Wall clock time and date at job start Sat Apr 11 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46961 * 2 1 4 4 C 1.46496 * 120.00352 * 270.00003 * 3 2 1 5 5 C 1.50704 * 109.47056 * 270.00510 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99692 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00450 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99776 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47239 * 89.99207 * 9 7 5 11 11 H 1.48493 * 109.47018 * 209.99837 * 9 7 5 12 12 H 1.48505 * 109.46823 * 329.99385 * 9 7 5 13 13 C 1.34776 * 119.99801 * 90.00424 * 3 2 1 14 14 O 1.21282 * 119.99940 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99978 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.47109 * 180.02562 * 15 13 3 17 17 C 1.46848 * 110.99750 * 66.04607 * 16 15 13 18 18 C 1.53045 * 109.51853 * 185.84278 * 17 16 15 19 19 C 1.53121 * 109.27659 * 300.81897 * 18 17 16 20 20 C 1.53118 * 109.16297 * 57.65627 * 19 18 17 21 21 H 1.09001 * 109.50177 * 62.28453 * 20 19 18 22 22 N 1.46490 * 109.50341 * 182.36614 * 20 19 18 23 23 C 1.34777 * 119.99963 * 274.99820 * 22 20 19 24 24 O 1.21585 * 120.00103 * 0.02562 * 23 22 20 25 25 N 1.34779 * 119.99722 * 180.02562 * 23 22 20 26 26 C 1.46509 * 119.99692 * 180.02562 * 25 23 22 27 27 C 1.46498 * 120.00395 * 0.02562 * 25 23 22 28 28 C 1.46846 * 110.99938 * 190.25388 * 16 15 13 29 29 H 1.09000 * 109.46892 * 299.99690 * 1 2 3 30 30 H 1.08998 * 109.46794 * 60.00269 * 1 2 3 31 31 H 1.09009 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46892 * 240.00310 * 2 1 3 33 33 H 1.09002 * 109.46990 * 120.00456 * 2 1 3 34 34 H 1.09002 * 109.47248 * 30.00186 * 4 3 2 35 35 H 1.09000 * 109.47481 * 150.00438 * 4 3 2 36 36 H 0.96994 * 120.00664 * 180.02562 * 8 7 5 37 37 H 1.08992 * 109.46894 * 60.00096 * 15 13 3 38 38 H 1.09004 * 109.47113 * 300.00247 * 15 13 3 39 39 H 1.08996 * 109.46281 * 305.85079 * 17 16 15 40 40 H 1.08994 * 109.46340 * 65.83545 * 17 16 15 41 41 H 1.08996 * 109.50687 * 60.76000 * 18 17 16 42 42 H 1.09003 * 109.49858 * 180.84171 * 18 17 16 43 43 H 1.08997 * 109.52232 * 177.56507 * 19 18 17 44 44 H 1.09010 * 109.52073 * 297.74946 * 19 18 17 45 45 H 0.97003 * 120.00203 * 95.00276 * 22 20 19 46 46 H 1.08997 * 109.46778 * 90.00138 * 26 25 23 47 47 H 1.09003 * 109.46680 * 210.00089 * 26 25 23 48 48 H 1.08995 * 109.46757 * 330.00135 * 26 25 23 49 49 H 1.08994 * 109.47391 * 59.99661 * 27 25 23 50 50 H 1.09001 * 109.47457 * 180.02562 * 27 25 23 51 51 H 1.08999 * 109.46772 * 299.99716 * 27 25 23 52 52 H 1.08995 * 109.46359 * 294.17653 * 28 16 15 53 53 H 1.09001 * 109.45880 * 54.14768 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3906 -2.8774 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0976 -3.4164 10 1 5.9776 0.8769 -4.2595 11 1 6.3928 3.2653 -4.1987 12 1 6.7737 1.9177 -2.2190 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5889 17 6 1.3829 3.3452 3.6268 18 6 1.8305 4.3327 4.7069 19 6 1.8517 3.6228 6.0634 20 6 2.7863 2.4126 5.9828 21 1 3.8005 2.7497 5.7686 22 7 2.7687 1.6951 7.2598 23 6 3.5760 2.0882 8.2648 24 8 4.3187 3.0387 8.1117 25 7 3.5602 1.4277 9.4396 26 6 4.4374 1.8555 10.5323 27 6 2.6658 0.2822 9.6239 28 6 2.3110 1.4808 4.8656 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6878 -2.0283 35 1 2.0956 3.1411 -1.1383 36 1 3.6754 3.5173 -4.4433 37 1 2.6212 0.4185 2.5301 38 1 0.9433 1.0123 2.5299 39 1 1.3805 3.8437 2.6575 40 1 0.3783 2.9888 3.8544 41 1 2.8296 4.7000 4.4727 42 1 1.1343 5.1706 4.7448 43 1 2.2114 4.3104 6.8288 44 1 0.8450 3.2895 6.3159 45 1 2.1760 0.9370 7.3821 46 1 3.9193 2.5912 11.1473 47 1 4.7030 0.9930 11.1437 48 1 5.3424 2.3002 10.1186 49 1 2.9068 -0.4885 8.8918 50 1 2.7919 -0.1192 10.6295 51 1 1.6328 0.6022 9.4878 52 1 1.3020 1.1332 5.0873 53 1 2.9827 0.6251 4.7961 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451982270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:32 Heat of formation + Delta-G solvation = -76.132119 kcal Electronic energy + Delta-G solvation = -30818.482713 eV Core-core repulsion = 26724.511869 eV Total energy + Delta-G solvation = -4093.970844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47927 -40.86261 -39.38747 -36.92531 -36.51233 -35.84387 -34.89815 -33.76864 -31.60060 -30.84102 -29.80403 -28.67057 -27.92746 -26.72330 -25.10397 -24.29496 -23.82539 -23.40670 -21.25361 -20.83978 -19.86228 -18.97212 -18.58862 -17.88244 -17.72024 -17.13805 -16.87715 -16.60448 -16.44325 -16.04852 -15.62712 -15.57882 -15.09711 -14.98146 -14.73346 -14.58194 -14.42466 -14.34808 -14.18549 -13.93423 -13.56344 -13.49045 -13.45241 -13.39053 -13.22367 -13.06674 -12.80578 -12.76530 -12.65563 -12.47853 -12.33554 -12.15125 -11.93157 -11.85454 -11.78615 -11.66249 -11.55411 -11.28501 -10.63026 -10.42747 -10.20919 -9.51980 -9.39875 -9.18725 -8.21058 -6.35338 1.35310 1.39104 1.49156 1.58681 1.92648 2.10724 2.27953 2.42107 2.87084 3.08121 3.19059 3.70815 3.73067 3.86735 4.02300 4.12494 4.23548 4.24140 4.29405 4.31929 4.43107 4.44974 4.48361 4.52551 4.58062 4.59427 4.66853 4.70101 4.77586 4.88370 4.92171 4.94244 4.96562 4.98739 5.03424 5.04542 5.08794 5.23178 5.25009 5.35003 5.42124 5.48114 5.52516 5.61035 5.88907 5.93192 5.99305 6.09576 6.16782 6.73491 6.89082 6.95273 7.31270 7.55137 7.60265 8.85560 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.002316 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.096339 B =12089.375411 C =12627.853748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.275 1.275 13 C 0.494 3.506 14 O -0.579 6.579 15 C 0.056 3.944 16 N -0.545 5.545 17 C 0.056 3.944 18 C -0.108 4.108 19 C -0.117 4.117 20 C 0.171 3.829 21 H 0.057 0.943 22 N -0.722 5.722 23 C 0.695 3.305 24 O -0.640 6.640 25 N -0.639 5.639 26 C 0.100 3.900 27 C 0.071 3.929 28 C 0.062 3.938 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.021 0.979 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.412 0.588 46 H 0.054 0.946 47 H 0.102 0.898 48 H 0.050 0.950 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.070 0.930 52 H 0.071 0.929 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 -13.476 28.007 32.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.200 1.200 13 C 0.282 3.718 14 O -0.459 6.459 15 C -0.074 4.074 16 N -0.271 5.271 17 C -0.071 4.071 18 C -0.146 4.146 19 C -0.155 4.155 20 C 0.064 3.936 21 H 0.075 0.925 22 N -0.378 5.378 23 C 0.396 3.604 24 O -0.521 6.521 25 N -0.376 5.376 26 C -0.043 4.043 27 C -0.071 4.071 28 C -0.066 4.066 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.039 0.961 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.250 0.750 46 H 0.073 0.927 47 H 0.120 0.880 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.122 0.878 51 H 0.089 0.911 52 H 0.089 0.911 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.069 -11.963 27.673 31.209 hybrid contribution 0.125 0.061 -0.825 0.837 sum -7.944 -11.902 26.848 30.423 Atomic orbital electron populations 1.22149 0.94601 1.03454 1.01567 1.21747 0.95253 0.81363 1.03926 1.48288 1.64288 1.15163 1.06103 1.18632 0.95034 0.91420 0.80579 1.21717 0.97998 1.31708 1.06304 0.93038 1.25848 1.02265 0.94580 0.96581 1.70045 1.37717 1.34323 1.14805 0.85446 0.79202 0.78206 0.78143 1.18619 1.20771 1.20010 1.21246 0.77403 0.86763 0.86365 1.90629 1.46978 1.20599 1.87702 1.21950 1.02868 0.95499 0.87082 1.61237 1.53774 1.09496 1.02569 1.22152 0.93153 0.92011 0.99802 1.21449 1.01460 0.97969 0.93757 1.21873 1.00164 0.96900 0.96600 1.20553 0.99626 0.91782 0.81594 0.92450 1.44891 1.44129 1.36418 1.12364 1.16159 0.80751 0.82245 0.81230 1.90912 1.46088 1.32340 1.82770 1.47068 1.44479 1.33903 1.12193 1.21644 0.93303 1.01365 0.87987 1.22038 0.93250 0.86940 1.04874 1.22216 1.01910 0.95613 0.86864 0.92084 0.94571 0.88574 0.91221 0.87964 0.96138 0.98808 0.92498 0.85948 0.89009 0.92211 0.93008 0.93748 0.90076 0.93093 0.89802 0.74994 0.92720 0.88001 0.93143 0.91101 0.87829 0.91111 0.91124 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.24 71.98 0.74 -2.91 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.61 -25.37 2.46 -826.15 -2.03 -27.39 16 4 C 0.27 14.48 5.16 85.64 0.44 14.92 16 5 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.35 5.46 84.66 0.46 0.81 16 8 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 9 Si 0.97 46.17 29.54 68.60 2.03 48.19 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C 0.49 20.36 7.35 87.66 0.64 21.01 16 14 O -0.58 -30.48 13.93 -3.04 -0.04 -30.53 16 15 C 0.06 1.50 4.00 85.56 0.34 1.85 16 16 N -0.55 -15.13 4.39 -900.91 -3.96 -19.09 16 17 C 0.06 1.59 5.11 86.33 0.44 2.03 16 18 C -0.11 -2.88 6.09 30.65 0.19 -2.69 16 19 C -0.12 -2.60 5.58 30.67 0.17 -2.43 16 20 C 0.17 3.82 2.61 45.05 0.12 3.94 16 21 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 22 N -0.72 -12.42 4.99 -457.58 -2.28 -14.70 16 23 C 0.70 16.05 8.25 179.05 1.48 17.52 16 24 O -0.64 -21.83 15.59 -3.98 -0.06 -21.90 16 25 N -0.64 -9.48 3.27 -890.18 -2.91 -12.39 16 26 C 0.10 1.29 10.41 127.77 1.33 2.62 16 27 C 0.07 0.33 9.48 127.77 1.21 1.54 16 28 C 0.06 1.15 4.93 86.33 0.43 1.58 16 29 H 0.06 1.25 7.22 -2.39 -0.02 1.24 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 33 H 0.10 2.15 6.44 -2.39 -0.02 2.13 16 34 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 35 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.12 2.67 7.24 -2.39 -0.02 2.65 16 38 H 0.09 1.83 7.16 -2.38 -0.02 1.81 16 39 H 0.06 2.23 5.80 -2.39 -0.01 2.22 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.41 3.84 6.95 -92.71 -0.64 3.19 16 46 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.59 7.92 -2.39 -0.02 0.57 16 48 H 0.05 0.94 7.42 -2.39 -0.02 0.92 16 49 H 0.07 0.21 7.96 -2.39 -0.02 0.19 16 50 H 0.10 0.05 7.79 -2.39 -0.02 0.04 16 51 H 0.07 0.20 7.96 -2.39 -0.02 0.18 16 52 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.09 1.52 8.01 -2.39 -0.02 1.50 16 Total: -1.00 -88.89 417.18 0.00 -88.88 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.24 Total: 14.24 kcal Atomic # 6 Polarization: 23.00 SS G_CDS: 8.74 Total: 31.74 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -10.90 Total: -130.63 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -0.10 Total: -52.42 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -88.89 0.00 -88.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451982270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.751 kcal (2) G-P(sol) polarization free energy of solvation -88.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds