Wall clock time and date at job start Sat Apr 11 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47034 * 2 1 4 4 N 1.46898 * 109.46885 * 240.00128 * 2 1 3 5 5 C 1.46902 * 110.99999 * 85.00044 * 4 2 1 6 6 C 1.52999 * 109.47211 * 179.97438 * 5 4 2 7 7 H 1.08996 * 109.47391 * 304.99935 * 6 5 4 8 8 O 1.42898 * 109.46842 * 65.00303 * 6 5 4 9 9 C 1.52998 * 109.46948 * 184.99808 * 6 5 4 10 10 N 1.46898 * 109.47253 * 180.02562 * 9 6 5 11 11 C 1.46902 * 111.00021 * 293.95749 * 10 9 6 12 12 C 1.46898 * 111.00311 * 170.00584 * 10 9 6 13 13 C 1.50702 * 109.47099 * 189.99868 * 12 10 9 14 14 H 1.07999 * 119.99886 * 0.02562 * 13 12 10 15 15 C 1.37883 * 119.99976 * 179.97438 * 13 12 10 16 16 N 1.31514 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99768 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47260 * 90.00458 * 17 15 13 19 19 H 1.48505 * 109.46761 * 209.99799 * 17 15 13 20 20 H 1.48495 * 109.47129 * 330.00131 * 17 15 13 21 21 C 1.50703 * 109.46872 * 120.00579 * 2 1 3 22 22 N 1.31134 * 126.54839 * 254.96797 * 21 2 1 23 23 C 1.34490 * 105.61260 * 180.02562 * 22 21 2 24 24 C 1.50707 * 126.28527 * 180.02562 * 23 22 21 25 25 C 1.52996 * 109.47258 * 179.97438 * 24 23 22 26 26 C 1.53004 * 109.46812 * 299.97498 * 24 23 22 27 27 C 1.52998 * 109.46942 * 59.96932 * 24 23 22 28 28 N 1.29938 * 107.42847 * 359.97438 * 23 22 21 29 29 O 1.21303 * 110.25257 * 359.97438 * 28 23 22 30 30 H 1.09001 * 109.47392 * 59.99893 * 1 2 3 31 31 H 1.09004 * 109.46930 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46978 * 299.99450 * 1 2 3 33 33 H 1.00902 * 111.00399 * 208.95168 * 4 2 1 34 34 H 1.08997 * 109.47279 * 299.99856 * 5 4 2 35 35 H 1.09001 * 109.47150 * 59.99995 * 5 4 2 36 36 H 0.96705 * 114.00213 * 60.00183 * 8 6 5 37 37 H 1.09004 * 109.47728 * 300.00452 * 9 6 5 38 38 H 1.08998 * 109.47016 * 60.00503 * 9 6 5 39 39 H 1.09000 * 109.47337 * 59.99559 * 11 10 9 40 40 H 1.09000 * 109.47291 * 179.97438 * 11 10 9 41 41 H 1.09003 * 109.47059 * 299.99718 * 11 10 9 42 42 H 1.09002 * 109.47138 * 309.99496 * 12 10 9 43 43 H 1.08996 * 109.47537 * 69.99738 * 12 10 9 44 44 H 0.96999 * 119.99652 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.46901 * 59.99394 * 25 24 23 46 46 H 1.08991 * 109.47492 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.46985 * 300.00179 * 25 24 23 48 48 H 1.09001 * 109.47551 * 59.99912 * 26 24 23 49 49 H 1.09003 * 109.46838 * 179.97438 * 26 24 23 50 50 H 1.08997 * 109.47004 * 299.99785 * 26 24 23 51 51 H 1.08999 * 109.46833 * 60.00720 * 27 24 23 52 52 H 1.09000 * 109.46778 * 179.97438 * 27 24 23 53 53 H 1.09001 * 109.47840 * 300.00351 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5328 -3.5742 7 1 3.5519 -1.0010 -3.3390 8 8 1.6511 -1.5387 -3.9443 9 6 2.7799 0.4462 -4.7355 10 7 3.2725 -0.2791 -5.9141 11 6 4.6248 -0.8040 -5.6821 12 6 3.2368 0.5733 -7.1099 13 6 3.5111 -0.2643 -8.3324 14 1 3.6932 -1.3240 -8.2311 15 6 3.5284 0.3221 -9.5802 16 7 3.3051 1.6123 -9.7036 17 14 3.8676 -0.7163 -11.0954 18 1 2.5866 -1.2407 -11.6332 19 1 4.5335 0.1177 -12.1281 20 1 4.7525 -1.8514 -10.7297 21 6 2.0323 -0.7106 1.2304 22 7 2.5502 -0.1521 2.2980 23 6 2.8518 -1.1671 3.1272 24 6 3.4734 -1.0469 4.4948 25 6 3.6478 -2.4411 5.1002 26 6 4.8393 -0.3678 4.3762 27 6 2.5641 -0.2094 5.3963 28 7 2.5080 -2.2704 2.5330 29 8 2.0343 -2.0300 1.4425 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.9173 -1.1205 -1.0289 34 1 1.0870 0.6164 -2.5525 35 1 2.7588 1.0462 -2.1182 36 1 0.7759 -1.1932 -4.1676 37 1 1.8241 0.9145 -4.9709 38 1 3.5007 1.2135 -4.4533 39 1 4.6087 -1.4870 -4.8328 40 1 4.9652 -1.3368 -6.5700 41 1 5.3039 0.0221 -5.4711 42 1 2.2529 1.0340 -7.1985 43 1 3.9958 1.3510 -7.0246 44 1 3.3176 2.0248 -10.5814 45 1 4.2955 -3.0377 4.4578 46 1 4.0969 -2.3541 6.0894 47 1 2.6746 -2.9249 5.1845 48 1 4.7152 0.6255 3.9449 49 1 5.2887 -0.2804 5.3655 50 1 5.4871 -0.9644 3.7339 51 1 1.5910 -0.6932 5.4808 52 1 3.0135 -0.1228 6.3856 53 1 2.4399 0.7839 4.9651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570391207.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:57 Heat of formation + Delta-G solvation = -12.832525 kcal Electronic energy + Delta-G solvation = -29753.498706 eV Core-core repulsion = 25662.272739 eV Total energy + Delta-G solvation = -4091.225968 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.70957 -39.67968 -38.75716 -38.12234 -36.78537 -35.77057 -34.59125 -33.34749 -31.70558 -30.24568 -28.90704 -28.38041 -28.30160 -27.35007 -25.87675 -25.62086 -24.62064 -22.83698 -22.54634 -21.75162 -20.36052 -19.18114 -18.54815 -18.51378 -17.66257 -17.14688 -16.81210 -16.48719 -16.17893 -16.10922 -15.84633 -15.62486 -15.23633 -15.14054 -14.99404 -14.74486 -14.09523 -13.84044 -13.71024 -13.64526 -13.49217 -13.35978 -13.21805 -13.16156 -12.89597 -12.81068 -12.73881 -12.63799 -12.57190 -12.52588 -12.49498 -12.43285 -12.36077 -12.21167 -11.99913 -11.96662 -11.82703 -11.58752 -11.37631 -11.05370 -10.61603 -10.60392 -9.57881 -8.93044 -8.19809 -6.29159 0.02184 1.10028 1.41882 1.43210 1.54234 1.70173 2.29043 2.41432 2.76091 3.04657 3.12794 3.39187 3.59506 3.78577 3.82735 3.90570 3.91070 4.02733 4.04679 4.19210 4.22531 4.32233 4.45789 4.52574 4.55131 4.62297 4.64269 4.66859 4.73005 4.74127 4.74402 4.80115 4.82665 4.85787 4.85871 4.89570 4.97985 5.08636 5.16131 5.17137 5.19903 5.24062 5.27783 5.28702 5.33853 5.65927 5.76134 6.06951 6.10401 6.34272 6.67038 6.87146 7.07946 7.12070 7.40470 8.90911 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.001685 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.006486 B =16612.455970 C =16864.715620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.185 3.815 3 H 0.102 0.898 4 N -0.673 5.673 5 C 0.037 3.963 6 C 0.130 3.870 7 H 0.087 0.913 8 O -0.553 6.553 9 C 0.023 3.977 10 N -0.539 5.539 11 C 0.041 3.959 12 C 0.207 3.793 13 C -0.524 4.524 14 H 0.060 0.940 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.184 3.816 22 N -0.488 5.488 23 C 0.175 3.825 24 C 0.018 3.982 25 C -0.136 4.136 26 C -0.134 4.134 27 C -0.133 4.133 28 N -0.402 5.402 29 O 0.078 5.922 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.345 0.655 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.380 0.620 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.010 0.990 42 H 0.007 0.993 43 H -0.039 1.039 44 H 0.264 0.736 45 H 0.050 0.950 46 H 0.094 0.906 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.047 0.953 51 H 0.050 0.950 52 H 0.094 0.906 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.439 -1.555 31.876 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 H 0.120 0.880 4 N -0.306 5.306 5 C -0.092 4.092 6 C 0.069 3.931 7 H 0.105 0.895 8 O -0.358 6.358 9 C -0.106 4.106 10 N -0.263 5.263 11 C -0.108 4.108 12 C 0.081 3.919 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.037 4.037 22 N -0.222 5.222 23 C -0.098 4.098 24 C 0.016 3.984 25 C -0.193 4.193 26 C -0.192 4.192 27 C -0.191 4.191 28 N -0.111 5.111 29 O 0.021 5.979 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.163 0.837 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.025 0.975 43 H -0.021 1.021 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.113 0.887 50 H 0.066 0.934 51 H 0.069 0.931 52 H 0.113 0.887 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.635 -2.924 32.220 32.460 hybrid contribution 0.987 1.389 -1.169 2.066 sum -1.648 -1.536 31.051 31.132 Atomic orbital electron populations 1.21862 0.90316 1.03679 1.03782 1.20253 0.97885 0.94643 0.79855 0.88020 1.60549 1.34367 1.32888 1.02816 1.22701 1.03125 0.93652 0.89747 1.21690 0.93006 0.88272 0.90108 0.89537 1.86574 1.24651 1.34846 1.89774 1.22849 1.00450 0.95532 0.91792 1.61912 1.23680 1.37676 1.03009 1.22211 0.88708 0.98499 1.01341 1.19398 0.94038 0.90558 0.87910 1.21485 1.47548 0.95335 0.91828 0.92210 1.25883 0.95140 0.96199 1.02382 1.70073 1.50990 1.11633 1.24715 0.85406 0.78545 0.78464 0.78337 1.19838 1.20715 1.19115 1.29242 0.95023 0.81240 0.98162 1.71848 1.17235 1.31029 1.02113 1.26383 0.99607 0.83188 1.00611 1.19266 0.96109 0.98858 0.84189 1.21817 1.02247 0.93348 1.01913 1.21843 0.93333 1.00163 1.03844 1.21834 0.98407 0.99103 0.99718 1.74668 1.16630 1.24766 0.94995 1.85336 1.58196 1.27279 1.27041 0.89088 0.91708 0.91117 0.83681 0.88282 0.92710 0.77187 0.90813 0.94920 0.90673 0.92903 0.97107 0.97492 1.02142 0.92710 0.93095 0.88697 0.92887 0.92201 0.88659 0.93391 0.93125 0.88698 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.40 71.98 0.68 -1.06 16 2 C 0.18 2.75 3.16 44.17 0.14 2.89 16 3 H 0.10 1.31 7.80 -2.39 -0.02 1.29 16 4 N -0.67 -11.52 6.25 -495.45 -3.10 -14.62 16 5 C 0.04 0.63 5.12 86.30 0.44 1.07 16 6 C 0.13 3.21 3.02 30.59 0.09 3.30 16 7 H 0.09 2.24 6.55 -2.39 -0.02 2.23 16 8 O -0.55 -15.70 13.15 -148.98 -1.96 -17.65 16 9 C 0.02 0.73 4.62 86.30 0.40 1.13 16 10 N -0.54 -22.83 4.62 -927.05 -4.28 -27.11 16 11 C 0.04 1.58 9.14 127.69 1.17 2.75 16 12 C 0.21 10.97 4.72 85.56 0.40 11.37 16 13 C -0.52 -29.94 8.46 25.60 0.22 -29.72 16 14 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 17 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C 0.18 3.62 7.00 88.38 0.62 4.23 16 22 N -0.49 -10.28 11.55 -303.21 -3.50 -13.79 16 23 C 0.18 3.66 6.40 138.47 0.89 4.55 16 24 C 0.02 0.26 0.99 -52.93 -0.05 0.20 16 25 C -0.14 -1.73 7.97 71.98 0.57 -1.16 16 26 C -0.13 -1.64 8.46 71.98 0.61 -1.03 16 27 C -0.13 -1.51 8.46 71.98 0.61 -0.90 16 28 N -0.40 -9.63 11.47 -60.33 -0.69 -10.32 16 29 O 0.08 1.80 11.31 74.85 0.85 2.65 16 30 H 0.09 0.95 7.45 -2.39 -0.02 0.93 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.34 6.30 8.35 -89.69 -0.75 5.55 16 34 H 0.10 1.43 7.44 -2.39 -0.02 1.42 16 35 H 0.05 0.84 8.06 -2.39 -0.02 0.82 16 36 H 0.38 8.74 9.05 -74.05 -0.67 8.07 16 37 H 0.07 2.30 7.93 -2.38 -0.02 2.28 16 38 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 39 H 0.07 2.47 6.47 -2.39 -0.02 2.46 16 40 H 0.05 2.26 6.76 -2.39 -0.02 2.25 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.01 0.39 7.93 -2.39 -0.02 0.37 16 43 H -0.04 -2.24 8.12 -2.39 -0.02 -2.26 16 44 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 45 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -70.40 428.03 -3.65 -74.06 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.52 Total: 17.65 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 7.24 Total: -1.80 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -11.29 Total: -121.54 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -1.11 Total: -15.01 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -70.40 -3.65 -74.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570391207.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.225 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds