Wall clock time and date at job start Sat Apr 11 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46933 * 2 1 4 4 C 1.46497 * 120.00170 * 269.99955 * 3 2 1 5 5 C 1.52998 * 109.46821 * 293.09973 * 4 3 2 6 6 C 1.34780 * 119.99813 * 89.99744 * 3 2 1 7 7 O 1.21585 * 120.00391 * 340.30854 * 6 3 2 8 8 N 1.34777 * 119.99852 * 160.30962 * 6 3 2 9 9 C 1.46961 * 120.59638 * 164.09602 * 8 6 3 10 10 C 1.53379 * 108.63382 * 235.24982 * 9 8 6 11 11 N 1.46966 * 108.63317 * 310.57054 * 10 9 8 12 12 C 1.34771 * 120.59390 * 235.20978 * 11 10 9 13 13 O 1.21584 * 120.00357 * 5.26020 * 12 11 10 14 14 N 1.34780 * 119.99877 * 184.99688 * 12 11 10 15 15 C 1.46496 * 120.00168 * 175.28400 * 14 12 11 16 16 C 1.52998 * 109.47308 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47309 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47428 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99464 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00166 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00272 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00074 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46829 * 59.99784 * 22 20 18 24 24 H 1.48496 * 109.47382 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47289 * 300.00224 * 22 20 18 26 26 C 1.46968 * 118.80681 * 55.48340 * 11 10 9 27 27 C 1.46968 * 120.59119 * 344.11712 * 8 6 3 28 28 H 1.08997 * 109.47441 * 300.00065 * 1 2 3 29 29 H 1.08995 * 109.47209 * 60.00066 * 1 2 3 30 30 H 1.09000 * 109.46822 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47441 * 239.99935 * 2 1 3 32 32 H 1.08992 * 109.46853 * 119.99562 * 2 1 3 33 33 H 1.09006 * 109.46881 * 53.09364 * 4 3 2 34 34 H 1.08999 * 109.47547 * 173.09577 * 4 3 2 35 35 H 1.08997 * 109.47122 * 299.99377 * 5 4 3 36 36 H 1.09004 * 109.47350 * 59.99987 * 5 4 3 37 37 H 1.09007 * 109.46797 * 180.02562 * 5 4 3 38 38 H 1.08994 * 109.61259 * 115.50454 * 9 8 6 39 39 H 1.09006 * 109.75113 * 355.07441 * 9 8 6 40 40 H 1.08999 * 109.60434 * 190.83222 * 10 9 8 41 41 H 1.08996 * 109.75289 * 70.40184 * 10 9 8 42 42 H 0.97001 * 119.99904 * 355.28624 * 14 12 11 43 43 H 1.09004 * 109.47192 * 299.99718 * 15 14 12 44 44 H 1.09003 * 109.47110 * 59.99459 * 15 14 12 45 45 H 1.09001 * 109.47238 * 299.99739 * 16 15 14 46 46 H 1.09003 * 109.47443 * 59.99704 * 16 15 14 47 47 H 1.09004 * 109.47145 * 299.99730 * 17 16 15 48 48 H 1.09002 * 109.47660 * 59.99618 * 17 16 15 49 49 H 0.96995 * 120.00668 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.61209 * 64.26440 * 26 11 10 51 51 H 1.09007 * 109.60115 * 184.77567 * 26 11 10 52 52 H 1.09005 * 109.61055 * 244.49479 * 27 8 6 53 53 H 1.08997 * 109.61364 * 4.83311 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.4351 1.4080 -1.9933 6 6 2.2429 2.0166 1.1673 7 8 1.7235 1.6120 2.1894 8 7 3.0432 3.1005 1.2014 9 6 3.0303 4.0036 2.3607 10 6 2.7433 5.4279 1.8693 11 7 3.6442 5.7281 0.7477 12 6 4.4439 6.8124 0.7815 13 8 4.4952 7.4989 1.7836 14 7 5.1907 7.1327 -0.2938 15 6 5.9804 8.3666 -0.2959 16 6 6.7298 8.4902 -1.6240 17 6 7.5551 9.7785 -1.6260 18 6 8.2928 9.9006 -2.9344 19 1 8.1842 9.1355 -3.6889 20 6 9.1071 10.9884 -3.1679 21 7 9.2397 11.9198 -2.2489 22 14 10.0221 11.1394 -4.7894 23 1 9.0453 11.1759 -5.9073 24 1 10.8230 12.3898 -4.7914 25 1 10.9249 9.9725 -4.9589 26 6 3.6529 4.8280 -0.4141 27 6 3.9440 3.4007 0.0797 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.3701 2.0132 -1.8919 34 1 2.5010 3.1174 -1.0733 35 1 4.3274 1.4667 -1.3701 36 1 3.1965 0.3625 -2.1887 37 1 3.6171 1.9221 -2.9371 38 1 4.0006 3.9763 2.8565 39 1 2.2534 3.6943 3.0600 40 1 2.9184 6.1363 2.6789 41 1 1.7079 5.5011 1.5367 42 1 5.2053 6.5462 -1.0663 43 1 5.3172 9.2226 -0.1716 44 1 6.6976 8.3404 0.5245 45 1 7.3931 7.6342 -1.7480 46 1 6.0130 8.5162 -2.4448 47 1 6.8921 10.6348 -1.5019 48 1 8.2720 9.7521 -0.8054 49 1 9.8123 12.6853 -2.4132 50 1 2.6808 4.8566 -0.9064 51 1 4.4290 5.1405 -1.1129 52 1 4.9794 3.3305 0.4131 53 1 3.7711 2.6903 -0.7287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352361706.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:19 Heat of formation + Delta-G solvation = -22.424701 kcal Electronic energy + Delta-G solvation = -30702.928930 eV Core-core repulsion = 26611.287014 eV Total energy + Delta-G solvation = -4091.641916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25497 -41.07969 -38.43860 -37.71109 -36.96137 -35.39967 -35.06953 -33.62360 -32.82998 -31.67502 -30.93429 -28.95174 -27.85595 -25.43280 -24.78226 -24.72779 -24.09361 -22.79993 -22.28825 -21.31625 -20.12471 -19.09480 -18.49077 -18.16276 -17.92396 -17.38734 -17.03825 -16.74866 -16.49046 -16.30714 -15.90320 -15.70988 -15.56034 -15.30975 -15.17361 -14.63858 -14.53179 -14.31014 -14.20357 -13.76949 -13.70070 -13.44281 -13.42795 -13.22722 -12.96729 -12.73018 -12.69136 -12.63436 -12.49221 -12.40590 -12.33368 -12.10945 -11.88205 -11.76175 -11.63615 -11.56709 -11.27304 -11.12289 -11.05508 -10.51918 -10.44455 -10.10081 -9.70077 -9.23472 -8.16425 -6.27910 1.32340 1.44116 1.46972 1.54737 1.69224 1.91221 2.08438 2.44133 2.65785 2.85864 3.17357 3.66429 3.74783 3.79227 4.03018 4.10327 4.10754 4.16665 4.22842 4.22952 4.27391 4.37647 4.42886 4.45652 4.51546 4.57947 4.59064 4.64439 4.73280 4.80513 4.87202 4.90029 4.98717 5.00265 5.02220 5.06618 5.19851 5.30199 5.33254 5.37886 5.44999 5.47251 5.56041 5.64070 5.74394 5.79761 5.87257 5.90443 6.25043 6.78118 6.88631 6.92905 7.41078 7.41581 7.49699 8.95343 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.002003 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.807717 B =13978.563174 C =15245.362217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 N -0.629 5.629 4 C 0.070 3.930 5 C -0.185 4.185 6 C 0.706 3.294 7 O -0.626 6.626 8 N -0.626 5.626 9 C 0.124 3.876 10 C 0.120 3.880 11 N -0.625 5.625 12 C 0.701 3.299 13 O -0.635 6.635 14 N -0.727 5.727 15 C 0.149 3.851 16 C -0.099 4.099 17 C 0.022 3.978 18 C -0.539 4.539 19 H 0.069 0.931 20 C -0.005 4.005 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.264 1.264 24 H -0.289 1.289 25 H -0.265 1.265 26 C 0.089 3.911 27 C 0.039 3.961 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.410 0.590 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.071 0.929 47 H -0.009 1.009 48 H -0.009 1.009 49 H 0.262 0.738 50 H 0.097 0.903 51 H 0.112 0.888 52 H 0.068 0.932 53 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.082 -27.420 -2.267 32.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.006 3.994 3 N -0.366 5.366 4 C -0.051 4.051 5 C -0.242 4.242 6 C 0.409 3.591 7 O -0.506 6.506 8 N -0.363 5.363 9 C -0.001 4.001 10 C -0.004 4.004 11 N -0.363 5.363 12 C 0.403 3.597 13 O -0.517 6.517 14 N -0.385 5.385 15 C 0.024 3.976 16 C -0.137 4.137 17 C -0.015 4.015 18 C -0.577 4.577 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.189 1.189 24 H -0.215 1.215 25 H -0.190 1.190 26 C -0.034 4.034 27 C -0.083 4.083 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.249 0.751 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.010 0.990 48 H 0.009 0.991 49 H 0.071 0.929 50 H 0.115 0.885 51 H 0.129 0.871 52 H 0.086 0.914 53 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.247 -26.988 -0.986 32.043 hybrid contribution 0.685 0.551 -0.352 0.947 sum -16.562 -26.437 -1.338 31.225 Atomic orbital electron populations 1.22074 0.95943 1.02613 1.01411 1.21386 0.94488 0.80381 1.03153 1.47248 1.69512 1.15414 1.04400 1.22502 1.00277 0.98301 0.84065 1.22412 0.97250 1.02895 1.01671 1.16138 0.79128 0.79885 0.83940 1.90874 1.56714 1.68029 1.34985 1.47180 1.41631 1.26608 1.20855 1.21756 1.02975 0.87599 0.87771 1.21853 0.92992 0.95847 0.89718 1.47178 1.42362 1.25512 1.21236 1.16053 0.79165 0.81218 0.83289 1.90890 1.71628 1.55431 1.33721 1.45162 1.49116 1.26005 1.18234 1.21097 0.93084 0.84931 0.98484 1.21579 0.98284 0.99041 0.94782 1.18950 0.94001 0.92807 0.95779 1.21655 1.26971 1.06859 1.02209 0.91261 1.26040 0.97941 0.95564 1.00733 1.70110 1.39811 1.11498 1.36165 0.85469 0.78591 0.77451 0.79329 1.18922 1.21482 1.18967 1.22485 1.04657 0.88675 0.87582 1.23856 0.93848 0.98476 0.92122 0.94895 0.91752 0.90415 0.87509 0.92324 0.89291 0.87620 0.91636 0.90795 0.88469 0.91715 0.88645 0.89181 0.90113 0.75064 0.93524 0.93701 0.91182 0.91044 0.99010 0.99093 0.92920 0.88512 0.87052 0.91397 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.24 71.98 0.74 -1.09 16 2 C 0.13 1.42 5.91 86.38 0.51 1.93 16 3 N -0.63 -8.09 2.52 -882.17 -2.23 -10.31 16 4 C 0.07 0.39 5.56 86.38 0.48 0.87 16 5 C -0.18 -0.38 9.13 71.98 0.66 0.27 16 6 C 0.71 14.39 7.82 179.05 1.40 15.79 16 7 O -0.63 -18.14 15.70 -3.98 -0.06 -18.20 16 8 N -0.63 -10.77 2.86 -835.12 -2.39 -13.16 16 9 C 0.12 2.40 6.54 86.42 0.56 2.96 16 10 C 0.12 2.39 6.60 86.42 0.57 2.96 16 11 N -0.63 -12.77 2.94 -835.13 -2.46 -15.22 16 12 C 0.70 20.45 8.29 179.06 1.49 21.94 16 13 O -0.64 -24.87 15.76 -3.98 -0.06 -24.94 16 14 N -0.73 -19.10 5.47 -478.54 -2.62 -21.71 16 15 C 0.15 5.11 5.68 86.38 0.49 5.60 16 16 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 17 C 0.02 1.13 4.97 29.85 0.15 1.28 16 18 C -0.54 -29.22 9.11 25.60 0.23 -28.98 16 19 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 20 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 21 N -0.94 -56.56 13.29 21.45 0.28 -56.28 16 22 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 26 C 0.09 0.99 6.14 86.56 0.53 1.53 16 27 C 0.04 0.43 5.49 86.56 0.47 0.90 16 28 H 0.03 0.58 8.03 -2.39 -0.02 0.56 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.51 6.81 -2.39 -0.02 0.50 16 32 H 0.06 0.88 7.76 -2.39 -0.02 0.87 16 33 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.11 0.59 2.92 -2.39 -0.01 0.59 16 35 H 0.07 0.24 6.67 -2.39 -0.02 0.22 16 36 H 0.07 0.12 6.96 -2.38 -0.02 0.11 16 37 H 0.10 -0.11 8.14 -2.38 -0.02 -0.13 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 2.00 7.16 -2.38 -0.02 1.99 16 40 H 0.09 2.16 6.99 -2.39 -0.02 2.14 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 42 H 0.41 7.55 5.94 -92.71 -0.55 7.00 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 48 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 50 H 0.10 0.74 6.93 -2.39 -0.02 0.73 16 51 H 0.11 0.85 5.61 -2.38 -0.01 0.83 16 52 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 53 H 0.17 1.09 1.03 -18.09 -0.02 1.07 16 Total: -1.00 -80.67 406.30 1.75 -78.91 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.35 Total: 13.39 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 8.91 Total: 22.70 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -9.40 Total: -116.68 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.13 Total: -43.14 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -80.67 1.75 -78.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352361706.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.488 kcal (2) G-P(sol) polarization free energy of solvation -80.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds