Wall clock time and date at job start Sat Apr 11 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47120 * 2 1 4 4 C 1.53005 * 109.47149 * 120.00257 * 2 1 3 5 5 N 1.46898 * 109.46979 * 175.00280 * 4 2 1 6 6 C 1.46850 * 110.99813 * 190.00067 * 5 4 2 7 7 C 1.53033 * 109.52490 * 174.15761 * 6 5 4 8 8 H 1.09004 * 109.50318 * 299.23790 * 7 6 5 9 9 C 1.53003 * 109.53554 * 179.13844 * 7 6 5 10 10 C 1.53119 * 109.27787 * 59.17980 * 7 6 5 11 11 C 1.53126 * 109.16048 * 302.34386 * 10 7 6 12 12 H 1.09006 * 109.50177 * 297.71578 * 11 10 7 13 13 C 1.52996 * 109.50254 * 177.59784 * 11 10 7 14 14 C 1.46845 * 111.00565 * 65.79001 * 5 4 2 15 15 N 1.46499 * 109.47070 * 240.00265 * 2 1 3 16 16 C 1.34772 * 120.00434 * 85.00266 * 15 2 1 17 17 O 1.21597 * 119.99749 * 359.97438 * 16 15 2 18 18 N 1.34778 * 120.00380 * 179.97438 * 16 15 2 19 19 C 1.46499 * 119.99957 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47105 * 180.02562 * 19 18 16 21 21 O 1.21293 * 119.99616 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00083 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99895 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00306 * 359.97438 * 23 22 20 25 25 C 1.38946 * 120.00160 * 179.97438 * 23 22 20 26 26 N 1.31417 * 120.00052 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00327 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47074 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47269 * 120.00149 * 27 25 23 30 30 H 1.48505 * 109.47171 * 240.00111 * 27 25 23 31 31 H 1.08997 * 109.46693 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46824 * 299.99845 * 1 2 3 33 33 H 1.09001 * 109.47020 * 59.99603 * 1 2 3 34 34 H 1.08999 * 109.46784 * 54.99735 * 4 2 1 35 35 H 1.09002 * 109.46549 * 295.00002 * 4 2 1 36 36 H 1.09005 * 109.46186 * 54.13967 * 6 5 4 37 37 H 1.09004 * 109.45360 * 294.17122 * 6 5 4 38 38 H 1.09000 * 109.46879 * 300.17725 * 9 7 6 39 39 H 1.08998 * 109.47098 * 60.17886 * 9 7 6 40 40 H 1.09002 * 109.46767 * 180.17663 * 9 7 6 41 41 H 1.08999 * 109.52185 * 182.44278 * 10 7 6 42 42 H 1.09000 * 109.57842 * 62.27972 * 10 7 6 43 43 H 1.08999 * 109.47332 * 59.99997 * 13 11 10 44 44 H 1.09001 * 109.46812 * 180.02562 * 13 11 10 45 45 H 1.08995 * 109.47049 * 299.99849 * 13 11 10 46 46 H 1.08995 * 109.46315 * 65.81881 * 14 5 4 47 47 H 1.09005 * 109.45975 * 305.85394 * 14 5 4 48 48 H 0.97007 * 119.99913 * 264.99580 * 15 2 1 49 49 H 0.96992 * 119.99638 * 359.97438 * 18 16 15 50 50 H 1.09001 * 109.46897 * 299.99758 * 19 18 16 51 51 H 1.08998 * 109.47470 * 60.00226 * 19 18 16 52 52 H 0.96998 * 119.99949 * 359.97438 * 22 20 19 53 53 H 0.96995 * 120.00231 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1904 6 6 4.0106 -1.7141 2.2451 7 6 5.5168 -1.9153 2.0645 8 1 5.7089 -2.3760 1.0954 9 6 6.0487 -2.8227 3.1757 10 6 6.2201 -0.5570 2.1332 11 6 5.6405 0.3642 1.0560 12 1 5.8345 -0.0606 0.0711 13 6 6.2956 1.7431 1.1566 14 6 4.1306 0.4992 1.2659 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8575 1.1615 -2.4118 18 7 2.5969 -0.6534 -3.4575 19 6 2.7363 0.0773 -4.7195 20 6 3.2529 -0.8546 -5.7852 21 8 3.4825 -2.0150 -5.5167 22 7 3.4607 -0.3985 -7.0363 23 6 3.9312 -1.2463 -8.0056 24 1 4.1357 -2.2795 -7.7666 25 6 4.1450 -0.7762 -9.2955 26 7 3.8968 0.4811 -9.5863 27 14 4.7867 -1.9311 -10.6161 28 1 4.9851 -3.2840 -10.0368 29 1 3.8039 -2.0079 -11.7267 30 1 6.0808 -1.4195 -11.1349 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6053 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 3.5053 -2.6780 2.1824 37 1 3.8183 -1.2661 3.2200 38 1 5.8551 -2.3622 4.1445 39 1 5.5477 -3.7895 3.1263 40 1 7.1221 -2.9627 3.0478 41 1 7.2882 -0.6907 1.9618 42 1 6.0617 -0.1129 3.1159 43 1 7.3714 1.6458 1.0105 44 1 5.8823 2.3985 0.3899 45 1 6.0996 2.1676 2.1411 46 1 3.9378 0.9368 2.2454 47 1 3.7126 1.1431 0.4920 48 1 2.2491 -1.6318 -1.1527 49 1 2.8282 -1.5943 -3.4137 50 1 1.7653 0.4706 -5.0208 51 1 3.4369 0.9017 -4.5866 52 1 3.2775 0.5295 -7.2509 53 1 4.0457 0.8091 -10.4869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345104041.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:59 Heat of formation + Delta-G solvation = -109.428412 kcal Electronic energy + Delta-G solvation = -30504.583430 eV Core-core repulsion = 26409.168750 eV Total energy + Delta-G solvation = -4095.414680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.27380 -40.43594 -39.90582 -37.32078 -36.18905 -35.18135 -34.64895 -34.35910 -33.36184 -31.79624 -28.89735 -27.84331 -27.56035 -27.21075 -26.33955 -23.82658 -22.31903 -21.88445 -21.36529 -21.13329 -20.61010 -20.09767 -19.50500 -17.51550 -17.35934 -16.94111 -16.66075 -16.57186 -16.28741 -15.97316 -15.69498 -15.56187 -15.48283 -15.40647 -15.14550 -14.91378 -14.06429 -13.94140 -13.87126 -13.67186 -13.61720 -13.53904 -13.37291 -13.22972 -13.04045 -12.93256 -12.90271 -12.67987 -12.62157 -12.43530 -12.35817 -12.10520 -11.77245 -11.71139 -11.56852 -11.49426 -11.28815 -11.12152 -11.03705 -10.53631 -10.31216 -10.08633 -9.69486 -9.22451 -8.49988 -6.00093 1.35837 1.43042 1.56990 1.72093 1.91428 2.24649 2.29940 2.86093 3.10014 3.17229 3.43880 3.71507 3.74545 3.89043 4.00156 4.12092 4.21837 4.23936 4.35142 4.41142 4.45243 4.46609 4.49101 4.56317 4.61762 4.66074 4.71752 4.74159 4.79496 4.81658 4.84825 4.85921 4.92793 5.04302 5.06989 5.12801 5.23157 5.29683 5.31629 5.35529 5.37748 5.41893 5.42739 5.56625 5.69150 5.93611 6.08217 6.15583 6.20738 6.49665 7.04798 7.15769 7.45007 7.66353 7.96077 8.67352 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.002285 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.303623 B =12249.167416 C =13175.701971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 H 0.063 0.937 4 C 0.055 3.945 5 N -0.546 5.546 6 C 0.065 3.935 7 C -0.090 4.090 8 H 0.062 0.938 9 C -0.140 4.140 10 C -0.104 4.104 11 C -0.090 4.090 12 H 0.053 0.947 13 C -0.143 4.143 14 C 0.067 3.933 15 N -0.711 5.711 16 C 0.706 3.294 17 O -0.637 6.637 18 N -0.726 5.726 19 C 0.144 3.856 20 C 0.435 3.565 21 O -0.623 6.623 22 N -0.561 5.561 23 C -0.335 4.335 24 H 0.086 0.914 25 C -0.012 4.012 26 N -0.917 5.917 27 Si 0.997 3.003 28 H -0.270 1.270 29 H -0.271 1.271 30 H -0.271 1.271 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.055 0.945 48 H 0.408 0.592 49 H 0.408 0.592 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.398 0.602 53 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.524 -1.832 28.086 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 H 0.081 0.919 4 C -0.073 4.073 5 N -0.270 5.270 6 C -0.062 4.062 7 C -0.109 4.109 8 H 0.080 0.920 9 C -0.198 4.198 10 C -0.141 4.141 11 C -0.109 4.109 12 H 0.072 0.928 13 C -0.201 4.201 14 C -0.061 4.061 15 N -0.366 5.366 16 C 0.405 3.595 17 O -0.519 6.519 18 N -0.384 5.384 19 C 0.015 3.985 20 C 0.222 3.778 21 O -0.511 6.511 22 N -0.196 5.196 23 C -0.464 4.464 24 H 0.104 0.896 25 C -0.213 4.213 26 N -0.558 5.558 27 Si 0.820 3.180 28 H -0.194 1.194 29 H -0.196 1.196 30 H -0.196 1.196 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.243 0.757 49 H 0.245 0.755 50 H 0.107 0.893 51 H 0.105 0.895 52 H 0.233 0.767 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.495 -1.628 27.592 27.644 hybrid contribution 0.227 -0.109 -0.513 0.572 sum -0.268 -1.736 27.079 27.135 Atomic orbital electron populations 1.22127 0.94367 1.02911 1.02251 1.20873 0.93923 0.96217 0.83057 0.91896 1.22404 0.87417 1.02071 0.95453 1.61794 1.05141 1.11778 1.48318 1.22145 0.95224 0.96924 0.91905 1.21149 0.94331 0.95816 0.99636 0.91977 1.21738 1.01062 0.99211 0.97801 1.21657 0.99530 0.94692 0.98245 1.21117 0.94211 0.96269 0.99272 0.92838 1.21759 1.00674 0.95828 1.01865 1.22056 0.94444 0.90093 0.99544 1.44804 1.70411 1.14030 1.07349 1.15957 0.78033 0.84563 0.80902 1.90861 1.59571 1.15981 1.85495 1.44679 1.70857 1.14807 1.08030 1.20522 1.02172 0.93309 0.82466 1.20423 0.84159 0.88982 0.84217 1.90466 1.58938 1.19988 1.81683 1.41846 1.56947 1.12994 1.07853 1.19765 1.42175 0.94683 0.89784 0.89607 1.26140 0.96973 0.98153 0.99987 1.69692 1.48174 1.15271 1.22618 0.84808 0.78077 0.77856 0.77210 1.19396 1.19616 1.19633 0.91062 0.89816 0.94415 0.88302 0.91887 0.89857 0.94346 0.92175 0.92061 0.92474 0.91868 0.91557 0.92080 0.93642 0.91768 0.94322 0.92632 0.75679 0.75458 0.89316 0.89509 0.76748 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.48 71.98 0.68 -2.10 16 2 C 0.16 3.27 2.35 44.99 0.11 3.38 16 3 H 0.06 1.58 6.10 -2.39 -0.01 1.56 16 4 C 0.05 0.75 4.52 86.31 0.39 1.14 16 5 N -0.55 -8.97 4.38 -896.36 -3.93 -12.90 16 6 C 0.07 0.86 4.74 86.32 0.41 1.27 16 7 C -0.09 -1.28 2.88 -10.74 -0.03 -1.31 16 8 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 9 C -0.14 -1.51 9.20 71.98 0.66 -0.85 16 10 C -0.10 -1.54 4.57 30.68 0.14 -1.40 16 11 C -0.09 -1.67 2.88 -10.74 -0.03 -1.70 16 12 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 13 C -0.14 -2.45 9.20 71.98 0.66 -1.79 16 14 C 0.07 1.23 4.57 86.33 0.39 1.63 16 15 N -0.71 -17.11 4.80 -457.80 -2.20 -19.31 16 16 C 0.71 23.36 8.53 179.06 1.53 24.89 16 17 O -0.64 -25.33 16.01 -4.02 -0.06 -25.40 16 18 N -0.73 -25.27 5.53 -482.29 -2.67 -27.94 16 19 C 0.14 5.56 6.15 85.63 0.53 6.09 16 20 C 0.44 20.65 7.85 87.66 0.69 21.34 16 21 O -0.62 -32.85 15.24 -3.07 -0.05 -32.90 16 22 N -0.56 -28.80 5.29 -306.98 -1.62 -30.42 16 23 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 24 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 25 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 26 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 27 Si 1.00 42.25 29.55 68.60 2.03 44.28 16 28 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 29 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 30 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 1.05 7.99 -2.39 -0.02 1.03 16 35 H 0.06 0.72 8.12 -2.39 -0.02 0.70 16 36 H 0.08 0.95 8.02 -2.38 -0.02 0.93 16 37 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 1.30 6.32 -2.38 -0.02 1.29 16 48 H 0.41 8.44 8.62 -92.70 -0.80 7.64 16 49 H 0.41 13.97 7.45 -92.71 -0.69 13.28 16 50 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 51 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 52 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 53 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -67.58 421.69 -2.12 -69.70 By element: Atomic # 1 Polarization: 52.84 SS G_CDS: -1.31 Total: 51.53 kcal Atomic # 6 Polarization: 25.08 SS G_CDS: 7.41 Total: 32.49 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -10.13 Total: -139.70 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -0.11 Total: -58.30 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -67.58 -2.12 -69.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345104041.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.727 kcal (2) G-P(sol) polarization free energy of solvation -67.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds