Wall clock time and date at job start Sat Apr 11 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47827 * 2 1 4 4 C 1.53001 * 109.47556 * 239.99847 * 2 1 3 5 5 C 1.52989 * 109.47636 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46976 * 60.00110 * 5 4 2 7 7 C 1.53001 * 109.47345 * 299.99931 * 6 5 4 8 8 C 1.53006 * 109.47100 * 300.00131 * 7 6 5 9 9 N 1.46494 * 109.46885 * 185.31984 * 8 7 6 10 10 C 1.34774 * 119.99635 * 178.70614 * 9 8 7 11 11 O 1.21583 * 120.00344 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00125 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00348 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.46993 * 180.02562 * 13 12 10 15 15 O 1.21293 * 120.00140 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99842 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00088 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00004 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00008 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99913 * 359.73058 * 19 17 16 21 21 Si 1.86800 * 119.99857 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47070 * 90.00251 * 21 19 17 23 23 H 1.48501 * 109.47007 * 210.00055 * 21 19 17 24 24 H 1.48502 * 109.47182 * 330.00067 * 21 19 17 25 25 N 1.46904 * 109.47257 * 180.02562 * 7 6 5 26 26 C 1.46901 * 110.99594 * 295.68786 * 25 7 6 27 27 C 1.46892 * 111.00155 * 59.64307 * 25 7 6 28 28 C 1.53000 * 109.46833 * 120.00093 * 2 1 3 29 29 H 1.08999 * 109.47117 * 300.00483 * 1 2 3 30 30 H 1.09002 * 109.46721 * 59.99505 * 1 2 3 31 31 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46926 * 300.00478 * 4 2 1 33 33 H 1.09001 * 109.46558 * 60.00004 * 4 2 1 34 34 H 1.08999 * 109.47630 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.47604 * 300.00066 * 5 4 2 36 36 H 1.09007 * 109.47252 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47277 * 60.00292 * 6 5 4 38 38 H 1.08998 * 109.46795 * 65.31727 * 8 7 6 39 39 H 1.09002 * 109.46768 * 305.32193 * 8 7 6 40 40 H 0.96998 * 120.00457 * 358.71182 * 9 8 7 41 41 H 0.97006 * 119.99715 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.46762 * 60.00225 * 13 12 10 43 43 H 1.09000 * 109.46537 * 299.99697 * 13 12 10 44 44 H 0.96999 * 119.99404 * 0.02562 * 16 14 13 45 45 H 0.97000 * 119.99888 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.47308 * 54.65185 * 26 25 7 47 47 H 1.09002 * 109.46980 * 174.65224 * 26 25 7 48 48 H 1.09000 * 109.47441 * 294.65084 * 26 25 7 49 49 H 1.09003 * 109.47419 * 59.99943 * 27 25 7 50 50 H 1.08997 * 109.46950 * 180.02562 * 27 25 7 51 51 H 1.09004 * 109.47617 * 300.00234 * 27 25 7 52 52 H 1.08996 * 109.47277 * 60.00106 * 28 2 1 53 53 H 1.09000 * 109.47535 * 299.99553 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2489 6 6 4.0794 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 6 4.0800 0.7201 1.2500 9 7 3.6991 1.3727 2.5050 10 6 4.0667 2.6478 2.7401 11 8 4.7141 3.2567 1.9105 12 7 3.7167 3.2481 3.8950 13 6 4.1158 4.6344 4.1504 14 6 3.6036 5.0638 5.5010 15 8 2.9682 4.2881 6.1834 16 7 3.8526 6.3096 5.9512 17 6 3.3862 6.7005 7.1797 18 1 2.8197 6.0101 7.7869 19 6 3.6433 7.9847 7.6439 20 7 4.3380 8.8227 6.9077 21 14 3.0084 8.5171 9.3181 22 1 4.0254 8.2065 10.3548 23 1 2.7446 9.9784 9.3057 24 1 1.7507 7.7896 9.6249 25 7 4.0591 -1.4147 2.4491 26 6 3.5056 -2.7727 2.5356 27 6 5.5275 -1.4418 2.4788 28 6 2.0399 -0.7213 1.2492 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6767 -1.7490 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.9334 -1.2361 -2.1386 35 1 3.9338 0.3057 -1.2487 36 1 5.1695 -1.4443 0.0004 37 1 3.7158 -2.4710 0.0001 38 1 3.6414 1.2610 0.4114 39 1 5.1659 0.7212 1.1548 40 1 3.1823 0.8870 3.1668 41 1 3.2005 2.7621 4.5571 42 1 3.6962 5.2810 3.3798 43 1 5.2032 4.7081 4.1343 44 1 4.3611 6.9298 5.4056 45 1 4.5172 9.7193 7.2317 46 1 3.7232 -3.3132 1.6144 47 1 3.9566 -3.2958 3.3789 48 1 2.4264 -2.7169 2.6778 49 1 5.9097 -0.4210 2.4841 50 1 5.8632 -1.9605 3.3767 51 1 5.8993 -1.9643 1.5973 52 1 1.6766 -1.7489 1.2492 53 1 1.6766 -0.2075 2.1393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345116496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:02 Heat of formation + Delta-G solvation = -95.945068 kcal Electronic energy + Delta-G solvation = -30993.352855 eV Core-core repulsion = 26898.522857 eV Total energy + Delta-G solvation = -4094.829998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79263 -40.79116 -39.86024 -37.13270 -36.23441 -35.35226 -35.20886 -33.35646 -33.20148 -31.19393 -29.56587 -28.73915 -27.21810 -26.72122 -25.80819 -24.88608 -22.99328 -21.88974 -21.34353 -21.29206 -20.09214 -19.83086 -19.03957 -17.44475 -17.33441 -17.27225 -16.77542 -16.49355 -16.23256 -15.94514 -15.80343 -15.56239 -15.48050 -15.41713 -15.02572 -14.68584 -14.65793 -14.13776 -13.96229 -13.91191 -13.66960 -13.53065 -13.41401 -13.26208 -13.02404 -12.89351 -12.76744 -12.60347 -12.47472 -12.44357 -12.17809 -12.11767 -11.89902 -11.73315 -11.55674 -11.38445 -11.21367 -11.11704 -11.02037 -10.53573 -10.34578 -10.08473 -9.69408 -9.16755 -8.49654 -5.99757 1.37429 1.43166 1.55553 1.68545 1.91653 2.18539 2.30013 2.89816 3.10503 3.17590 3.42042 3.54482 3.70883 3.87077 4.08471 4.14330 4.16632 4.23566 4.33608 4.35206 4.44003 4.45023 4.48379 4.53686 4.58978 4.62773 4.68638 4.74983 4.79196 4.83495 4.86971 4.96837 5.03295 5.08821 5.09857 5.14128 5.16661 5.27541 5.31672 5.35456 5.40467 5.40654 5.46112 5.54693 5.62043 5.93439 6.03324 6.11472 6.14800 6.49927 7.04939 7.10639 7.44901 7.60318 7.96349 8.67423 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018724 B = 0.002116 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.009345 B =13232.409745 C =13494.694028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.055 0.945 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.138 4.138 7 C 0.110 3.890 8 C 0.154 3.846 9 N -0.717 5.717 10 C 0.703 3.297 11 O -0.636 6.636 12 N -0.725 5.725 13 C 0.143 3.857 14 C 0.435 3.565 15 O -0.623 6.623 16 N -0.560 5.560 17 C -0.336 4.336 18 H 0.086 0.914 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 N -0.544 5.544 26 C 0.019 3.981 27 C 0.020 3.980 28 C -0.097 4.097 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.072 0.928 51 H 0.039 0.961 52 H 0.081 0.919 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 -24.059 -16.247 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.074 0.926 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.177 4.177 7 C 0.020 3.980 8 C 0.029 3.971 9 N -0.373 5.373 10 C 0.403 3.597 11 O -0.519 6.519 12 N -0.383 5.383 13 C 0.014 3.986 14 C 0.222 3.778 15 O -0.511 6.511 16 N -0.196 5.196 17 C -0.465 4.465 18 H 0.104 0.896 19 C -0.212 4.212 20 N -0.557 5.557 21 Si 0.820 3.180 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.194 1.194 25 N -0.267 5.267 26 C -0.128 4.128 27 C -0.128 4.128 28 C -0.134 4.134 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.247 0.753 41 H 0.246 0.754 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.091 0.909 51 H 0.058 0.942 52 H 0.099 0.901 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.622 -23.559 -16.073 28.640 hybrid contribution 0.127 0.212 0.473 0.534 sum -2.495 -23.347 -15.600 28.190 Atomic orbital electron populations 1.21780 0.94533 1.02216 1.01585 1.21177 0.96027 0.99158 0.95005 0.92635 1.21569 0.94931 1.01008 0.97121 1.21545 0.96114 1.00510 0.97620 1.22092 1.00903 1.00336 0.94348 1.21230 0.95946 0.91612 0.89239 1.21363 0.98953 0.91718 0.85047 1.44775 1.59542 1.10733 1.22219 1.15969 0.79850 0.82302 0.81607 1.90865 1.47055 1.66132 1.47833 1.44676 1.60008 1.13843 1.19726 1.20556 1.00690 0.83323 0.94011 1.20412 0.85085 0.83071 0.89250 1.90468 1.46551 1.53678 1.60397 1.41833 1.48356 1.11617 1.17747 1.19735 1.33562 0.98225 0.95011 0.89581 1.26137 0.96543 0.95200 1.03325 1.69686 1.38968 1.07570 1.39489 0.84866 0.78640 0.77566 0.76899 1.19564 1.19635 1.19418 1.62156 1.08400 1.18491 1.37645 1.22508 1.01176 0.88005 1.01136 1.22428 0.87403 1.01575 1.01364 1.21627 0.92189 1.01713 0.97901 0.93374 0.92551 0.91707 0.90965 0.91690 0.90727 0.92728 0.91632 0.90014 0.91516 0.93126 0.75344 0.75387 0.89192 0.89272 0.76725 0.91089 0.94302 0.91141 0.90594 0.92846 0.90939 0.94211 0.90074 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 2 C -0.09 -1.36 2.45 -10.79 -0.03 -1.39 16 3 H 0.06 1.05 6.32 -2.39 -0.02 1.04 16 4 C -0.11 -1.26 5.20 30.59 0.16 -1.10 16 5 C -0.12 -1.47 5.65 30.59 0.17 -1.30 16 6 C -0.14 -1.69 4.05 30.59 0.12 -1.56 16 7 C 0.11 1.66 0.11 3.51 0.00 1.66 16 8 C 0.15 3.33 3.33 86.38 0.29 3.62 16 9 N -0.72 -18.12 5.13 -478.54 -2.45 -20.57 16 10 C 0.70 23.63 8.57 179.05 1.53 25.16 16 11 O -0.64 -25.64 16.34 -3.98 -0.07 -25.71 16 12 N -0.72 -25.28 5.53 -482.29 -2.67 -27.95 16 13 C 0.14 5.48 6.15 85.63 0.53 6.01 16 14 C 0.43 20.55 7.85 87.66 0.69 21.24 16 15 O -0.62 -32.76 15.24 -3.07 -0.05 -32.81 16 16 N -0.56 -28.63 5.29 -306.98 -1.62 -30.25 16 17 C -0.34 -18.73 9.68 84.04 0.81 -17.92 16 18 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 21 Si 1.00 42.15 29.55 68.60 2.03 44.18 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 N -0.54 -8.26 4.28 -898.75 -3.85 -12.10 16 26 C 0.02 0.22 8.77 127.69 1.12 1.34 16 27 C 0.02 0.32 8.81 127.69 1.12 1.44 16 28 C -0.10 -1.35 3.51 30.58 0.11 -1.25 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.84 6.55 -2.39 -0.02 0.82 16 36 H 0.07 0.86 6.40 -2.38 -0.02 0.84 16 37 H 0.08 0.84 6.39 -2.39 -0.02 0.83 16 38 H 0.07 1.57 4.83 -2.39 -0.01 1.56 16 39 H 0.05 1.23 6.70 -2.39 -0.02 1.22 16 40 H 0.41 9.31 7.32 -92.71 -0.68 8.63 16 41 H 0.41 14.03 7.45 -92.70 -0.69 13.34 16 42 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 45 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 46 H 0.04 0.37 6.18 -2.39 -0.01 0.36 16 47 H 0.07 0.76 8.03 -2.39 -0.02 0.74 16 48 H 0.08 0.80 6.56 -2.39 -0.02 0.78 16 49 H 0.05 1.06 6.43 -2.39 -0.02 1.05 16 50 H 0.07 1.06 8.06 -2.39 -0.02 1.04 16 51 H 0.04 0.53 6.30 -2.39 -0.02 0.52 16 52 H 0.08 0.93 6.46 -2.39 -0.02 0.92 16 53 H 0.06 1.02 7.17 -2.39 -0.02 1.00 16 Total: -1.00 -66.45 400.22 -1.78 -68.23 By element: Atomic # 1 Polarization: 52.61 SS G_CDS: -1.15 Total: 51.46 kcal Atomic # 6 Polarization: 26.78 SS G_CDS: 7.76 Total: 34.54 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -10.31 Total: -139.89 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -0.11 Total: -58.52 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -66.45 -1.78 -68.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345116496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.718 kcal (2) G-P(sol) polarization free energy of solvation -66.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds