.73245 -11.65194 -11.47914 -11.36681 -11.27268 -10.88261 -10.72615 -10.60302 -10.01418 -9.92819 -8.87641 -7.83560 -5.19442 1.43175 1.43834 1.45489 1.54278 1.80349 2.16045 2.35793 2.48811 3.34754 3.48402 3.54118 3.64908 3.73969 3.76972 3.88933 3.99330 4.10334 4.13819 4.34973 4.42696 4.53399 4.57439 4.71786 4.80919 4.83869 4.88905 4.90326 4.95255 4.98998 5.05565 5.06378 5.07865 5.16594 5.18247 5.20487 5.27016 5.33625 5.35450 5.39212 5.47068 5.48439 5.53729 5.61087 5.72676 5.77988 5.83481 6.05040 6.18979 6.53636 7.00396 7.09382 7.21384 7.63664 7.79251 8.42875 9.25573 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.003945 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.063563 B = 7095.994771 C = 8672.535214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C -0.151 4.151 4 C -0.119 4.119 5 C 0.163 3.837 6 H 0.096 0.904 7 N -0.725 5.725 8 C 0.705 3.295 9 N -0.850 5.850 10 O -0.624 6.624 11 C 0.516 3.484 12 O -0.566 6.566 13 N -0.694 5.694 14 C 0.141 3.859 15 H 0.082 0.918 16 C 0.195 3.805 17 N -0.621 5.621 18 C -0.235 4.235 19 H 0.085 0.915 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.297 1.297 26 C 0.136 3.864 27 C -0.073 4.073 28 C -0.125 4.125 29 C -0.123 4.123 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.408 0.592 40 H 0.423 0.577 41 H 0.411 0.589 42 H 0.408 0.592 43 H 0.005 0.995 44 H -0.001 1.001 45 H 0.242 0.758 46 H 0.047 0.953 47 H 0.028 0.972 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.062 0.938 51 H 0.028 0.972 52 H 0.076 0.924 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.757 2.349 -19.617 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 C -0.209 4.209 4 C -0.176 4.176 5 C 0.053 3.947 6 H 0.114 0.886 7 N -0.382 5.382 8 C 0.403 3.597 9 N -0.419 5.419 10 O -0.505 6.505 11 C 0.302 3.698 12 O -0.445 6.445 13 N -0.345 5.345 14 C 0.036 3.964 15 H 0.100 0.900 16 C 0.068 3.932 17 N -0.347 5.347 18 C -0.364 4.364 19 H 0.103 0.897 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.803 3.197 23 H -0.186 1.186 24 H -0.221 1.221 25 H -0.225 1.225 26 C 0.012 3.988 27 C -0.074 4.074 28 C -0.183 4.183 29 C -0.181 4.181 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.245 0.755 40 H 0.256 0.744 41 H 0.241 0.759 42 H 0.245 0.755 43 H 0.023 0.977 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.046 0.954 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.081 0.919 51 H 0.047 0.953 52 H 0.095 0.905 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.672 2.385 -19.527 20.012 hybrid contribution 0.046 -1.352 1.808 2.258 sum -3.626 1.033 -17.719 18.116 Atomic orbital electron populations 1.21807 0.93646 1.01891 1.01952 1.20842 0.96632 0.96273 0.92878 1.22073 1.01983 0.93493 1.03356 1.21755 1.00816 0.99381 0.95648 1.20710 0.99518 0.81955 0.92554 0.88563 1.44749 1.31856 1.07166 1.54395 1.15979 0.82592 0.81512 0.79625 1.42785 1.33431 1.08113 1.57556 1.90942 1.27387 1.83847 1.48277 1.20757 0.83953 0.80165 0.84938 1.90682 1.26193 1.66823 1.60778 1.45901 1.20998 1.33969 1.33679 1.22084 0.98275 0.90759 0.85325 0.89965 1.21070 0.87255 0.93934 0.90891 1.44698 1.23935 1.45747 1.20342 1.19503 1.03875 1.17589 0.95468 0.89707 1.25627 0.98420 0.99746 1.02308 1.70237 1.21420 1.30627 1.37846 0.85065 0.78021 0.77190 0.79431 1.18624 1.22096 1.22460 1.21908 0.94757 0.91602 0.90580 1.21971 0.94905 0.92877 0.97666 1.21708 1.02502 1.01638 0.92455 1.21585 1.00156 0.97615 0.98715 0.93685 0.90940 0.92909 0.91274 0.90200 0.92194 0.93709 0.91587 0.93034 0.75535 0.74395 0.75920 0.75462 0.97715 0.98329 0.94821 0.93512 0.95424 0.90956 0.90489 0.91894 0.95298 0.90461 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.02 71.98 0.58 -2.23 16 2 C -0.06 -1.34 0.62 -52.18 -0.03 -1.38 16 3 C -0.15 -2.59 7.87 71.98 0.57 -2.02 16 4 C -0.12 -2.50 7.06 71.98 0.51 -1.99 16 5 C 0.16 4.28 1.94 44.25 0.09 4.37 16 6 H 0.10 2.71 7.58 -2.39 -0.02 2.69 16 7 N -0.72 -18.38 4.05 -461.41 -1.87 -20.25 16 8 C 0.70 17.81 7.38 179.05 1.32 19.13 16 9 N -0.85 -13.99 8.88 -184.74 -1.64 -15.63 16 10 O -0.62 -19.68 14.31 -3.99 -0.06 -19.74 16 11 C 0.52 16.48 5.31 87.66 0.47 16.94 16 12 O -0.57 -21.96 15.05 -3.02 -0.05 -22.00 16 13 N -0.69 -21.38 3.32 -436.90 -1.45 -22.84 16 14 C 0.14 5.13 2.47 46.18 0.11 5.25 16 15 H 0.08 3.09 7.68 -2.38 -0.02 3.07 16 16 C 0.19 9.85 4.79 86.73 0.42 10.27 16 17 N -0.62 -31.28 3.38 -691.99 -2.34 -33.62 16 18 C -0.24 -13.19 10.28 84.03 0.86 -12.32 16 19 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16 20 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 21 N -0.95 -59.58 10.31 21.65 0.22 -59.36 16 22 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 26 C 0.14 5.11 6.14 86.86 0.53 5.64 16 27 C -0.07 -2.16 0.83 -50.79 -0.04 -2.20 16 28 C -0.13 -2.48 8.20 71.98 0.59 -1.89 16 29 C -0.12 -3.56 8.57 71.98 0.62 -2.94 16 30 H 0.04 1.10 6.83 -2.39 -0.02 1.09 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.10 7.49 -2.39 -0.02 1.08 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.13 6.25 -2.39 -0.01 1.11 16 36 H 0.04 1.07 5.66 -2.39 -0.01 1.06 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.20 7.81 -2.39 -0.02 1.19 16 39 H 0.41 10.12 7.84 -92.71 -0.73 9.39 16 40 H 0.42 5.68 8.93 -92.71 -0.83 4.85 16 41 H 0.41 4.75 8.84 -92.71 -0.82 3.93 16 42 H 0.41 10.78 6.77 -92.71 -0.63 10.16 16 43 H 0.00 0.28 7.38 -2.39 -0.02 0.26 16 44 H 0.00 -0.09 7.41 -2.39 -0.02 -0.11 16 45 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 46 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 47 H 0.03 0.99 8.02 -2.39 -0.02 0.98 16 48 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 49 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 50 H 0.06 1.13 6.31 -2.39 -0.02 1.12 16 51 H 0.03 1.06 7.91 -2.39 -0.02 1.04 16 52 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 53 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -77.76 403.13 -0.16 -77.92 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -2.05 Total: 35.50 kcal Atomic # 6 Polarization: 24.06 SS G_CDS: 7.05 Total: 31.11 kcal Atomic # 7 Polarization: -144.62 SS G_CDS: -7.08 Total: -151.70 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.10 Total: -41.75 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -77.76 -0.16 -77.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725293411.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.677 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds