Wall clock time and date at job start Sat Apr 11 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46726 * 2 1 4 4 C 1.52998 * 109.46794 * 119.99762 * 2 1 3 5 5 N 1.46904 * 109.46582 * 175.21028 * 4 2 1 6 6 C 1.46850 * 110.99899 * 198.90294 * 5 4 2 7 7 C 1.53037 * 109.52545 * 174.15911 * 6 5 4 8 8 H 1.09002 * 109.50105 * 299.24191 * 7 6 5 9 9 C 1.52994 * 109.53765 * 179.13910 * 7 6 5 10 10 C 1.53116 * 109.27485 * 59.17849 * 7 6 5 11 11 C 1.53122 * 109.16390 * 302.34487 * 10 7 6 12 12 H 1.09000 * 109.50118 * 177.59283 * 11 10 7 13 13 C 1.52997 * 109.53601 * 297.69340 * 11 10 7 14 14 C 1.46845 * 111.00225 * 74.69350 * 5 4 2 15 15 N 1.46497 * 109.47375 * 240.00347 * 2 1 3 16 16 C 1.34773 * 120.00319 * 84.01528 * 15 2 1 17 17 O 1.21592 * 119.99830 * 0.02562 * 16 15 2 18 18 N 1.34771 * 120.00351 * 179.97438 * 16 15 2 19 19 C 1.46503 * 120.00304 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47219 * 179.97438 * 19 18 16 21 21 O 1.21295 * 119.99880 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00092 * 179.97438 * 20 19 18 23 23 C 1.37101 * 120.00024 * 180.02562 * 22 20 19 24 24 H 1.08003 * 119.99960 * 359.97438 * 23 22 20 25 25 C 1.38954 * 120.00046 * 179.73011 * 23 22 20 26 26 N 1.31409 * 119.99533 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99983 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47234 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47042 * 119.99661 * 27 25 23 30 30 H 1.48500 * 109.46584 * 239.99708 * 27 25 23 31 31 H 1.09004 * 109.47010 * 60.00118 * 1 2 3 32 32 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47603 * 299.99717 * 1 2 3 34 34 H 1.08996 * 109.47410 * 295.20988 * 4 2 1 35 35 H 1.09000 * 109.46875 * 55.21501 * 4 2 1 36 36 H 1.08998 * 109.46275 * 294.18181 * 6 5 4 37 37 H 1.09000 * 109.45955 * 54.14202 * 6 5 4 38 38 H 1.09007 * 109.47342 * 300.18254 * 9 7 6 39 39 H 1.09002 * 109.47171 * 60.17602 * 9 7 6 40 40 H 1.08998 * 109.47517 * 180.18028 * 9 7 6 41 41 H 1.09003 * 109.51960 * 182.43910 * 10 7 6 42 42 H 1.09003 * 109.57465 * 62.28582 * 10 7 6 43 43 H 1.09002 * 109.46994 * 179.81942 * 13 11 10 44 44 H 1.08997 * 109.47394 * 299.82525 * 13 11 10 45 45 H 1.09006 * 109.46548 * 59.82328 * 13 11 10 46 46 H 1.08997 * 109.46187 * 305.85352 * 14 5 4 47 47 H 1.09002 * 109.46074 * 65.83512 * 14 5 4 48 48 H 0.97002 * 119.99833 * 264.02488 * 15 2 1 49 49 H 0.97002 * 119.99858 * 0.02562 * 18 16 15 50 50 H 1.09004 * 109.46913 * 60.00441 * 19 18 16 51 51 H 1.08998 * 109.47248 * 300.00183 * 19 18 16 52 52 H 0.96997 * 119.99949 * 0.02562 * 22 20 19 53 53 H 0.97005 * 119.99665 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5044 -0.8221 1.1928 6 6 3.9955 -1.8648 2.1029 7 6 5.5036 -2.0416 1.9118 8 1 5.7070 -2.3468 0.8853 9 6 6.0192 -3.1127 2.8749 10 6 6.2087 -0.7133 2.1994 11 6 5.6449 0.3664 1.2715 12 1 6.1127 1.3238 1.5007 13 6 5.9337 -0.0079 -0.1836 14 6 4.1327 0.4734 1.4812 15 7 2.0184 -0.6905 -1.1962 16 6 2.1283 -0.0232 -2.3619 17 8 1.8226 1.1522 -2.4207 18 7 2.5781 -0.6583 -3.4622 19 6 2.6982 0.0673 -4.7292 20 6 3.2202 -0.8632 -5.7935 21 8 3.4673 -2.0189 -5.5206 22 7 3.4117 -0.4115 -7.0488 23 6 3.8862 -1.2581 -8.0171 24 1 4.1069 -2.2870 -7.7739 25 6 4.0782 -0.7939 -9.3126 26 7 3.8046 0.4566 -9.6097 27 14 4.7240 -1.9477 -10.6321 28 1 4.9517 -3.2927 -10.0454 29 1 3.7304 -2.0484 -11.7311 30 1 6.0038 -1.4190 -11.1686 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.7484 -0.1602 2.1372 35 1 1.6082 -1.7211 1.2932 36 1 3.7917 -1.5730 3.1331 37 1 3.4890 -2.8050 1.8850 38 1 5.8142 -2.8077 3.9012 39 1 5.5168 -4.0581 2.6698 40 1 7.0938 -3.2356 2.7402 41 1 7.2787 -0.8232 2.0226 42 1 6.0386 -0.4268 3.2373 43 1 5.5291 0.7597 -0.8434 44 1 7.0107 -0.0840 -0.3324 45 1 5.4667 -0.9661 -0.4118 46 1 3.7260 1.2313 0.8117 47 1 3.9285 0.7541 2.5144 48 1 2.2625 -1.6281 -1.1492 49 1 2.8224 -1.5958 -3.4152 50 1 3.3887 0.9017 -4.6061 51 1 1.7199 0.4460 -5.0252 52 1 3.2138 0.5127 -7.2671 53 1 3.9383 0.7806 -10.5142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345104039.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:56 Heat of formation + Delta-G solvation = -105.691260 kcal Electronic energy + Delta-G solvation = -30813.019165 eV Core-core repulsion = 26717.766541 eV Total energy + Delta-G solvation = -4095.252624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.25374 -40.51282 -39.92720 -37.30906 -36.18074 -35.16408 -34.59827 -34.00759 -33.35695 -31.76204 -28.88229 -27.78059 -27.64879 -27.21008 -26.33148 -23.79708 -22.79719 -22.10975 -21.37340 -21.17489 -20.09978 -19.67850 -19.42187 -17.47797 -17.36517 -16.99749 -16.70354 -16.54739 -16.18720 -15.98275 -15.66917 -15.59217 -15.42102 -15.16518 -15.07549 -14.80841 -14.59415 -13.98039 -13.88268 -13.76945 -13.63624 -13.53639 -13.32707 -13.00688 -12.94183 -12.90003 -12.85525 -12.55740 -12.47529 -12.43124 -12.31837 -12.10353 -11.87471 -11.77493 -11.56424 -11.39270 -11.25749 -11.05666 -10.96459 -10.52843 -10.29059 -10.08151 -9.66695 -9.15807 -8.49683 -5.99685 1.36081 1.43208 1.57233 1.74268 1.92046 2.27551 2.30316 2.89495 3.11031 3.17638 3.45882 3.76567 3.77430 3.94870 3.99780 4.18272 4.23894 4.26227 4.32606 4.40065 4.46109 4.49362 4.53303 4.58947 4.64517 4.67174 4.74442 4.81413 4.81707 4.85996 4.88995 4.92309 4.93468 5.07303 5.10511 5.18999 5.21701 5.31888 5.35083 5.38342 5.42546 5.44455 5.45867 5.63249 5.72161 5.94107 6.10523 6.18818 6.24561 6.50120 7.05198 7.18391 7.45645 7.69183 7.96591 8.67674 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.002367 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.475350 B =11825.420799 C =12960.101770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 H 0.060 0.940 4 C 0.055 3.945 5 N -0.542 5.542 6 C 0.066 3.934 7 C -0.091 4.091 8 H 0.066 0.934 9 C -0.141 4.141 10 C -0.105 4.105 11 C -0.087 4.087 12 H 0.072 0.928 13 C -0.131 4.131 14 C 0.065 3.935 15 N -0.709 5.709 16 C 0.706 3.294 17 O -0.638 6.638 18 N -0.726 5.726 19 C 0.144 3.856 20 C 0.436 3.564 21 O -0.622 6.622 22 N -0.561 5.561 23 C -0.335 4.335 24 H 0.086 0.914 25 C -0.012 4.012 26 N -0.917 5.917 27 Si 0.997 3.003 28 H -0.269 1.269 29 H -0.271 1.271 30 H -0.271 1.271 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.041 0.959 48 H 0.407 0.593 49 H 0.408 0.592 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.398 0.602 53 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -2.705 27.822 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.078 0.922 4 C -0.074 4.074 5 N -0.266 5.266 6 C -0.061 4.061 7 C -0.110 4.110 8 H 0.084 0.916 9 C -0.199 4.199 10 C -0.142 4.142 11 C -0.106 4.106 12 H 0.090 0.910 13 C -0.188 4.188 14 C -0.063 4.063 15 N -0.364 5.364 16 C 0.406 3.594 17 O -0.520 6.520 18 N -0.384 5.384 19 C 0.016 3.984 20 C 0.223 3.777 21 O -0.510 6.510 22 N -0.197 5.197 23 C -0.464 4.464 24 H 0.104 0.896 25 C -0.213 4.213 26 N -0.558 5.558 27 Si 0.820 3.180 28 H -0.194 1.194 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.242 0.758 49 H 0.245 0.755 50 H 0.104 0.896 51 H 0.106 0.894 52 H 0.232 0.768 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.479 -2.429 27.302 27.414 hybrid contribution 0.232 -0.153 -0.452 0.530 sum -0.247 -2.582 26.850 26.975 Atomic orbital electron populations 1.22128 0.94591 1.02810 1.02161 1.20818 0.93624 0.96145 0.83128 0.92167 1.22391 0.87526 1.02016 0.95433 1.61740 1.05241 1.06285 1.53309 1.22149 0.95262 0.94880 0.93850 1.21177 0.94345 0.95309 1.00149 0.91585 1.21748 1.01061 0.98134 0.98982 1.21628 0.99598 0.94240 0.98761 1.21148 0.94844 0.99087 0.95533 0.90967 1.21646 1.00062 1.01491 0.95625 1.22048 0.94497 0.90970 0.98740 1.44770 1.70189 1.14447 1.06968 1.15947 0.78043 0.84479 0.80918 1.90859 1.59188 1.16363 1.85599 1.44670 1.70734 1.15251 1.07708 1.20512 1.02119 0.93400 0.82417 1.20420 0.84176 0.88951 0.84189 1.90466 1.58605 1.20278 1.81673 1.41848 1.56842 1.13376 1.07604 1.19768 1.42024 0.95117 0.89482 0.89594 1.26139 0.96999 0.98161 0.99955 1.69694 1.48056 1.15737 1.22284 0.84808 0.78065 0.77871 0.77218 1.19375 1.19634 1.19654 0.94529 0.91143 0.89897 0.91717 0.88469 0.94356 0.90018 0.92225 0.92214 0.92591 0.91928 0.91559 0.95386 0.93519 0.92029 0.92511 0.94112 0.75770 0.75480 0.89601 0.89386 0.76773 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.47 71.98 0.68 -2.10 16 2 C 0.17 3.29 2.55 44.99 0.11 3.40 16 3 H 0.06 1.50 6.42 -2.38 -0.02 1.49 16 4 C 0.05 0.71 4.55 86.30 0.39 1.11 16 5 N -0.54 -8.30 3.61 -896.36 -3.23 -11.53 16 6 C 0.07 0.82 4.72 86.33 0.41 1.23 16 7 C -0.09 -1.24 2.53 -10.74 -0.03 -1.27 16 8 H 0.07 1.16 6.58 -2.39 -0.02 1.14 16 9 C -0.14 -1.52 9.20 71.98 0.66 -0.86 16 10 C -0.10 -1.47 4.79 30.67 0.15 -1.33 16 11 C -0.09 -1.52 3.21 -10.74 -0.03 -1.55 16 12 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 13 C -0.13 -2.92 8.76 71.98 0.63 -2.29 16 14 C 0.07 1.12 4.73 86.33 0.41 1.52 16 15 N -0.71 -16.76 4.82 -457.81 -2.21 -18.96 16 16 C 0.71 23.22 8.52 179.06 1.53 24.74 16 17 O -0.64 -25.38 16.02 -4.01 -0.06 -25.44 16 18 N -0.73 -25.11 5.53 -482.29 -2.67 -27.77 16 19 C 0.14 5.57 6.15 85.63 0.53 6.09 16 20 C 0.44 20.63 7.85 87.66 0.69 21.32 16 21 O -0.62 -32.70 15.24 -3.08 -0.05 -32.75 16 22 N -0.56 -28.79 5.29 -306.98 -1.62 -30.41 16 23 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 24 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 25 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 26 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 27 Si 1.00 42.24 29.55 68.60 2.03 44.27 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 30 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 0.70 8.01 -2.39 -0.02 0.68 16 35 H 0.10 0.97 7.81 -2.39 -0.02 0.95 16 36 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 0.90 7.94 -2.39 -0.02 0.89 16 38 H 0.06 0.55 8.14 -2.38 -0.02 0.54 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.47 6.01 -2.38 -0.01 1.46 16 46 H 0.06 1.21 6.74 -2.39 -0.02 1.19 16 47 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.41 8.20 8.61 -92.71 -0.80 7.40 16 49 H 0.41 13.85 7.45 -92.71 -0.69 13.16 16 50 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 51 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 52 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 53 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -67.39 417.72 -1.43 -68.82 By element: Atomic # 1 Polarization: 52.28 SS G_CDS: -1.30 Total: 50.98 kcal Atomic # 6 Polarization: 24.57 SS G_CDS: 7.40 Total: 31.97 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -9.45 Total: -137.84 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -0.11 Total: -58.19 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -67.39 -1.43 -68.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345104039.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.872 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds