Wall clock time and date at job start Sat Apr 11 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46742 * 2 1 4 4 C 1.50703 * 109.47348 * 240.00465 * 2 1 3 5 5 O 1.21277 * 119.99804 * 268.97426 * 4 2 1 6 6 N 1.34773 * 119.99911 * 88.96757 * 4 2 1 7 7 C 1.46503 * 120.00366 * 354.59926 * 6 4 2 8 8 C 1.46497 * 119.99715 * 174.58823 * 6 4 2 9 9 C 1.50707 * 109.46699 * 90.00490 * 8 6 4 10 10 H 1.07997 * 119.99629 * 0.02562 * 9 8 6 11 11 C 1.37879 * 120.00022 * 179.97438 * 9 8 6 12 12 N 1.31521 * 119.99772 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99994 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.46785 * 90.00285 * 13 11 9 15 15 H 1.48497 * 109.47096 * 210.00238 * 13 11 9 16 16 H 1.48502 * 109.47162 * 330.00266 * 13 11 9 17 17 N 1.46899 * 109.47200 * 120.00144 * 2 1 3 18 18 C 1.46850 * 110.99915 * 174.78284 * 17 2 1 19 19 C 1.53032 * 109.52520 * 174.15796 * 18 17 2 20 20 C 1.53129 * 109.27726 * 59.18102 * 19 18 17 21 21 C 1.53119 * 109.15970 * 302.34585 * 20 19 18 22 22 H 1.09005 * 109.50453 * 297.67819 * 21 20 19 23 23 N 1.46492 * 109.50413 * 177.59434 * 21 20 19 24 24 C 1.34779 * 120.00276 * 85.00014 * 23 21 20 25 25 O 1.21583 * 119.99526 * 0.02562 * 24 23 21 26 26 N 1.34776 * 120.00108 * 179.97438 * 24 23 21 27 27 C 1.46497 * 119.99549 * 179.97438 * 26 24 23 28 28 C 1.46498 * 120.00140 * 0.02562 * 26 24 23 29 29 C 1.46841 * 111.00095 * 50.57285 * 17 2 1 30 30 H 1.08998 * 109.47404 * 301.38668 * 1 2 3 31 31 H 1.08998 * 109.47476 * 61.39209 * 1 2 3 32 32 H 1.09000 * 109.46535 * 181.39449 * 1 2 3 33 33 H 1.09001 * 109.46970 * 94.49337 * 7 6 4 34 34 H 1.08997 * 109.47029 * 214.49394 * 7 6 4 35 35 H 1.09006 * 109.46724 * 334.49771 * 7 6 4 36 36 H 1.09001 * 109.47415 * 210.00230 * 8 6 4 37 37 H 1.08996 * 109.47548 * 330.00706 * 8 6 4 38 38 H 0.96994 * 119.99367 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.46371 * 294.17642 * 18 17 2 40 40 H 1.09005 * 109.46341 * 54.15330 * 18 17 2 41 41 H 1.08996 * 109.50567 * 179.11794 * 19 18 17 42 42 H 1.09002 * 109.50627 * 299.24214 * 19 18 17 43 43 H 1.08999 * 109.52015 * 62.24763 * 20 19 18 44 44 H 1.08999 * 109.52376 * 182.37551 * 20 19 18 45 45 H 0.97002 * 119.99892 * 264.99642 * 23 21 20 46 46 H 1.09002 * 109.47390 * 90.00860 * 27 26 24 47 47 H 1.09007 * 109.46924 * 210.00280 * 27 26 24 48 48 H 1.09002 * 109.47739 * 330.00577 * 27 26 24 49 49 H 1.08994 * 109.47607 * 59.99289 * 28 26 24 50 50 H 1.08999 * 109.46843 * 179.97438 * 28 26 24 51 51 H 1.09004 * 109.46479 * 299.99416 * 28 26 24 52 52 H 1.08997 * 109.46075 * 305.85607 * 29 17 2 53 53 H 1.09000 * 109.46250 * 65.82516 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.2522 -1.9025 -1.1952 6 7 2.2372 -0.0207 -2.3702 7 6 1.8606 1.3929 -2.4489 8 6 2.8367 -0.6847 -3.5303 9 6 1.7486 -1.2826 -4.3847 10 1 0.7141 -1.1779 -4.0928 11 6 2.0738 -1.9622 -5.5394 12 7 3.3336 -2.0891 -5.8951 13 14 0.7251 -2.7026 -6.5987 14 1 0.2830 -1.7049 -7.6060 15 1 1.2457 -3.9083 -7.2917 16 1 -0.4256 -3.0830 -5.7406 17 7 2.0197 -0.6925 1.1994 18 6 3.4823 -0.8210 1.1726 19 6 3.9681 -1.4132 2.4974 20 6 3.3203 -2.7850 2.7056 21 6 1.7971 -2.6305 2.6811 22 1 1.4833 -1.9875 3.5035 23 7 1.1696 -3.9466 2.8223 24 6 0.9671 -4.4687 4.0482 25 8 1.3048 -3.8470 5.0370 26 7 0.3892 -5.6794 4.1781 27 6 0.1697 -6.2470 5.5106 28 6 -0.0182 -6.4282 2.9866 29 6 1.3743 -2.0027 1.3509 30 1 -0.3634 0.5352 0.8773 31 1 -0.3634 0.4920 -0.9022 32 1 -0.3632 -1.0274 0.0250 33 1 2.7261 2.0130 -2.2155 34 1 1.5117 1.6204 -3.4562 35 1 1.0638 1.5969 -1.7335 36 1 3.3991 0.0431 -4.1151 37 1 3.5071 -1.4742 -3.1909 38 1 3.5624 -2.5675 -6.7072 39 1 3.7743 -1.4772 0.3527 40 1 3.9307 0.1620 1.0283 41 1 5.0522 -1.5230 2.4712 42 1 3.6885 -0.7507 3.3166 43 1 3.6308 -3.4594 1.9076 44 1 3.6306 -3.1921 3.6679 45 1 0.8998 -4.4424 2.0334 46 1 -0.8101 -5.9423 5.8785 47 1 0.2144 -7.3347 5.4541 48 1 0.9413 -5.8865 6.1909 49 1 0.8539 -6.6183 2.3611 50 1 -0.4625 -7.3767 3.2880 51 1 -0.7489 -5.8466 2.4244 52 1 0.2915 -1.8781 1.3360 53 1 1.6761 -2.6534 0.5302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451986711.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:41 Heat of formation + Delta-G solvation = -70.005888 kcal Electronic energy + Delta-G solvation = -31752.136372 eV Core-core repulsion = 27658.431181 eV Total energy + Delta-G solvation = -4093.705191 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79061 -41.10084 -39.17745 -36.72667 -36.47585 -36.03346 -34.83956 -34.30843 -31.08042 -30.91508 -29.59418 -28.72849 -27.43832 -26.78290 -26.11610 -25.12714 -23.63582 -22.84332 -21.22789 -21.04584 -19.79957 -19.05797 -18.68199 -17.95869 -17.80633 -17.28130 -16.90215 -16.72142 -16.22758 -15.91388 -15.89537 -15.60591 -15.09540 -15.00825 -14.81943 -14.59787 -14.46435 -14.06371 -14.01233 -13.78507 -13.65215 -13.54986 -13.45378 -13.44287 -13.19148 -13.12405 -12.83760 -12.80153 -12.66565 -12.44918 -12.40206 -12.30236 -12.14677 -11.85171 -11.70544 -11.66729 -11.50626 -11.26591 -11.00152 -10.65599 -10.20900 -9.55766 -9.41374 -9.14503 -8.23367 -6.38013 1.35230 1.37571 1.47917 1.60066 1.80156 2.07679 2.31059 2.46264 2.73139 3.06080 3.09230 3.66660 3.76047 3.88696 3.94082 4.03966 4.19013 4.21678 4.26093 4.37737 4.39819 4.44750 4.46904 4.49229 4.61894 4.70458 4.73284 4.78232 4.80983 4.84343 4.85309 4.89231 4.92472 4.97283 4.97992 5.04249 5.07471 5.13935 5.20745 5.22160 5.34252 5.42645 5.52089 5.56285 5.82838 5.87331 5.90713 5.98937 6.05518 6.69139 6.80046 6.87617 7.27815 7.48207 7.49543 8.83470 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.003021 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.832701 B = 9267.627652 C =10584.301532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.129 0.871 4 C 0.473 3.527 5 O -0.583 6.583 6 N -0.609 5.609 7 C 0.073 3.927 8 C 0.262 3.738 9 C -0.536 4.536 10 H 0.052 0.948 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.264 1.264 15 H -0.282 1.282 16 H -0.272 1.272 17 N -0.495 5.495 18 C 0.042 3.958 19 C -0.101 4.101 20 C -0.125 4.125 21 C 0.178 3.822 22 H 0.082 0.918 23 N -0.731 5.731 24 C 0.699 3.301 25 O -0.631 6.631 26 N -0.640 5.640 27 C 0.101 3.899 28 C 0.072 3.928 29 C 0.035 3.965 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.019 0.981 37 H -0.006 1.006 38 H 0.266 0.734 39 H 0.019 0.981 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.404 0.596 46 H 0.057 0.943 47 H 0.099 0.901 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.108 0.892 51 H 0.065 0.935 52 H 0.088 0.912 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -0.523 18.415 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.042 4.042 3 H 0.147 0.853 4 C 0.261 3.739 5 O -0.464 6.464 6 N -0.340 5.340 7 C -0.069 4.069 8 C 0.140 3.860 9 C -0.575 4.575 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.791 3.209 14 H -0.189 1.189 15 H -0.207 1.207 16 H -0.196 1.196 17 N -0.218 5.218 18 C -0.086 4.086 19 C -0.139 4.139 20 C -0.164 4.164 21 C 0.072 3.928 22 H 0.100 0.900 23 N -0.387 5.387 24 C 0.400 3.600 25 O -0.513 6.513 26 N -0.378 5.378 27 C -0.042 4.042 28 C -0.071 4.071 29 C -0.094 4.094 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.037 0.963 37 H 0.012 0.988 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.240 0.760 46 H 0.075 0.925 47 H 0.117 0.883 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.127 0.873 51 H 0.083 0.917 52 H 0.106 0.894 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.014 -0.475 19.411 20.644 hybrid contribution 0.033 -1.404 -2.221 2.628 sum -6.981 -1.879 17.190 18.648 Atomic orbital electron populations 1.21891 0.90585 1.02927 1.04353 1.22077 0.98497 0.99292 0.84307 0.85333 1.22516 0.77884 0.87636 0.85911 1.90563 1.54039 1.17009 1.84830 1.48328 1.60388 1.12516 1.12800 1.21999 1.01367 0.79729 1.03765 1.18691 0.92866 0.91679 0.82789 1.21659 0.93453 1.35181 1.07213 0.92954 1.25861 0.97977 0.96348 0.99053 1.70056 1.18483 1.43105 1.25350 0.85430 0.78780 0.78161 0.78536 1.18936 1.20745 1.19627 1.62482 1.05939 1.19513 1.33880 1.22273 0.87628 1.01130 0.97579 1.21446 1.00187 0.95457 0.96795 1.21910 0.95365 0.98121 1.00994 1.20596 0.91869 0.82609 0.97682 0.90016 1.45142 1.65670 1.21063 1.06783 1.16058 0.78609 0.81806 0.83483 1.90864 1.59723 1.62418 1.38254 1.47080 1.63791 1.17475 1.09417 1.21667 1.01349 0.99377 0.81771 1.21976 1.00537 0.97914 0.86644 1.22519 0.99932 0.90910 0.96006 0.88096 0.90748 0.93013 0.91255 0.91644 0.88449 0.96267 0.98787 0.92480 0.96254 0.89478 0.90146 0.89969 0.93359 0.92158 0.76020 0.92470 0.88251 0.92507 0.92117 0.87350 0.91686 0.89418 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.46 71.98 0.61 -2.58 16 2 C 0.07 1.92 2.09 44.17 0.09 2.01 16 3 H 0.13 2.83 6.87 -2.39 -0.02 2.81 16 4 C 0.47 18.47 5.82 87.66 0.51 18.98 16 5 O -0.58 -28.04 12.13 -3.02 -0.04 -28.08 16 6 N -0.61 -24.88 2.86 -851.12 -2.43 -27.31 16 7 C 0.07 2.09 9.88 127.77 1.26 3.36 16 8 C 0.26 13.90 5.14 85.64 0.44 14.34 16 9 C -0.54 -30.47 9.39 25.60 0.24 -30.23 16 10 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 11 C 0.01 0.36 5.46 84.65 0.46 0.82 16 12 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 13 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 N -0.49 -13.53 4.72 -875.51 -4.13 -17.66 16 18 C 0.04 1.19 4.91 86.32 0.42 1.61 16 19 C -0.10 -2.48 6.09 30.65 0.19 -2.29 16 20 C -0.12 -3.43 5.58 30.68 0.17 -3.26 16 21 C 0.18 4.85 2.62 45.05 0.12 4.97 16 22 H 0.08 2.43 7.58 -2.38 -0.02 2.42 16 23 N -0.73 -18.33 4.99 -457.57 -2.28 -20.62 16 24 C 0.70 19.04 8.25 179.05 1.48 20.51 16 25 O -0.63 -21.91 15.59 -3.98 -0.06 -21.97 16 26 N -0.64 -12.64 3.27 -890.19 -2.91 -15.56 16 27 C 0.10 1.57 10.41 127.77 1.33 2.90 16 28 C 0.07 0.90 9.48 127.77 1.21 2.11 16 29 C 0.03 0.99 4.10 86.33 0.35 1.35 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.60 6.95 -2.39 -0.02 1.59 16 32 H 0.05 1.33 6.10 -2.39 -0.01 1.32 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.98 8.11 -2.39 -0.02 1.96 16 35 H 0.10 2.06 5.20 -2.38 -0.01 2.04 16 36 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 37 H -0.01 -0.37 7.50 -2.39 -0.02 -0.39 16 38 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.02 0.71 6.22 -2.39 -0.01 0.69 16 40 H 0.09 2.19 8.12 -2.38 -0.02 2.17 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.40 8.88 6.95 -92.71 -0.64 8.24 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.10 0.88 7.92 -2.38 -0.02 0.86 16 48 H 0.06 1.12 7.42 -2.39 -0.02 1.10 16 49 H 0.06 0.79 7.96 -2.39 -0.02 0.77 16 50 H 0.11 0.77 7.79 -2.39 -0.02 0.75 16 51 H 0.06 0.78 7.96 -2.39 -0.02 0.76 16 52 H 0.09 2.32 5.80 -2.39 -0.01 2.31 16 53 H 0.05 1.90 5.57 -2.39 -0.01 1.89 16 Total: -1.00 -79.29 406.57 -0.40 -79.69 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.26 Total: 26.22 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: 8.89 Total: 34.61 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -11.48 Total: -136.82 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.10 Total: -50.04 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -79.29 -0.40 -79.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451986711.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.687 kcal (2) G-P(sol) polarization free energy of solvation -79.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds