Wall clock time and date at job start Sat Apr 11 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.46983 * 2 1 4 4 C 1.46500 * 119.99832 * 270.00263 * 3 2 1 5 5 C 1.50705 * 109.46715 * 269.99498 * 4 3 2 6 6 H 1.08002 * 120.00331 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99467 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99621 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00446 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47316 * 89.99865 * 9 7 5 11 11 H 1.48505 * 109.47229 * 209.99820 * 9 7 5 12 12 H 1.48504 * 109.47171 * 329.99806 * 9 7 5 13 13 C 1.34778 * 119.99895 * 89.99512 * 3 2 1 14 14 O 1.21281 * 119.99463 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00100 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47167 * 184.99342 * 15 13 3 17 17 C 1.46961 * 110.99723 * 66.84417 * 16 15 13 18 18 C 1.53048 * 109.36239 * 183.19041 * 17 16 15 19 19 N 1.46958 * 109.36462 * 301.59997 * 18 17 16 20 20 C 1.46903 * 111.00207 * 183.18895 * 19 18 17 21 21 C 1.53001 * 109.47034 * 177.00772 * 20 19 18 22 22 C 1.53002 * 109.47015 * 57.00641 * 20 19 18 23 23 C 1.50704 * 109.46817 * 297.00995 * 20 19 18 24 24 N 1.34780 * 119.99336 * 182.40145 * 23 20 19 25 25 O 1.21280 * 120.00261 * 2.40000 * 23 20 19 26 26 C 1.46957 * 110.88368 * 59.31828 * 19 18 17 27 27 C 1.46948 * 111.00152 * 190.64522 * 16 15 13 28 28 H 1.09003 * 109.46946 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47439 * 299.99762 * 1 2 3 30 30 H 1.08995 * 109.47264 * 60.00299 * 1 2 3 31 31 H 1.08996 * 109.47439 * 240.00237 * 2 1 3 32 32 H 1.08995 * 109.47264 * 119.99701 * 2 1 3 33 33 H 1.09002 * 109.47305 * 29.99503 * 4 3 2 34 34 H 1.08998 * 109.47254 * 150.00238 * 4 3 2 35 35 H 0.96994 * 119.99671 * 180.02562 * 8 7 5 36 36 H 1.08995 * 109.47580 * 64.98950 * 15 13 3 37 37 H 1.09000 * 109.46803 * 304.99370 * 15 13 3 38 38 H 1.08996 * 109.48747 * 63.22572 * 17 16 15 39 39 H 1.08997 * 109.49111 * 303.15715 * 17 16 15 40 40 H 1.08997 * 109.49308 * 181.63433 * 18 17 16 41 41 H 1.09001 * 109.49142 * 61.56569 * 18 17 16 42 42 H 1.09002 * 109.46494 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47120 * 299.99543 * 21 20 19 44 44 H 1.09003 * 109.47144 * 60.00253 * 21 20 19 45 45 H 1.08993 * 109.47363 * 300.00202 * 22 20 19 46 46 H 1.08999 * 109.46743 * 60.00519 * 22 20 19 47 47 H 1.09003 * 109.47088 * 179.97438 * 22 20 19 48 48 H 0.96998 * 119.99505 * 174.97527 * 24 23 20 49 49 H 0.96999 * 120.00568 * 354.69593 * 24 23 20 50 50 H 1.09005 * 109.48438 * 60.64629 * 26 19 18 51 51 H 1.08997 * 109.49246 * 180.71285 * 26 19 18 52 52 H 1.09003 * 109.49224 * 296.77951 * 27 16 15 53 53 H 1.09000 * 109.49026 * 56.84223 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3427 1.2304 -1.0961 7 6 4.1490 2.3898 -2.8779 8 7 5.3910 2.1828 -3.2578 9 14 3.0126 3.4351 -3.9293 10 1 3.1159 4.8554 -3.5083 11 1 3.4056 3.3119 -5.3561 12 1 1.6129 2.9691 -3.7593 13 6 2.2428 2.0167 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9921 1.3061 2.4723 16 7 2.1949 2.2420 3.5863 17 6 1.1725 3.2976 3.5799 18 6 1.4647 4.2939 4.7044 19 7 1.4781 3.5853 5.9919 20 6 1.6809 4.5213 7.1058 21 6 1.6145 3.7591 8.4308 22 6 0.5881 5.5917 7.0779 23 6 3.0307 5.1778 6.9709 24 7 3.4558 6.0439 7.9120 25 8 3.7344 4.9267 6.0156 26 6 2.5005 2.5297 5.9982 27 6 2.2083 1.5335 4.8736 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6877 -2.0284 34 1 2.0954 3.1411 -1.1384 35 1 5.7170 2.5732 -4.0837 36 1 2.6845 0.4699 2.5697 37 1 0.9679 0.9338 2.4923 38 1 0.1895 2.8527 3.7346 39 1 1.1907 3.8158 2.6212 40 1 0.6913 5.0618 4.7201 41 1 2.4359 4.7588 4.5351 42 1 1.7655 4.4535 9.2573 43 1 0.6383 3.2843 8.5284 44 1 2.3931 2.9965 8.4507 45 1 0.6353 6.1347 6.1340 46 1 -0.3882 5.1169 7.1755 47 1 0.7383 6.2860 7.9047 48 1 4.3525 6.4105 7.8640 49 1 2.8636 6.3038 8.6350 50 1 3.4835 2.9746 5.8435 51 1 2.4823 2.0115 6.9569 52 1 1.2371 1.0686 5.0430 53 1 2.9817 0.7656 4.8580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430706858.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:30 Heat of formation + Delta-G solvation = -38.018898 kcal Electronic energy + Delta-G solvation = -31820.001666 eV Core-core repulsion = 27727.683536 eV Total energy + Delta-G solvation = -4092.318131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01386 -39.35998 -37.94461 -36.00719 -35.17671 -34.24592 -32.67370 -31.85022 -31.06718 -30.27405 -28.68455 -27.76513 -27.00759 -24.57727 -23.40544 -23.14834 -22.89964 -21.82177 -20.07598 -19.65126 -18.23977 -17.87490 -16.84891 -16.69555 -16.42272 -16.14000 -15.51635 -15.25715 -14.96853 -14.90202 -14.48093 -14.41725 -14.18729 -14.13359 -13.87632 -13.41906 -13.19333 -13.03733 -12.79064 -12.62901 -12.54852 -12.41466 -12.11714 -12.06459 -11.85916 -11.75599 -11.61552 -11.44081 -11.28058 -11.00552 -10.91707 -10.68359 -10.62361 -10.51936 -10.43595 -10.40597 -10.07544 -9.80187 -9.45199 -8.85151 -8.51645 -8.25517 -7.96332 -7.59302 -6.01317 -3.99242 2.38055 3.24915 3.33995 3.39825 3.41853 3.48770 3.65015 3.70318 4.25826 4.46007 4.48065 4.48460 4.58935 4.89879 5.03333 5.14845 5.21228 5.27001 5.30102 5.31435 5.32743 5.38547 5.41307 5.43982 5.53694 5.60742 5.63995 5.66280 5.69784 5.73406 5.77929 5.78393 5.93966 6.02275 6.16643 6.19488 6.24996 6.30214 6.44205 6.58267 6.75070 6.80373 6.93715 7.01399 7.08121 7.22218 7.32045 7.47889 7.69662 8.03989 8.38183 8.55827 9.02644 9.15268 9.59470 11.12362 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016140 B = 0.002766 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.366785 B =10120.582078 C =10931.366457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.519 6.519 15 C 0.040 3.960 16 N -0.516 5.516 17 C 0.062 3.938 18 C 0.040 3.960 19 N -0.506 5.506 20 C 0.089 3.911 21 C -0.138 4.138 22 C -0.141 4.141 23 C 0.488 3.512 24 N -0.857 5.857 25 O -0.519 6.519 26 C 0.038 3.962 27 C 0.064 3.936 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.029 0.971 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.398 0.602 49 H 0.398 0.602 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.036 0.964 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.076 1.287 26.245 29.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.395 6.395 15 C -0.091 4.091 16 N -0.241 5.241 17 C -0.065 4.065 18 C -0.088 4.088 19 N -0.231 5.231 20 C -0.006 4.006 21 C -0.196 4.196 22 C -0.198 4.198 23 C 0.271 3.729 24 N -0.422 5.422 25 O -0.394 6.394 26 C -0.090 4.090 27 C -0.065 4.065 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.229 0.771 49 H 0.226 0.774 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.054 0.946 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.416 1.644 25.371 28.294 hybrid contribution -0.282 0.702 -0.323 0.823 sum -12.699 2.345 25.047 28.180 Atomic orbital electron populations 1.22233 0.96947 1.01454 1.02103 1.21405 0.93233 0.84070 1.02976 1.47952 1.64728 1.13341 1.06982 1.19600 0.97182 0.93315 0.80137 1.21356 0.95403 1.32671 1.06933 0.90776 1.24864 0.94981 0.95848 0.97398 1.69906 1.15151 1.45158 1.23558 0.86851 0.81463 0.81666 0.79688 1.19950 1.21164 1.19119 1.20191 0.78547 0.87165 0.84687 1.90661 1.44105 1.17944 1.86763 1.22030 1.00849 0.95537 0.90712 1.61706 1.49067 1.12093 1.01243 1.22201 0.91486 0.93091 0.99768 1.22480 1.02968 0.96094 0.87222 1.62682 1.46813 1.11135 1.02428 1.21279 0.91205 0.93563 0.94505 1.21898 1.03835 1.00313 0.93509 1.21923 0.98401 0.96988 1.02524 1.22093 0.89695 0.79025 0.82049 1.44087 1.19303 1.48720 1.30066 1.90788 1.57275 1.61416 1.29951 1.22473 0.96040 0.92743 0.97744 1.22099 1.00177 0.95603 0.88592 0.92067 0.93152 0.92249 0.89785 0.91593 0.95435 0.94729 0.92658 0.88436 0.92735 0.95262 0.88705 0.90867 0.90314 0.91878 0.90397 0.91811 0.91580 0.90336 0.91890 0.77142 0.77387 0.90616 0.90825 0.94598 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.19 37.16 0.38 -1.82 16 2 C 0.11 1.72 5.86 -4.04 -0.02 1.70 16 3 N -0.60 -12.67 2.46 -175.06 -0.43 -13.10 16 4 C 0.22 5.51 4.23 -5.19 -0.02 5.49 16 5 C -0.53 -15.59 9.94 -34.44 -0.34 -15.93 16 6 H 0.07 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.55 13.96 55.43 0.77 -27.78 16 9 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 10 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.51 10.89 7.26 -10.99 -0.08 10.81 16 14 O -0.52 -13.47 14.24 5.56 0.08 -13.39 16 15 C 0.04 0.65 3.92 -4.98 -0.02 0.63 16 16 N -0.52 -8.53 4.40 -235.92 -1.04 -9.57 16 17 C 0.06 0.99 5.27 -3.77 -0.02 0.97 16 18 C 0.04 0.57 4.88 -3.77 -0.02 0.55 16 19 N -0.51 -5.92 4.53 -220.15 -1.00 -6.92 16 20 C 0.09 0.79 0.57 -132.75 -0.08 0.71 16 21 C -0.14 -0.86 8.10 37.16 0.30 -0.56 16 22 C -0.14 -0.97 8.06 37.16 0.30 -0.67 16 23 C 0.49 5.24 6.15 -10.98 -0.07 5.18 16 24 N -0.86 -5.60 8.65 31.22 0.27 -5.33 16 25 O -0.52 -8.32 12.41 5.56 0.07 -8.25 16 26 C 0.04 0.47 4.90 -3.77 -0.02 0.45 16 27 C 0.06 0.83 5.61 -3.77 -0.02 0.81 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.63 7.13 -51.93 -0.37 0.26 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 33 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 34 H 0.03 0.94 6.85 -51.93 -0.36 0.58 16 35 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.10 1.45 7.53 -51.93 -0.39 1.06 16 37 H 0.05 0.76 6.89 -51.93 -0.36 0.40 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 1.78 6.09 -51.93 -0.32 1.46 16 40 H 0.07 0.91 6.07 -51.93 -0.32 0.60 16 41 H 0.08 1.41 5.60 -51.93 -0.29 1.12 16 42 H 0.06 0.24 7.55 -51.93 -0.39 -0.15 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.44 6.32 -51.93 -0.33 0.12 16 45 H 0.07 0.55 6.29 -51.93 -0.33 0.22 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.28 7.59 -51.93 -0.39 -0.12 16 48 H 0.40 2.47 8.93 -40.82 -0.36 2.10 16 49 H 0.40 1.30 7.69 -40.82 -0.31 0.99 16 50 H 0.08 1.19 5.59 -51.93 -0.29 0.90 16 51 H 0.07 0.74 6.12 -51.93 -0.32 0.43 16 52 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 53 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -38.57 396.57 -8.59 -47.16 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.80 Total: 3.29 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 0.17 Total: 10.35 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -1.42 Total: -62.70 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.15 Total: -21.65 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.57 -8.59 -47.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430706858.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.141 kcal (2) G-P(sol) polarization free energy of solvation -38.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds