Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.50650 * 2 1 4 4 C 1.53122 * 109.53823 * 120.06355 * 2 1 3 5 5 C 1.53113 * 109.16004 * 177.57695 * 4 2 1 6 6 C 1.53045 * 109.30929 * 302.40128 * 5 4 2 7 7 N 1.46844 * 109.52059 * 59.16263 * 6 5 4 8 8 C 1.46905 * 110.99738 * 174.16128 * 7 6 5 9 9 C 1.53001 * 109.46941 * 300.70020 * 8 7 6 10 10 C 1.53003 * 109.47161 * 60.70266 * 8 7 6 11 11 C 1.52994 * 109.47143 * 180.70093 * 8 7 6 12 12 N 1.46504 * 109.47231 * 54.91726 * 11 8 7 13 13 C 1.34777 * 120.00059 * 184.24333 * 12 11 8 14 14 O 1.21586 * 120.00314 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99953 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00156 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47189 * 180.02562 * 16 15 13 18 18 O 1.21288 * 120.00231 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99731 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99794 * 179.97438 * 19 17 16 21 21 H 1.08005 * 120.00034 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99800 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99687 * 180.02562 * 22 20 19 24 24 Si 1.86791 * 120.00278 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47331 * 89.99888 * 24 22 20 26 26 H 1.48507 * 109.47056 * 210.00056 * 24 22 20 27 27 H 1.48501 * 109.47081 * 329.99752 * 24 22 20 28 28 C 1.46846 * 111.19816 * 298.25656 * 7 6 5 29 29 H 1.08998 * 109.47519 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47084 * 300.07980 * 1 2 3 31 31 H 1.09000 * 109.47190 * 60.07377 * 1 2 3 32 32 H 1.09001 * 109.49487 * 57.68675 * 4 2 1 33 33 H 1.09006 * 109.54876 * 297.49680 * 4 2 1 34 34 H 1.09006 * 109.50392 * 182.44321 * 5 4 2 35 35 H 1.09001 * 109.50770 * 62.36009 * 5 4 2 36 36 H 1.09003 * 109.45994 * 179.17851 * 6 5 4 37 37 H 1.08993 * 109.45809 * 299.15624 * 6 5 4 38 38 H 1.09004 * 109.47022 * 60.00295 * 9 8 7 39 39 H 1.09002 * 109.46766 * 179.97438 * 9 8 7 40 40 H 1.08997 * 109.47102 * 300.00176 * 9 8 7 41 41 H 1.08997 * 109.47128 * 59.99732 * 10 8 7 42 42 H 1.08997 * 109.47011 * 179.97438 * 10 8 7 43 43 H 1.09001 * 109.46696 * 300.00039 * 10 8 7 44 44 H 1.08993 * 109.47382 * 174.91945 * 11 8 7 45 45 H 1.09007 * 109.47504 * 294.92008 * 11 8 7 46 46 H 0.97006 * 119.99837 * 4.24550 * 12 11 8 47 47 H 0.97006 * 119.99943 * 0.02562 * 15 13 12 48 48 H 1.08997 * 109.46969 * 300.00310 * 16 15 13 49 49 H 1.09001 * 109.47076 * 60.00283 * 16 15 13 50 50 H 0.97000 * 120.00461 * 0.02562 * 19 17 16 51 51 H 0.97004 * 119.99966 * 180.02562 * 23 22 20 52 52 H 1.08993 * 109.46294 * 181.76203 * 28 7 6 53 53 H 1.09000 * 109.46205 * 301.74085 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7229 1.2489 5 6 3.5719 -0.7710 1.2099 6 6 4.0237 -1.4716 -0.0736 7 7 3.5092 -0.7408 -1.2387 8 6 4.0371 -1.3041 -2.4885 9 6 5.5651 -1.2258 -2.4779 10 6 3.6021 -2.7657 -2.6130 11 6 3.4939 -0.5074 -3.6764 12 7 3.8063 0.9125 -3.4960 13 6 3.3492 1.8208 -4.3806 14 8 2.6770 1.4619 -5.3281 15 7 3.6370 3.1270 -4.2149 16 6 3.1406 4.1142 -5.1767 17 6 3.5993 5.4899 -4.7665 18 8 4.2749 5.6317 -3.7692 19 7 3.2597 6.5625 -5.5085 20 6 3.6765 7.8141 -5.1351 21 1 4.2774 7.9404 -4.2466 22 6 3.3259 8.9200 -5.8999 23 7 3.7260 10.1196 -5.5422 24 14 2.2861 8.7016 -7.4361 25 1 0.8482 8.8035 -7.0793 26 1 2.6283 9.7601 -8.4200 27 1 2.5553 7.3677 -8.0306 28 6 2.0409 -0.7229 -1.2484 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5127 -0.8906 32 1 1.6461 -1.7382 1.2696 33 1 1.7171 -0.1860 2.1402 34 1 3.9409 -1.3225 2.0747 35 1 3.9686 0.2441 1.2293 36 1 5.1128 -1.4943 -0.1109 37 1 3.6386 -2.4912 -0.0855 38 1 5.9520 -1.7934 -1.6316 39 1 5.9567 -1.6442 -3.4051 40 1 5.8749 -0.1846 -2.3892 41 1 2.5135 -2.8214 -2.6206 42 1 3.9934 -3.1835 -3.5406 43 1 3.9890 -3.3332 -1.7667 44 1 3.9550 -0.8669 -4.5963 45 1 2.4132 -0.6368 -3.7371 46 1 4.3423 1.1989 -2.7399 47 1 4.1736 3.4133 -3.4592 48 1 3.5292 3.8826 -6.1683 49 1 2.0512 4.0853 -5.1975 50 1 2.7197 6.4491 -6.3063 51 1 3.4809 10.8918 -6.0758 52 1 1.6899 -0.2018 -2.1390 53 1 1.6653 -1.7461 -1.2545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344437160.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -93.633802 kcal Electronic energy + Delta-G solvation = -30866.712028 eV Core-core repulsion = 26771.982255 eV Total energy + Delta-G solvation = -4094.729774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48921 -40.75814 -39.98736 -37.50198 -36.25759 -35.23200 -34.88593 -33.81595 -33.03619 -31.65486 -29.62096 -28.55794 -27.59195 -26.75629 -25.73419 -25.01024 -22.71720 -21.84500 -21.44900 -20.80044 -20.55261 -19.91782 -19.25746 -17.76452 -17.43911 -17.14859 -16.76329 -16.66903 -16.07417 -15.77582 -15.73626 -15.47058 -15.40825 -15.20532 -14.88880 -14.74685 -14.51698 -14.42044 -14.26968 -13.96211 -13.90936 -13.66827 -13.42959 -13.31838 -12.96747 -12.92236 -12.71625 -12.66871 -12.43615 -12.41499 -12.13764 -11.99307 -11.95908 -11.64850 -11.56922 -11.49531 -11.36906 -11.09948 -11.00543 -10.63321 -10.36705 -10.29676 -9.71390 -9.16990 -8.44535 -6.06267 1.32062 1.34909 1.44506 1.67035 1.80684 2.19234 2.21452 2.78664 2.89229 3.11874 3.41100 3.60826 3.82230 3.88616 4.00705 4.02196 4.04289 4.16129 4.27449 4.41908 4.42458 4.46515 4.47210 4.61698 4.64792 4.65887 4.73617 4.75289 4.78205 4.86325 4.87607 4.92217 4.96462 5.05005 5.07815 5.16014 5.22389 5.27097 5.30176 5.34006 5.35508 5.45404 5.50354 5.54849 5.59186 5.89626 6.03210 6.20652 6.24099 6.50372 6.79488 7.09726 7.30274 7.60197 7.79977 8.71988 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015693 B = 0.002280 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.811183 B =12279.992866 C =12856.445421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.058 0.942 4 C -0.111 4.111 5 C -0.116 4.116 6 C 0.052 3.948 7 N -0.531 5.531 8 C 0.101 3.899 9 C -0.139 4.139 10 C -0.173 4.173 11 C 0.154 3.846 12 N -0.718 5.718 13 C 0.705 3.295 14 O -0.635 6.635 15 N -0.728 5.728 16 C 0.140 3.860 17 C 0.447 3.553 18 O -0.613 6.613 19 N -0.579 5.579 20 C -0.330 4.330 21 H 0.063 0.937 22 C -0.008 4.008 23 N -0.927 5.927 24 Si 0.959 3.041 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.233 1.233 28 C 0.062 3.938 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.410 0.590 47 H 0.408 0.592 48 H 0.100 0.900 49 H 0.100 0.900 50 H 0.392 0.608 51 H 0.281 0.719 52 H 0.060 0.940 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.884 -30.128 8.785 31.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.077 0.923 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.075 4.075 7 N -0.256 5.256 8 C 0.011 3.989 9 C -0.197 4.197 10 C -0.233 4.233 11 C 0.029 3.971 12 N -0.374 5.374 13 C 0.404 3.596 14 O -0.517 6.517 15 N -0.386 5.386 16 C 0.011 3.989 17 C 0.234 3.766 18 O -0.499 6.499 19 N -0.219 5.219 20 C -0.459 4.459 21 H 0.081 0.919 22 C -0.208 4.208 23 N -0.566 5.566 24 Si 0.779 3.221 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.156 1.156 28 C -0.065 4.065 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.247 0.753 47 H 0.245 0.755 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.228 0.772 51 H 0.091 0.909 52 H 0.078 0.922 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.855 -29.643 8.600 30.997 hybrid contribution -0.349 0.286 -0.216 0.501 sum -3.204 -29.357 8.383 30.698 Atomic orbital electron populations 1.21766 0.94764 1.02006 1.01672 1.21121 0.95356 0.99509 0.94759 0.92307 1.21600 0.95852 1.00318 0.97059 1.21581 0.95498 1.01239 0.97053 1.22215 1.00614 0.95181 0.89469 1.62070 1.07779 1.54014 1.01702 1.21275 0.96294 0.92754 0.88584 1.21914 0.92185 1.02633 1.02930 1.22361 1.01760 0.95486 1.03647 1.21310 0.99773 0.78560 0.97472 1.44793 1.57517 1.06256 1.28799 1.15932 0.80046 0.80745 0.82851 1.90867 1.46098 1.80375 1.34347 1.44699 1.58240 1.04597 1.31015 1.20661 1.00651 0.84093 0.93500 1.20512 0.84164 0.86757 0.85158 1.90523 1.43744 1.86418 1.29236 1.41919 1.48518 1.05861 1.25564 1.19031 1.32675 0.82888 1.11339 0.91860 1.26060 0.98700 0.93836 1.02220 1.69784 1.46054 0.99527 1.41275 0.85448 0.78976 0.80296 0.77427 1.18108 1.19809 1.15604 1.22112 0.87529 0.98820 0.98080 0.92055 0.92142 0.93575 0.91826 0.91817 0.90326 0.92249 0.89573 0.94078 0.90836 0.91329 0.92425 0.92579 0.90905 0.90779 0.91660 0.92679 0.75308 0.75451 0.88210 0.88256 0.77246 0.90941 0.92189 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.20 71.98 0.66 -1.53 16 2 C -0.09 -1.43 2.88 -10.74 -0.03 -1.47 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -1.43 5.29 30.67 0.16 -1.27 16 5 C -0.12 -1.40 6.09 30.65 0.19 -1.22 16 6 C 0.05 0.61 4.65 86.33 0.40 1.01 16 7 N -0.53 -7.67 3.97 -846.84 -3.36 -11.03 16 8 C 0.10 1.36 0.36 3.53 0.00 1.36 16 9 C -0.14 -1.65 8.10 71.98 0.58 -1.06 16 10 C -0.17 -1.87 7.79 71.98 0.56 -1.31 16 11 C 0.15 2.97 3.93 86.38 0.34 3.31 16 12 N -0.72 -16.54 5.14 -478.54 -2.46 -19.00 16 13 C 0.70 21.73 8.57 179.05 1.53 23.27 16 14 O -0.63 -23.46 16.34 -3.99 -0.07 -23.53 16 15 N -0.73 -23.40 5.53 -482.30 -2.67 -26.06 16 16 C 0.14 4.76 6.15 85.64 0.53 5.29 16 17 C 0.45 19.84 7.85 87.66 0.69 20.52 16 18 O -0.61 -32.05 15.24 -3.06 -0.05 -32.10 16 19 N -0.58 -26.98 5.09 -306.98 -1.56 -28.54 16 20 C -0.33 -18.93 10.16 84.04 0.85 -18.07 16 21 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 22 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 23 N -0.93 -54.81 13.96 21.66 0.30 -54.51 16 24 Si 0.96 38.52 27.74 68.60 1.90 40.42 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.23 -8.01 6.52 99.48 0.65 -7.37 16 28 C 0.06 1.02 3.95 86.33 0.34 1.36 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 34 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.88 5.99 -2.39 -0.01 0.87 16 37 H 0.04 0.44 6.64 -2.39 -0.02 0.42 16 38 H 0.07 0.69 6.27 -2.39 -0.01 0.67 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.81 7.10 -2.39 -0.02 0.79 16 41 H 0.06 0.67 6.61 -2.39 -0.02 0.66 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.67 6.55 -2.39 -0.02 0.65 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 1.22 6.52 -2.38 -0.02 1.20 16 46 H 0.41 8.55 7.28 -92.70 -0.67 7.88 16 47 H 0.41 13.24 7.45 -92.70 -0.69 12.55 16 48 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 49 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 50 H 0.39 15.39 5.76 -92.71 -0.53 14.86 16 51 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 52 H 0.06 1.23 6.03 -2.39 -0.01 1.22 16 53 H 0.04 0.60 6.69 -2.39 -0.02 0.58 16 Total: -1.00 -72.47 404.67 -1.71 -74.18 By element: Atomic # 1 Polarization: 51.00 SS G_CDS: -1.02 Total: 49.98 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 7.28 Total: 30.20 kcal Atomic # 7 Polarization: -129.40 SS G_CDS: -9.75 Total: -139.15 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.11 Total: -55.63 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.42 kcal Total: -72.47 -1.71 -74.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344437160.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.455 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds