Wall clock time and date at job start Sat Apr 11 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 109.47408 * 2 1 4 4 N 1.46900 * 109.47082 * 120.00220 * 2 1 3 5 5 C 1.46903 * 111.00131 * 275.00245 * 4 2 1 6 6 C 1.52998 * 109.47302 * 180.02562 * 5 4 2 7 7 H 1.08992 * 109.47135 * 59.99463 * 6 5 4 8 8 O 1.42897 * 109.46674 * 299.99470 * 6 5 4 9 9 C 1.53004 * 109.46799 * 179.97438 * 6 5 4 10 10 N 1.46898 * 109.46619 * 184.99872 * 9 6 5 11 11 C 1.46901 * 111.00443 * 66.04574 * 10 9 6 12 12 C 1.46906 * 110.99820 * 189.99887 * 10 9 6 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 9 14 14 H 1.08007 * 119.99780 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00506 * 180.02562 * 13 12 10 16 16 N 1.31515 * 119.99253 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47238 * 59.99702 * 17 15 13 19 19 H 1.48503 * 109.47230 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47102 * 299.99648 * 17 15 13 21 21 C 1.50698 * 109.47276 * 239.99828 * 2 1 3 22 22 N 1.31138 * 126.55174 * 104.99904 * 21 2 1 23 23 C 1.34492 * 105.61402 * 180.02562 * 22 21 2 24 24 C 1.50698 * 126.28508 * 179.97438 * 23 22 21 25 25 C 1.52993 * 109.47323 * 59.99780 * 24 23 22 26 26 C 1.53002 * 109.47096 * 180.02562 * 24 23 22 27 27 C 1.53001 * 109.47139 * 299.99556 * 24 23 22 28 28 N 1.29951 * 107.42573 * 359.97438 * 23 22 21 29 29 O 1.21298 * 110.24975 * 359.70984 * 28 23 22 30 30 H 1.09004 * 109.47611 * 300.00075 * 1 2 3 31 31 H 1.09001 * 109.47263 * 59.99554 * 1 2 3 32 32 H 1.09003 * 109.47623 * 179.97438 * 1 2 3 33 33 H 1.00904 * 111.00509 * 151.04084 * 4 2 1 34 34 H 1.08996 * 109.47237 * 59.99345 * 5 4 2 35 35 H 1.09009 * 109.46499 * 299.99967 * 5 4 2 36 36 H 0.96701 * 114.00549 * 300.00026 * 8 6 5 37 37 H 1.08994 * 109.47270 * 64.99737 * 9 6 5 38 38 H 1.08999 * 109.47017 * 304.99614 * 9 6 5 39 39 H 1.09002 * 109.47401 * 183.95136 * 11 10 9 40 40 H 1.09001 * 109.46874 * 63.95149 * 11 10 9 41 41 H 1.09004 * 109.46970 * 303.95282 * 11 10 9 42 42 H 1.08997 * 109.46995 * 289.99871 * 12 10 9 43 43 H 1.09001 * 109.46848 * 49.99877 * 12 10 9 44 44 H 0.96999 * 119.99606 * 179.97438 * 16 15 13 45 45 H 1.09001 * 109.47388 * 60.00125 * 25 24 23 46 46 H 1.09000 * 109.47157 * 180.02562 * 25 24 23 47 47 H 1.09006 * 109.47228 * 299.99757 * 25 24 23 48 48 H 1.09001 * 109.47363 * 59.99783 * 26 24 23 49 49 H 1.09000 * 109.46911 * 179.97438 * 26 24 23 50 50 H 1.09001 * 109.46895 * 299.99434 * 26 24 23 51 51 H 1.08999 * 109.47263 * 60.00066 * 27 24 23 52 52 H 1.09000 * 109.47489 * 179.97438 * 27 24 23 53 53 H 1.09005 * 109.47298 * 300.00669 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0823 0.2225 2.3470 6 6 2.5961 -0.5330 3.5742 7 1 3.5915 -0.9264 3.3683 8 8 1.7097 -1.6130 3.8741 9 6 2.6620 0.4203 4.7692 10 7 3.2668 -0.2721 5.9149 11 6 4.6744 -0.5982 5.6499 12 6 3.1330 0.5246 7.1419 13 6 3.5374 -0.3102 8.3296 14 1 3.8618 -1.3305 8.1871 15 6 3.4932 0.2284 9.5980 16 7 3.0987 1.4709 9.7713 17 14 3.9952 -0.8062 11.0701 18 1 5.4071 -1.2386 10.9129 19 1 3.8598 -0.0009 12.3104 20 1 3.1182 -2.0014 11.1572 21 6 2.0323 -0.7104 -1.2304 22 7 2.5497 -0.1519 -2.2982 23 6 2.8506 -1.1668 -3.1278 24 6 3.4713 -1.0464 -4.4957 25 6 4.8372 -0.3672 -4.3780 26 6 3.6450 -2.4407 -5.1014 27 6 2.5613 -0.2093 -5.3968 28 7 2.5078 -2.2703 -2.5331 29 8 2.0412 -2.0304 -1.4395 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 2.9172 -1.1207 1.0287 34 1 1.0870 0.6162 2.5525 35 1 2.7588 1.0461 2.1182 36 1 0.8037 -1.3361 4.0681 37 1 1.6550 0.7448 5.0310 38 1 3.2673 1.2884 4.5084 39 1 5.0780 -1.1714 6.4846 40 1 5.2449 0.3232 5.5323 41 1 4.7449 -1.1883 4.7361 42 1 3.7773 1.4014 7.0778 43 1 2.0968 0.8428 7.2573 44 1 3.0672 1.8498 10.6637 45 1 5.4855 -0.9636 -3.7361 46 1 5.2859 -0.2797 -5.3675 47 1 4.7130 0.6262 -3.9467 48 1 2.6718 -2.9242 -5.1853 49 1 4.0936 -2.3535 -6.0910 50 1 4.2932 -3.0375 -4.4596 51 1 2.4371 0.7840 -4.9655 52 1 3.0105 -0.1218 -6.3861 53 1 1.5882 -0.6932 -5.4806 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570391204.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:55 Heat of formation + Delta-G solvation = -12.436919 kcal Electronic energy + Delta-G solvation = -29754.558352 eV Core-core repulsion = 25663.349539 eV Total energy + Delta-G solvation = -4091.208813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.70735 -39.68461 -38.75627 -38.11975 -36.79462 -35.76707 -34.59724 -33.33667 -31.70028 -30.25398 -28.90301 -28.37948 -28.30068 -27.36656 -25.87376 -25.61883 -24.61794 -22.83709 -22.53142 -21.76408 -20.35830 -19.17959 -18.54615 -18.50998 -17.66100 -17.16486 -16.81503 -16.47830 -16.18174 -16.11579 -15.88433 -15.61191 -15.23489 -15.13102 -14.98537 -14.73053 -14.09386 -13.83977 -13.70188 -13.64936 -13.48894 -13.37374 -13.21232 -13.15903 -12.89500 -12.80967 -12.73832 -12.63637 -12.56036 -12.52574 -12.49419 -12.43952 -12.39195 -12.21629 -11.99469 -11.95775 -11.82579 -11.57851 -11.37983 -11.05147 -10.61901 -10.60058 -9.57758 -8.93006 -8.19610 -6.29124 0.02368 1.10142 1.41793 1.44750 1.52703 1.70390 2.29035 2.41491 2.76054 3.04690 3.12878 3.39421 3.59674 3.78339 3.82836 3.91017 3.91129 4.01984 4.03910 4.19346 4.21725 4.33351 4.45485 4.52522 4.54916 4.62367 4.64327 4.67095 4.73187 4.74145 4.74384 4.79572 4.83047 4.85797 4.85978 4.89895 4.98071 5.07799 5.16447 5.17313 5.19580 5.24106 5.27844 5.28746 5.33781 5.65744 5.76180 6.06904 6.10709 6.34038 6.67100 6.86771 7.08128 7.11912 7.40444 8.90894 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026184 B = 0.001687 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.089719 B =16595.794882 C =16877.026255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.185 3.815 3 H 0.102 0.898 4 N -0.672 5.672 5 C 0.037 3.963 6 C 0.128 3.872 7 H 0.088 0.912 8 O -0.553 6.553 9 C 0.024 3.976 10 N -0.541 5.541 11 C 0.040 3.960 12 C 0.208 3.792 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.184 3.816 22 N -0.488 5.488 23 C 0.175 3.825 24 C 0.018 3.982 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.133 4.133 28 N -0.402 5.402 29 O 0.078 5.922 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.345 0.655 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.380 0.620 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.010 0.990 41 H 0.076 0.924 42 H -0.039 1.039 43 H 0.006 0.994 44 H 0.264 0.736 45 H 0.047 0.953 46 H 0.095 0.905 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.094 0.906 50 H 0.050 0.950 51 H 0.060 0.940 52 H 0.094 0.906 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 -1.133 -32.046 32.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 H 0.120 0.880 4 N -0.305 5.305 5 C -0.093 4.093 6 C 0.068 3.932 7 H 0.105 0.895 8 O -0.359 6.359 9 C -0.105 4.105 10 N -0.265 5.265 11 C -0.108 4.108 12 C 0.082 3.918 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.037 4.037 22 N -0.222 5.222 23 C -0.098 4.098 24 C 0.016 3.984 25 C -0.192 4.192 26 C -0.193 4.193 27 C -0.191 4.191 28 N -0.111 5.111 29 O 0.022 5.978 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.095 0.905 42 H -0.021 1.021 43 H 0.025 0.975 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.113 0.887 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.113 0.887 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.113 0.887 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.200 -2.507 -32.382 32.554 hybrid contribution 0.879 1.403 1.182 2.034 sum -1.321 -1.104 -31.200 31.248 Atomic orbital electron populations 1.21860 0.90308 1.03686 1.03781 1.20252 0.97886 0.94635 0.79862 0.88040 1.60530 1.34405 1.32810 1.02775 1.22695 1.03150 0.93665 0.89762 1.21722 0.94160 0.87043 0.90259 0.89467 1.86577 1.23901 1.33503 1.91897 1.22841 1.00118 0.95508 0.92074 1.61922 1.16394 1.45381 1.02791 1.22223 0.88382 0.98939 1.01251 1.19393 0.94449 0.90571 0.87425 1.21456 1.43921 0.99081 0.91875 0.92229 1.25883 0.95360 0.96254 1.02090 1.70067 1.48790 1.15161 1.23359 0.85463 0.79012 0.78510 0.77788 1.19420 1.20726 1.19436 1.29246 0.95027 0.81219 0.98176 1.71848 1.17166 1.31041 1.02178 1.26385 0.99579 0.83203 1.00626 1.19264 0.96115 0.98857 0.84188 1.21841 0.93327 1.00159 1.03849 1.21820 1.02244 0.93353 1.01911 1.21836 0.98397 0.99105 0.99727 1.74672 1.16791 1.24779 0.94822 1.85335 1.58475 1.27246 1.26787 0.89079 0.91136 0.91688 0.83675 0.88321 0.92702 0.77183 0.90854 0.94810 0.92897 0.97166 0.90502 1.02089 0.97543 0.92702 0.93390 0.88655 0.92197 0.92887 0.88698 0.93099 0.92132 0.88703 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.40 71.98 0.68 -1.05 16 2 C 0.18 2.74 3.16 44.17 0.14 2.88 16 3 H 0.10 1.30 7.80 -2.39 -0.02 1.28 16 4 N -0.67 -11.47 6.17 -495.46 -3.06 -14.52 16 5 C 0.04 0.62 5.15 86.30 0.44 1.07 16 6 C 0.13 3.18 3.13 30.60 0.10 3.27 16 7 H 0.09 2.27 6.26 -2.39 -0.01 2.25 16 8 O -0.55 -15.65 13.15 -148.98 -1.96 -17.61 16 9 C 0.02 0.75 4.60 86.30 0.40 1.15 16 10 N -0.54 -22.95 4.70 -927.04 -4.36 -27.31 16 11 C 0.04 1.56 9.17 127.69 1.17 2.73 16 12 C 0.21 11.02 4.72 85.55 0.40 11.43 16 13 C -0.53 -30.06 8.52 25.60 0.22 -29.85 16 14 H 0.06 3.39 7.10 -2.91 -0.02 3.36 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 17 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.18 3.61 7.00 88.38 0.62 4.23 16 22 N -0.49 -10.28 11.55 -303.18 -3.50 -13.78 16 23 C 0.18 3.66 6.40 138.46 0.89 4.55 16 24 C 0.02 0.26 0.99 -52.93 -0.05 0.20 16 25 C -0.13 -1.63 8.46 71.98 0.61 -1.03 16 26 C -0.14 -1.73 7.97 71.98 0.57 -1.16 16 27 C -0.13 -1.51 8.45 71.98 0.61 -0.90 16 28 N -0.40 -9.64 11.47 -60.31 -0.69 -10.33 16 29 O 0.08 1.81 11.31 74.83 0.85 2.65 16 30 H 0.09 0.94 7.45 -2.38 -0.02 0.92 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.34 6.34 8.35 -89.69 -0.75 5.59 16 34 H 0.10 1.42 7.44 -2.39 -0.02 1.40 16 35 H 0.05 0.83 8.06 -2.38 -0.02 0.81 16 36 H 0.38 8.66 9.05 -74.06 -0.67 7.99 16 37 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 38 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 39 H 0.05 2.24 6.86 -2.39 -0.02 2.22 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.08 2.47 6.21 -2.38 -0.01 2.45 16 42 H -0.04 -2.21 8.12 -2.39 -0.02 -2.23 16 43 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 44 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -70.56 427.76 -3.68 -74.24 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.52 Total: 17.65 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 7.25 Total: -1.89 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -11.32 Total: -121.69 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.11 Total: -14.96 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.56 -3.68 -74.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570391204.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.799 kcal (2) G-P(sol) polarization free energy of solvation -70.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds