Wall clock time and date at job start Sat Apr 11 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46101 * 2 1 4 4 C 1.53034 * 109.46394 * 240.02558 * 2 1 3 5 5 C 1.53123 * 109.27951 * 180.80236 * 4 2 1 6 6 C 1.53116 * 109.15868 * 57.65751 * 5 4 2 7 7 C 1.53038 * 109.28037 * 302.34300 * 6 5 4 8 8 N 1.46849 * 109.46310 * 119.97245 * 2 1 3 9 9 C 1.46897 * 111.00364 * 305.85619 * 8 2 1 10 10 C 1.52995 * 109.47662 * 165.48593 * 9 8 2 11 11 C 1.53001 * 109.47649 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47175 * 180.02562 * 11 10 9 13 13 N 1.46497 * 109.46913 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00034 * 180.02562 * 13 12 11 15 15 O 1.21592 * 119.99857 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99882 * 179.97438 * 14 13 12 17 17 C 1.46501 * 119.99750 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47136 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00130 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00219 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00208 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99857 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00143 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99837 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99946 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47291 * 59.99999 * 25 23 21 27 27 H 1.48508 * 109.46937 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47501 * 299.99378 * 25 23 21 29 29 H 1.09002 * 109.47282 * 307.31325 * 1 2 3 30 30 H 1.08996 * 109.47735 * 67.32040 * 1 2 3 31 31 H 1.09004 * 109.46830 * 187.32223 * 1 2 3 32 32 H 1.08999 * 109.50510 * 300.74846 * 4 2 1 33 33 H 1.09007 * 109.50208 * 60.86594 * 4 2 1 34 34 H 1.09000 * 109.52306 * 177.56216 * 5 4 2 35 35 H 1.08997 * 109.52090 * 297.75019 * 5 4 2 36 36 H 1.09002 * 109.50170 * 62.28549 * 6 5 4 37 37 H 1.08999 * 109.50558 * 182.36721 * 6 5 4 38 38 H 1.09001 * 109.46614 * 299.17128 * 7 6 5 39 39 H 1.09000 * 109.46411 * 179.19489 * 7 6 5 40 40 H 1.09002 * 109.46965 * 285.49324 * 9 8 2 41 41 H 1.09005 * 109.47047 * 45.48854 * 9 8 2 42 42 H 1.09005 * 109.47281 * 300.00834 * 10 9 8 43 43 H 1.09005 * 109.46676 * 60.00034 * 10 9 8 44 44 H 1.09002 * 109.47018 * 300.00755 * 11 10 9 45 45 H 1.09002 * 109.46508 * 60.00310 * 11 10 9 46 46 H 1.09000 * 109.47220 * 300.00018 * 12 11 10 47 47 H 1.08998 * 109.46615 * 60.00261 * 12 11 10 48 48 H 0.97004 * 120.00083 * 359.97438 * 13 12 11 49 49 H 0.96997 * 119.99830 * 0.02562 * 16 14 13 50 50 H 1.09004 * 109.47213 * 300.00368 * 17 16 14 51 51 H 1.08996 * 109.47272 * 59.99751 * 17 16 14 52 52 H 0.97004 * 119.99954 * 0.02562 * 20 18 17 53 53 H 0.96993 * 119.99526 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7360 -1.2356 6 6 4.0548 -1.4187 0.0467 7 6 3.4865 -0.6776 1.2591 8 7 2.0193 -0.6917 1.1994 9 6 1.4373 -0.1106 2.4166 10 6 1.6698 -1.0576 3.5955 11 6 1.0642 -0.4521 4.8634 12 6 1.2973 -1.3989 6.0424 13 7 0.7169 -0.8193 7.2562 14 6 0.8024 -1.4819 8.4268 15 8 1.3609 -2.5609 8.4752 16 7 0.2689 -0.9484 9.5436 17 6 0.3614 -1.6688 10.8159 18 6 -0.3086 -0.8634 11.8991 19 8 -0.8141 0.2069 11.6344 20 7 -0.3471 -1.3328 13.1619 21 6 -0.9571 -0.6003 14.1472 22 1 -1.4064 0.3530 13.9116 23 6 -0.9963 -1.0840 15.4492 24 7 -0.4490 -2.2439 15.7360 25 14 -1.8268 -0.0857 16.7919 26 1 -3.2553 0.1214 16.4430 27 1 -1.7336 -0.8163 18.0814 28 1 -1.1522 1.2312 16.9187 29 1 -0.3634 0.6229 0.8173 30 1 -0.3634 0.3962 -0.9481 31 1 -0.3633 -1.0193 0.1310 32 1 1.6659 -1.7447 -1.2576 33 1 1.6895 -0.1981 -2.1399 34 1 3.9380 -1.2862 -2.1020 35 1 3.9456 0.2871 -1.2672 36 1 3.7125 -2.4535 0.0594 37 1 5.1439 -1.3952 0.0829 38 1 3.8403 0.3534 1.2532 39 1 3.8175 -1.1699 2.1736 40 1 1.9105 0.8495 2.6229 41 1 0.3666 0.0353 2.2735 42 1 1.1967 -2.0177 3.3891 43 1 2.7405 -1.2036 3.7386 44 1 1.5377 0.5078 5.0695 45 1 -0.0065 -0.3058 4.7205 46 1 0.8240 -2.3590 5.8365 47 1 2.3680 -1.5447 6.1850 48 1 0.2717 0.0416 7.2176 49 1 -0.1769 -0.0878 9.5048 50 1 -0.1340 -2.6353 10.7230 51 1 1.4099 -1.8212 11.0717 52 1 0.0569 -2.1889 13.3736 53 1 -0.4767 -2.5817 16.6448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344332514.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:40 Heat of formation + Delta-G solvation = -111.826564 kcal Electronic energy + Delta-G solvation = -28433.988438 eV Core-core repulsion = 24338.469766 eV Total energy + Delta-G solvation = -4095.518671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.18954 -40.33462 -40.00564 -37.18975 -36.21357 -35.26462 -35.23131 -33.67161 -33.36166 -32.73054 -29.68713 -28.39558 -27.71899 -26.33656 -25.11860 -23.36283 -22.23607 -22.13284 -21.55268 -21.35005 -20.55212 -20.09592 -19.45999 -17.48355 -17.38139 -17.15641 -16.86768 -16.56137 -16.46405 -16.18795 -15.93169 -15.62553 -15.42009 -15.26386 -15.13579 -14.92858 -14.89767 -14.21217 -14.06671 -13.93352 -13.57764 -13.52642 -13.21362 -13.11019 -12.89003 -12.88557 -12.72197 -12.50342 -12.45807 -12.40699 -12.12798 -12.06200 -11.87925 -11.66765 -11.55037 -11.51212 -11.42748 -11.07044 -11.00783 -10.54418 -10.42169 -10.09085 -9.79293 -9.22640 -8.49700 -6.00081 1.39135 1.43338 1.53656 1.64050 1.91107 2.12921 2.29825 2.88195 3.08159 3.17562 3.37345 3.80626 3.85680 3.93650 3.96166 4.07521 4.17983 4.22754 4.33453 4.37790 4.42395 4.44816 4.46540 4.47550 4.56854 4.59721 4.70810 4.74058 4.76976 4.84277 4.90495 4.96839 4.99298 5.03811 5.08668 5.12542 5.24644 5.26452 5.32156 5.34398 5.35725 5.39559 5.41825 5.51146 5.54009 5.92546 5.98488 6.21570 6.24982 6.49355 7.04469 7.05372 7.44026 7.54996 7.95634 8.66992 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.038775 B = 0.001263 C = 0.001239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.950704 B =22163.114356 C =22594.982572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.033 0.967 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.117 4.117 7 C 0.052 3.948 8 N -0.543 5.543 9 C 0.052 3.948 10 C -0.104 4.104 11 C -0.116 4.116 12 C 0.140 3.860 13 N -0.733 5.733 14 C 0.702 3.298 15 O -0.635 6.635 16 N -0.724 5.724 17 C 0.142 3.858 18 C 0.433 3.567 19 O -0.624 6.624 20 N -0.559 5.559 21 C -0.339 4.339 22 H 0.087 0.913 23 C -0.009 4.009 24 N -0.916 5.916 25 Si 0.997 3.003 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.411 0.589 49 H 0.410 0.590 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.399 0.601 53 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 3.962 -33.688 34.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 H 0.051 0.949 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.076 4.076 8 N -0.268 5.268 9 C -0.075 4.075 10 C -0.143 4.143 11 C -0.154 4.154 12 C 0.016 3.984 13 N -0.389 5.389 14 C 0.401 3.599 15 O -0.517 6.517 16 N -0.382 5.382 17 C 0.013 3.987 18 C 0.220 3.780 19 O -0.512 6.512 20 N -0.194 5.194 21 C -0.469 4.469 22 H 0.105 0.895 23 C -0.210 4.210 24 N -0.556 5.556 25 Si 0.820 3.180 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.247 0.753 49 H 0.248 0.752 50 H 0.109 0.891 51 H 0.109 0.891 52 H 0.233 0.767 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.049 3.086 -33.666 34.344 hybrid contribution -0.158 1.337 1.109 1.744 sum 5.892 4.423 -32.556 33.380 Atomic orbital electron populations 1.21918 0.93747 1.02416 1.02308 1.21649 0.95826 0.95001 0.90429 0.94899 1.21632 0.95600 1.01115 0.96474 1.21589 0.95730 1.00641 0.97949 1.21580 1.00160 0.99795 0.93902 1.22154 0.87278 0.98685 0.99482 1.61963 1.07261 1.55436 1.02158 1.22188 1.00763 0.95432 0.89141 1.21383 1.01140 0.99323 0.92418 1.21651 1.02726 0.98595 0.92477 1.21247 0.97811 0.97002 0.82304 1.44992 1.62683 1.24668 1.06560 1.16008 0.79293 0.83581 0.80990 1.90882 1.51256 1.23366 1.86160 1.44688 1.61859 1.25291 1.06373 1.20574 1.01509 0.94765 0.81859 1.20407 0.85389 0.87867 0.84290 1.90461 1.53083 1.25229 1.82407 1.41824 1.49976 1.21045 1.06562 1.19719 1.34585 1.04124 0.88433 0.89514 1.26122 0.97465 0.97330 1.00089 1.69680 1.44244 1.19307 1.22361 0.84929 0.78567 0.77921 0.76570 1.19482 1.19650 1.19481 0.92273 0.91211 0.92201 0.91719 0.90687 0.91092 0.92380 0.91767 0.90858 0.95405 0.90552 0.94910 0.89557 0.91376 0.91951 0.90382 0.90033 0.92591 0.92683 0.75291 0.75177 0.89143 0.89139 0.76705 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.56 71.98 0.62 -0.80 16 2 C 0.08 0.90 2.44 44.94 0.11 1.01 16 3 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 4 C -0.11 -1.11 5.37 30.65 0.16 -0.94 16 5 C -0.12 -1.16 6.00 30.67 0.18 -0.97 16 6 C -0.12 -1.26 6.09 30.65 0.19 -1.07 16 7 C 0.05 0.64 5.30 86.32 0.46 1.10 16 8 N -0.54 -7.02 4.46 -871.10 -3.88 -10.91 16 9 C 0.05 0.61 4.75 86.30 0.41 1.02 16 10 C -0.10 -1.27 5.24 30.59 0.16 -1.11 16 11 C -0.12 -1.39 5.33 30.59 0.16 -1.23 16 12 C 0.14 2.71 5.67 86.38 0.49 3.20 16 13 N -0.73 -16.60 5.56 -478.53 -2.66 -19.26 16 14 C 0.70 22.67 8.57 179.05 1.53 24.20 16 15 O -0.63 -25.23 16.34 -4.01 -0.07 -25.29 16 16 N -0.72 -24.16 5.53 -482.29 -2.67 -26.83 16 17 C 0.14 5.29 6.15 85.63 0.53 5.82 16 18 C 0.43 20.10 7.85 87.66 0.69 20.78 16 19 O -0.62 -32.11 15.24 -3.06 -0.05 -32.16 16 20 N -0.56 -28.16 5.29 -307.00 -1.62 -29.78 16 21 C -0.34 -18.71 9.68 84.04 0.81 -17.90 16 22 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 23 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 24 N -0.92 -48.75 13.05 21.66 0.28 -48.46 16 25 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 29 H 0.06 0.54 6.46 -2.39 -0.02 0.53 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.08 0.96 6.42 -2.39 -0.02 0.94 16 40 H 0.03 0.39 8.07 -2.39 -0.02 0.37 16 41 H 0.09 0.93 5.61 -2.38 -0.01 0.91 16 42 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.06 0.81 6.59 -2.38 -0.02 0.79 16 44 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 48 H 0.41 7.00 8.49 -92.71 -0.79 6.21 16 49 H 0.41 13.14 7.45 -92.71 -0.69 12.45 16 50 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 51 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 52 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 53 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -67.68 419.73 -2.95 -70.64 By element: Atomic # 1 Polarization: 46.58 SS G_CDS: -1.29 Total: 45.29 kcal Atomic # 6 Polarization: 26.11 SS G_CDS: 6.97 Total: 33.08 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -10.55 Total: -135.25 kcal Atomic # 8 Polarization: -57.34 SS G_CDS: -0.11 Total: -57.45 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -67.68 -2.95 -70.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344332514.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.190 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds