Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46702 * 2 1 4 4 C 1.52999 * 109.47135 * 119.99877 * 2 1 3 5 5 C 1.52996 * 109.46942 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.47233 * 299.99580 * 5 4 2 7 7 C 1.53009 * 109.46945 * 59.99993 * 6 5 4 8 8 C 1.53006 * 109.46473 * 60.00266 * 7 6 5 9 9 N 1.46495 * 109.47177 * 65.28926 * 8 7 6 10 10 C 1.34779 * 119.99760 * 178.74448 * 9 8 7 11 11 O 1.21583 * 120.00149 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99948 * 179.97438 * 10 9 8 13 13 C 1.46494 * 119.99998 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47404 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99864 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00366 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99958 * 179.97438 * 16 14 13 18 18 H 1.07998 * 120.00166 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99937 * 180.02562 * 17 16 14 20 20 N 1.31416 * 119.99760 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00043 * 180.02562 * 19 17 16 22 22 H 1.48487 * 109.47014 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47004 * 120.00162 * 21 19 17 24 24 H 1.48501 * 109.46827 * 240.00014 * 21 19 17 25 25 N 1.46900 * 109.47177 * 179.97438 * 7 6 5 26 26 C 1.46906 * 110.99880 * 55.53731 * 25 7 6 27 27 C 1.46899 * 110.99895 * 179.49131 * 25 7 6 28 28 C 1.52991 * 109.47203 * 300.00391 * 7 6 5 29 29 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47071 * 300.00089 * 1 2 3 31 31 H 1.08995 * 109.47121 * 60.00093 * 1 2 3 32 32 H 1.08999 * 109.47285 * 59.99890 * 4 2 1 33 33 H 1.09003 * 109.47168 * 299.99974 * 4 2 1 34 34 H 1.09005 * 109.46965 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47714 * 60.00135 * 5 4 2 36 36 H 1.08998 * 109.47837 * 179.97438 * 6 5 4 37 37 H 1.09004 * 109.47802 * 300.00827 * 6 5 4 38 38 H 1.09003 * 109.46733 * 185.28530 * 8 7 6 39 39 H 1.08991 * 109.47078 * 305.28012 * 8 7 6 40 40 H 0.96999 * 120.00598 * 358.73286 * 9 8 7 41 41 H 0.97004 * 119.99932 * 359.97438 * 12 10 9 42 42 H 1.09005 * 109.47250 * 299.99631 * 13 12 10 43 43 H 1.09000 * 109.47294 * 59.99350 * 13 12 10 44 44 H 0.97004 * 119.99666 * 0.02562 * 16 14 13 45 45 H 0.97005 * 119.99943 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.46549 * 54.80226 * 26 25 7 47 47 H 1.09002 * 109.46993 * 174.79559 * 26 25 7 48 48 H 1.08994 * 109.46813 * 294.80216 * 26 25 7 49 49 H 1.09000 * 109.47112 * 60.00321 * 27 25 7 50 50 H 1.09000 * 109.46881 * 180.02562 * 27 25 7 51 51 H 1.08995 * 109.47098 * 299.99894 * 27 25 7 52 52 H 1.09005 * 109.47277 * 180.02562 * 28 7 6 53 53 H 1.09008 * 109.46809 * 299.99304 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7206 1.2495 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 4.0800 0.7223 -1.2486 9 7 5.5395 0.7248 -1.3757 10 6 6.2098 1.8931 -1.4235 11 8 5.6032 2.9450 -1.3617 12 7 7.5526 1.8953 -1.5399 13 6 8.2811 3.1652 -1.5925 14 6 9.7575 2.8924 -1.7221 15 8 10.1615 1.7496 -1.7657 16 7 10.6290 3.9182 -1.7895 17 6 11.9722 3.6700 -1.9069 18 1 12.3319 2.6524 -1.9457 19 6 12.8707 4.7276 -1.9758 20 7 12.4330 5.9658 -1.9281 21 14 14.7009 4.3893 -2.1365 22 1 14.9322 2.9230 -2.1689 23 1 15.2083 4.9980 -3.3924 24 1 15.4167 4.9784 -0.9764 25 7 4.0611 -1.4122 -2.4483 26 6 3.6802 -2.8309 -2.4306 27 6 3.5801 -0.7532 -3.6700 28 6 2.0405 -0.7209 -1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6767 -1.7489 1.2493 33 1 1.6767 -0.2074 2.1392 34 1 3.9334 -1.2349 2.1393 35 1 3.9331 0.3071 1.2497 36 1 5.1705 -1.4408 0.0003 37 1 3.7175 -2.4694 0.0001 38 1 3.6414 1.2627 -2.0875 39 1 3.7957 1.2079 -0.3152 40 1 6.0235 -0.1144 -1.4252 41 1 8.0366 1.0561 -1.5888 42 1 7.9414 3.7437 -2.4516 43 1 8.0949 3.7290 -0.6784 44 1 10.3059 4.8322 -1.7542 45 1 13.0603 6.7042 -1.9766 46 1 2.6007 -2.9157 -2.3054 47 1 3.9747 -3.2980 -3.3704 48 1 4.1825 -3.3316 -1.6029 49 1 3.9353 0.2771 -3.6909 50 1 3.9576 -1.2859 -4.5428 51 1 2.4903 -0.7622 -3.6826 52 1 1.6771 -0.2075 -2.1395 53 1 1.6776 -1.7488 -1.2494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345116521.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -96.090071 kcal Electronic energy + Delta-G solvation = -30890.372018 eV Core-core repulsion = 26795.535732 eV Total energy + Delta-G solvation = -4094.836286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79209 -40.79785 -39.86560 -37.07874 -36.23625 -35.41185 -35.20990 -33.36637 -33.22435 -31.17576 -29.42603 -28.78334 -27.28123 -26.74600 -25.84176 -24.97746 -22.72894 -21.86654 -21.43899 -21.34463 -20.09586 -19.82202 -19.06453 -17.44243 -17.37259 -17.27072 -16.76877 -16.51041 -16.11607 -16.03664 -15.77631 -15.61467 -15.49736 -15.36649 -14.99446 -14.76936 -14.58917 -14.20828 -13.97219 -13.91396 -13.73190 -13.53847 -13.32689 -13.29256 -12.90220 -12.87705 -12.77780 -12.58793 -12.46220 -12.43240 -12.29113 -12.10395 -11.96650 -11.62947 -11.56704 -11.38943 -11.28176 -11.19858 -10.91786 -10.53673 -10.34903 -10.08489 -9.69704 -9.17107 -8.49813 -5.99852 1.36055 1.43277 1.56995 1.68627 1.91393 2.18472 2.29953 2.90455 3.10416 3.17367 3.41876 3.54919 3.68974 3.86903 4.02565 4.11013 4.23487 4.26556 4.30675 4.40120 4.44528 4.45354 4.48312 4.53742 4.57711 4.64442 4.67817 4.73119 4.75985 4.80761 4.87454 4.96753 5.01188 5.06512 5.09579 5.16128 5.18356 5.29309 5.35561 5.36227 5.39503 5.40847 5.41829 5.54076 5.60861 5.93545 6.03470 6.11524 6.14614 6.49782 7.04966 7.10801 7.44853 7.60336 7.96235 8.67424 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.002030 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.531762 B =13788.697033 C =14148.454418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.059 0.941 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.103 4.103 7 C 0.110 3.890 8 C 0.154 3.846 9 N -0.717 5.717 10 C 0.703 3.297 11 O -0.637 6.637 12 N -0.725 5.725 13 C 0.143 3.857 14 C 0.435 3.565 15 O -0.623 6.623 16 N -0.560 5.560 17 C -0.335 4.335 18 H 0.086 0.914 19 C -0.013 4.013 20 N -0.917 5.917 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.271 1.271 25 N -0.543 5.543 26 C 0.019 3.981 27 C 0.020 3.980 28 C -0.130 4.130 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.399 0.601 45 H 0.279 0.721 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.053 0.947 50 H 0.072 0.928 51 H 0.039 0.961 52 H 0.064 0.936 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.492 -16.356 2.838 29.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.078 0.922 4 C -0.146 4.146 5 C -0.161 4.161 6 C -0.141 4.141 7 C 0.020 3.980 8 C 0.029 3.971 9 N -0.373 5.373 10 C 0.403 3.597 11 O -0.519 6.519 12 N -0.382 5.382 13 C 0.014 3.986 14 C 0.222 3.778 15 O -0.511 6.511 16 N -0.196 5.196 17 C -0.464 4.464 18 H 0.104 0.896 19 C -0.213 4.213 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.196 1.196 25 N -0.266 5.266 26 C -0.128 4.128 27 C -0.128 4.128 28 C -0.169 4.169 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.247 0.753 41 H 0.246 0.754 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.056 0.944 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.057 0.943 52 H 0.082 0.918 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.141 -15.957 2.835 29.077 hybrid contribution 0.419 0.109 -0.281 0.516 sum -23.722 -15.848 2.553 28.643 Atomic orbital electron populations 1.21791 0.94313 1.02149 1.01816 1.21148 0.96205 0.99224 0.94678 0.92230 1.21568 0.94714 1.01053 0.97265 1.21595 0.96257 1.00425 0.97801 1.21600 1.00728 0.99592 0.92205 1.21239 0.93499 0.91950 0.91342 1.21358 0.78305 0.96326 1.01067 1.44779 1.07691 1.06428 1.78382 1.15972 0.81250 0.84659 0.77854 1.90866 1.68510 1.32019 1.60500 1.44672 1.05000 1.09715 1.78857 1.20554 0.87801 0.86469 1.03751 1.20415 0.88548 0.85408 0.83436 1.90468 1.80138 1.22452 1.58035 1.41844 1.06380 1.08229 1.63147 1.19770 0.82300 0.94663 1.49691 0.89576 1.26149 1.04984 0.94226 0.95953 1.69694 1.37648 0.98970 1.49381 0.84798 0.76354 0.78473 0.78268 1.19415 1.19662 1.19627 1.62169 1.59649 1.03340 1.01482 1.22510 0.99363 0.87703 1.03255 1.22427 0.98515 0.99492 0.92346 1.22129 0.94373 1.01929 0.98490 0.92027 0.92413 0.92892 0.90987 0.91712 0.90971 0.93119 0.91872 0.90026 0.93205 0.91499 0.75310 0.75370 0.89268 0.89186 0.76719 0.91103 0.94360 0.91140 0.90516 0.92854 0.90924 0.94262 0.91760 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.20 71.98 0.66 -0.86 16 2 C -0.09 -1.19 2.45 -10.79 -0.03 -1.22 16 3 H 0.06 0.97 6.55 -2.39 -0.02 0.95 16 4 C -0.11 -1.27 5.20 30.59 0.16 -1.11 16 5 C -0.12 -1.73 5.65 30.59 0.17 -1.56 16 6 C -0.10 -1.43 4.23 30.59 0.13 -1.30 16 7 C 0.11 1.66 0.11 3.53 0.00 1.66 16 8 C 0.15 3.34 3.34 86.38 0.29 3.63 16 9 N -0.72 -18.07 5.13 -478.54 -2.45 -20.52 16 10 C 0.70 23.59 8.57 179.05 1.53 25.13 16 11 O -0.64 -25.64 16.34 -3.98 -0.06 -25.71 16 12 N -0.72 -25.23 5.53 -482.30 -2.67 -27.90 16 13 C 0.14 5.48 6.15 85.63 0.53 6.00 16 14 C 0.43 20.54 7.85 87.66 0.69 21.23 16 15 O -0.62 -32.76 15.24 -3.07 -0.05 -32.80 16 16 N -0.56 -28.65 5.29 -306.99 -1.62 -30.27 16 17 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 18 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 20 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 21 Si 1.00 42.18 29.55 68.60 2.03 44.21 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 N -0.54 -8.25 4.28 -898.67 -3.85 -12.10 16 26 C 0.02 0.22 8.77 127.69 1.12 1.34 16 27 C 0.02 0.32 8.81 127.69 1.12 1.44 16 28 C -0.13 -1.63 3.33 30.59 0.10 -1.53 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.05 0.92 6.32 -2.39 -0.02 0.90 16 36 H 0.06 1.01 7.17 -2.39 -0.02 0.99 16 37 H 0.08 0.91 6.46 -2.38 -0.02 0.89 16 38 H 0.05 1.22 6.71 -2.39 -0.02 1.20 16 39 H 0.07 1.57 4.83 -2.39 -0.01 1.56 16 40 H 0.41 9.24 7.32 -92.71 -0.68 8.56 16 41 H 0.41 13.99 7.45 -92.71 -0.69 13.30 16 42 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 43 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 45 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 46 H 0.04 0.37 6.19 -2.39 -0.01 0.35 16 47 H 0.07 0.76 8.03 -2.39 -0.02 0.74 16 48 H 0.08 0.80 6.55 -2.39 -0.02 0.78 16 49 H 0.05 1.06 6.43 -2.39 -0.02 1.05 16 50 H 0.07 1.07 8.06 -2.39 -0.02 1.05 16 51 H 0.04 0.53 6.29 -2.39 -0.02 0.52 16 52 H 0.06 0.87 6.39 -2.38 -0.02 0.86 16 53 H 0.08 0.87 6.40 -2.38 -0.02 0.85 16 Total: -1.00 -66.50 400.22 -1.78 -68.28 By element: Atomic # 1 Polarization: 52.12 SS G_CDS: -1.15 Total: 50.97 kcal Atomic # 6 Polarization: 27.04 SS G_CDS: 7.76 Total: 34.80 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -10.31 Total: -139.75 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -0.11 Total: -58.51 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -66.50 -1.78 -68.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345116521.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.813 kcal (2) G-P(sol) polarization free energy of solvation -66.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds