Wall clock time and date at job start Sat Apr 11 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.53903 * 2 1 4 4 C 1.53120 * 109.50607 * 239.90200 * 2 1 3 5 5 C 1.53120 * 109.15972 * 297.71781 * 4 2 1 6 6 H 1.08997 * 109.54087 * 62.30201 * 5 4 2 7 7 C 1.52999 * 109.50294 * 182.40242 * 5 4 2 8 8 C 1.53036 * 109.27700 * 302.34018 * 5 4 2 9 9 N 1.46850 * 109.52384 * 59.18090 * 8 5 4 10 10 C 1.46895 * 111.00333 * 174.16360 * 9 8 5 11 11 C 1.52995 * 109.47414 * 170.00269 * 10 9 8 12 12 C 1.53000 * 109.47420 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47327 * 179.97438 * 12 11 10 14 14 C 1.34779 * 120.00263 * 179.97438 * 13 12 11 15 15 O 1.21587 * 119.99419 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00192 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99903 * 180.02562 * 16 14 13 18 18 C 1.50697 * 109.47019 * 180.02562 * 17 16 14 19 19 O 1.21295 * 119.99784 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00066 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99805 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99987 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99382 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00404 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99516 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47456 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47002 * 120.00080 * 25 23 21 28 28 H 1.48497 * 109.47334 * 239.99738 * 25 23 21 29 29 C 1.46850 * 111.19713 * 298.26187 * 9 8 5 30 30 H 1.09004 * 109.46889 * 180.09846 * 1 2 3 31 31 H 1.08999 * 109.46947 * 300.09881 * 1 2 3 32 32 H 1.09000 * 109.47032 * 60.09890 * 1 2 3 33 33 H 1.08996 * 109.52935 * 177.80740 * 4 2 1 34 34 H 1.09005 * 109.52152 * 57.61362 * 4 2 1 35 35 H 1.08998 * 109.47019 * 179.79692 * 7 5 4 36 36 H 1.08993 * 109.47073 * 299.79998 * 7 5 4 37 37 H 1.09005 * 109.47043 * 59.79951 * 7 5 4 38 38 H 1.08995 * 109.46942 * 179.19622 * 8 5 4 39 39 H 1.08998 * 109.46530 * 299.16948 * 8 5 4 40 40 H 1.09001 * 109.46962 * 289.99973 * 10 9 8 41 41 H 1.09002 * 109.47442 * 49.99808 * 10 9 8 42 42 H 1.09001 * 109.46815 * 299.99794 * 11 10 9 43 43 H 1.08998 * 109.47456 * 59.99814 * 11 10 9 44 44 H 1.09001 * 109.47033 * 299.99752 * 12 11 10 45 45 H 1.09002 * 109.47364 * 59.99582 * 12 11 10 46 46 H 0.96999 * 120.00028 * 0.02562 * 13 12 11 47 47 H 0.96992 * 119.99717 * 0.02562 * 16 14 13 48 48 H 1.09001 * 109.47041 * 300.00444 * 17 16 14 49 49 H 1.08997 * 109.47014 * 60.00173 * 17 16 14 50 50 H 0.96997 * 119.99419 * 0.02562 * 20 18 17 51 51 H 0.97001 * 119.99991 * 180.02562 * 24 23 21 52 52 H 1.09007 * 109.46080 * 301.72331 * 29 9 8 53 53 H 1.09001 * 109.45527 * 181.75228 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0413 -0.7238 -1.2487 5 6 1.5750 -2.1818 -1.2108 6 1 0.4857 -2.2168 -1.2302 7 6 2.1317 -2.9279 -2.4250 8 6 2.0846 -2.8420 0.0723 9 7 1.5676 -2.1135 1.2379 10 6 1.9223 -2.7995 2.4874 11 6 1.5907 -1.8965 3.6770 12 6 1.9596 -2.6113 4.9785 13 7 1.6426 -1.7463 6.1176 14 6 1.8841 -2.1706 7.3738 15 8 2.3655 -3.2712 7.5616 16 7 1.5929 -1.3746 8.4217 17 6 1.8560 -1.8357 9.7871 18 6 1.4439 -0.7669 10.7664 19 8 0.9760 0.2770 10.3633 20 7 1.5943 -0.9715 12.0900 21 6 1.2198 0.0011 12.9808 22 1 0.8040 0.9309 12.6219 23 6 1.3754 -0.2097 14.3454 24 7 1.8818 -1.3410 14.7821 25 14 0.8645 1.1151 15.5592 26 1 0.3266 2.2843 14.8185 27 1 -0.1830 0.5791 16.4652 28 1 2.0432 1.5348 16.3590 29 6 2.0409 -0.7234 1.2480 30 1 -0.3633 -1.0277 0.0018 31 1 -0.3633 0.5154 0.8891 32 1 -0.3633 0.5123 -0.8909 33 1 3.1305 -0.6901 -1.2690 34 1 1.6442 -0.2375 -2.1398 35 1 1.8024 -3.9665 -2.3956 36 1 1.7684 -2.4573 -3.3385 37 1 3.2210 -2.8914 -2.4058 38 1 1.7424 -3.8762 0.1094 39 1 3.1743 -2.8196 0.0843 40 1 1.3553 -3.7271 2.5662 41 1 2.9889 -3.0246 2.4882 42 1 2.1577 -0.9689 3.5982 43 1 0.5242 -1.6715 3.6762 44 1 1.3922 -3.5386 5.0571 45 1 3.0261 -2.8366 4.9796 46 1 1.2582 -0.8684 5.9677 47 1 1.2092 -0.4965 8.2717 48 1 1.2856 -2.7443 9.9800 49 1 2.9198 -2.0434 9.9018 50 1 1.9681 -1.8065 12.4122 51 1 1.9900 -1.4882 15.7347 52 1 3.1309 -0.7110 1.2544 53 1 1.6668 -0.2190 2.1389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344296687.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:35 Heat of formation + Delta-G solvation = -107.736327 kcal Electronic energy + Delta-G solvation = -28896.653868 eV Core-core repulsion = 24801.312562 eV Total energy + Delta-G solvation = -4095.341305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21373 -40.59746 -40.00328 -37.18511 -36.22170 -35.34162 -35.25336 -34.00163 -33.36670 -31.97556 -29.21184 -27.75974 -27.45978 -26.92046 -26.03164 -23.79372 -22.93837 -22.02946 -21.36420 -21.30816 -20.09784 -19.65350 -19.41063 -17.69096 -17.38792 -17.09884 -16.82155 -16.47438 -16.43723 -16.09509 -15.88247 -15.71075 -15.40752 -15.19564 -15.09904 -15.08985 -14.79311 -14.18093 -13.94366 -13.80248 -13.71336 -13.54142 -13.34760 -13.19723 -12.96617 -12.90131 -12.65751 -12.45450 -12.43591 -12.27621 -12.20593 -12.10507 -11.83704 -11.78715 -11.57040 -11.45504 -11.33769 -11.04999 -10.94043 -10.54614 -10.42766 -10.09204 -9.80444 -9.20079 -8.50252 -6.00406 1.35891 1.43405 1.55876 1.62989 1.90564 2.12318 2.29433 2.89032 3.08130 3.17129 3.35935 3.77118 3.85101 3.92818 4.02271 4.05904 4.15066 4.22698 4.24274 4.36129 4.44653 4.46992 4.50556 4.55369 4.61578 4.66274 4.71979 4.74208 4.80975 4.84984 4.90947 4.92995 4.96130 5.09563 5.16850 5.18951 5.20470 5.26244 5.31949 5.33905 5.39850 5.42936 5.46509 5.49945 5.66367 5.92363 5.97110 6.16250 6.19416 6.49081 7.04106 7.04511 7.43755 7.54141 7.95456 8.66900 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.030725 B = 0.001404 C = 0.001354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.098396 B =19943.675584 C =20668.299816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.110 4.110 5 C -0.087 4.087 6 H 0.076 0.924 7 C -0.144 4.144 8 C 0.060 3.940 9 N -0.538 5.538 10 C 0.062 3.938 11 C -0.119 4.119 12 C 0.143 3.857 13 N -0.732 5.732 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.724 5.724 17 C 0.142 3.858 18 C 0.434 3.566 19 O -0.624 6.624 20 N -0.559 5.559 21 C -0.337 4.337 22 H 0.087 0.913 23 C -0.010 4.010 24 N -0.916 5.916 25 Si 0.997 3.003 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.271 1.271 29 C 0.051 3.949 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.411 0.589 47 H 0.410 0.590 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.399 0.601 51 H 0.280 0.720 52 H 0.027 0.973 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -1.581 -33.061 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.148 4.148 5 C -0.106 4.106 6 H 0.094 0.906 7 C -0.202 4.202 8 C -0.067 4.067 9 N -0.262 5.262 10 C -0.067 4.067 11 C -0.157 4.157 12 C 0.018 3.982 13 N -0.388 5.388 14 C 0.402 3.598 15 O -0.516 6.516 16 N -0.382 5.382 17 C 0.013 3.987 18 C 0.221 3.779 19 O -0.512 6.512 20 N -0.195 5.195 21 C -0.466 4.466 22 H 0.105 0.895 23 C -0.211 4.211 24 N -0.556 5.556 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.077 4.077 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.247 0.753 47 H 0.248 0.752 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.233 0.767 51 H 0.089 0.911 52 H 0.045 0.955 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.017 -1.962 -32.988 33.046 hybrid contribution 0.684 0.690 1.038 1.421 sum 0.666 -1.272 -31.950 31.982 Atomic orbital electron populations 1.21699 0.94451 1.02169 1.00873 1.21193 0.96844 0.98763 0.94139 0.90614 1.21676 1.00103 0.95198 0.97790 1.21163 1.00997 0.94753 0.93676 0.90581 1.21777 1.00860 1.00320 0.97255 1.22166 0.96754 0.97834 0.89981 1.61969 1.59993 1.02289 1.01951 1.21959 0.99034 0.97524 0.88150 1.21807 1.03413 0.99139 0.91366 1.21150 1.00306 0.93157 0.83539 1.44940 1.68817 1.21747 1.03336 1.15974 0.78896 0.83555 0.81328 1.90881 1.52805 1.22375 1.85518 1.44686 1.68494 1.21013 1.04011 1.20576 1.02306 0.95469 0.80341 1.20417 0.84477 0.89315 0.83713 1.90467 1.51962 1.30064 1.78666 1.41837 1.55053 1.18126 1.04460 1.19786 1.40932 0.98456 0.87468 0.89534 1.26119 0.96290 0.99682 0.98971 1.69688 1.44107 1.25208 1.16622 0.84810 0.78180 0.77588 0.77386 1.19400 1.19681 1.19674 1.22293 0.96895 0.89192 0.99297 0.92054 0.93311 0.93106 0.92563 0.91326 0.92305 0.91984 0.92878 0.90634 0.95373 0.90035 0.94682 0.90191 0.89772 0.92214 0.92563 0.75325 0.75181 0.89105 0.89110 0.76703 0.91092 0.95522 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.75 71.98 0.63 -0.91 16 2 C -0.09 -0.99 3.21 -10.74 -0.03 -1.02 16 3 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.11 -1.11 4.79 30.67 0.15 -0.96 16 5 C -0.09 -0.89 2.53 -10.74 -0.03 -0.91 16 6 H 0.08 0.88 6.59 -2.39 -0.02 0.87 16 7 C -0.14 -1.19 9.20 71.98 0.66 -0.52 16 8 C 0.06 0.71 4.71 86.32 0.41 1.12 16 9 N -0.54 -6.83 4.09 -896.37 -3.66 -10.50 16 10 C 0.06 0.78 5.27 86.30 0.46 1.24 16 11 C -0.12 -1.51 4.58 30.59 0.14 -1.37 16 12 C 0.14 2.68 5.67 86.38 0.49 3.18 16 13 N -0.73 -16.35 5.56 -478.53 -2.66 -19.01 16 14 C 0.70 22.40 8.57 179.05 1.53 23.93 16 15 O -0.63 -24.82 16.34 -3.99 -0.07 -24.88 16 16 N -0.72 -23.97 5.53 -482.30 -2.67 -26.63 16 17 C 0.14 5.26 6.15 85.63 0.53 5.78 16 18 C 0.43 20.04 7.85 87.66 0.69 20.73 16 19 O -0.62 -32.06 15.24 -3.08 -0.05 -32.11 16 20 N -0.56 -28.12 5.29 -306.98 -1.62 -29.74 16 21 C -0.34 -18.57 9.68 84.04 0.81 -17.75 16 22 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 23 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 24 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 25 Si 1.00 41.69 29.55 68.60 2.03 43.72 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 C 0.05 0.61 4.29 86.32 0.37 0.98 16 30 H 0.06 0.82 6.01 -2.38 -0.01 0.80 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 39 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.03 0.46 8.08 -2.39 -0.02 0.45 16 42 H 0.08 0.93 6.21 -2.39 -0.01 0.92 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.41 6.99 8.49 -92.71 -0.79 6.21 16 47 H 0.41 13.08 7.45 -92.71 -0.69 12.39 16 48 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 49 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 50 H 0.40 19.31 7.90 -92.71 -0.73 18.57 16 51 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 52 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 53 H 0.08 0.98 5.81 -2.39 -0.01 0.97 16 Total: -1.00 -66.77 417.11 -2.44 -69.20 By element: Atomic # 1 Polarization: 46.18 SS G_CDS: -1.29 Total: 44.89 kcal Atomic # 6 Polarization: 26.19 SS G_CDS: 7.27 Total: 33.45 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -10.33 Total: -134.27 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -0.11 Total: -56.99 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -66.77 -2.44 -69.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344296687.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.533 kcal (2) G-P(sol) polarization free energy of solvation -66.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds