Wall clock time and date at job start Sat Apr 11 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47157 * 2 1 4 4 N 1.46903 * 109.46643 * 119.99683 * 2 1 3 5 5 C 1.46903 * 111.00177 * 274.99960 * 4 2 1 6 6 C 1.52992 * 109.47578 * 180.02562 * 5 4 2 7 7 H 1.08998 * 109.46862 * 305.00661 * 6 5 4 8 8 O 1.42905 * 109.46980 * 64.99788 * 6 5 4 9 9 C 1.52997 * 109.47482 * 185.00096 * 6 5 4 10 10 N 1.46899 * 109.47254 * 179.97438 * 9 6 5 11 11 C 1.46902 * 111.00255 * 293.95367 * 10 9 6 12 12 C 1.46901 * 111.00103 * 169.99667 * 10 9 6 13 13 C 1.50696 * 109.47399 * 190.00043 * 12 10 9 14 14 H 1.08005 * 119.99725 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00189 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99750 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99818 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46963 * 90.00024 * 17 15 13 19 19 H 1.48502 * 109.47084 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.47321 * 330.00380 * 17 15 13 21 21 C 1.50694 * 109.47317 * 239.99506 * 2 1 3 22 22 N 1.31132 * 126.55185 * 105.00370 * 21 2 1 23 23 C 1.34492 * 105.61564 * 180.02562 * 22 21 2 24 24 C 1.50700 * 126.28470 * 179.97438 * 23 22 21 25 25 C 1.52995 * 109.47643 * 59.99447 * 24 23 22 26 26 C 1.53008 * 109.46945 * 179.97438 * 24 23 22 27 27 C 1.52999 * 109.46939 * 299.99247 * 24 23 22 28 28 N 1.29946 * 107.42822 * 359.97438 * 23 22 21 29 29 O 1.21306 * 110.24449 * 359.70590 * 28 23 22 30 30 H 1.08999 * 109.47607 * 300.00613 * 1 2 3 31 31 H 1.09003 * 109.46749 * 60.00768 * 1 2 3 32 32 H 1.09006 * 109.47118 * 180.02562 * 1 2 3 33 33 H 1.00906 * 110.99771 * 151.04910 * 4 2 1 34 34 H 1.09001 * 109.46871 * 59.99686 * 5 4 2 35 35 H 1.09004 * 109.46883 * 300.00718 * 5 4 2 36 36 H 0.96696 * 114.00036 * 60.00352 * 8 6 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 9 6 5 38 38 H 1.09001 * 109.46832 * 299.99974 * 9 6 5 39 39 H 1.09005 * 109.46528 * 59.99744 * 11 10 9 40 40 H 1.09000 * 109.46785 * 179.97438 * 11 10 9 41 41 H 1.08997 * 109.47044 * 300.00388 * 11 10 9 42 42 H 1.08998 * 109.47407 * 310.00536 * 12 10 9 43 43 H 1.09007 * 109.46608 * 69.99971 * 12 10 9 44 44 H 0.97008 * 119.99731 * 179.97438 * 16 15 13 45 45 H 1.09006 * 109.46875 * 60.00010 * 25 24 23 46 46 H 1.09000 * 109.47767 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47164 * 300.00217 * 25 24 23 48 48 H 1.08990 * 109.47239 * 59.99253 * 26 24 23 49 49 H 1.09000 * 109.47154 * 180.02562 * 26 24 23 50 50 H 1.09002 * 109.46659 * 299.99329 * 26 24 23 51 51 H 1.08996 * 109.47293 * 60.00588 * 27 24 23 52 52 H 1.09008 * 109.46815 * 180.02562 * 27 24 23 53 53 H 1.08993 * 109.47339 * 300.00190 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3470 6 6 2.5960 -0.5326 3.5743 7 1 1.9707 -1.4080 3.7501 8 8 3.9444 -0.9482 3.3480 9 6 2.5436 0.3855 4.7971 10 7 3.0362 -0.3400 5.9756 11 6 2.1343 -1.4444 6.3290 12 6 3.2250 0.5701 7.1132 13 6 3.9556 -0.1502 8.2170 14 1 4.2505 -1.1809 8.0864 15 6 4.2474 0.5066 9.3936 16 7 4.8854 -0.1219 10.3567 17 14 3.7379 2.2895 9.6192 18 1 2.3790 2.3443 10.2157 19 1 4.7021 2.9696 10.5209 20 1 3.7274 2.9720 8.3004 21 6 2.0324 -0.7105 -1.2303 22 7 2.5498 -0.1521 -2.2980 23 6 2.8507 -1.1670 -3.1276 24 6 3.4715 -1.0466 -4.4955 25 6 4.8374 -0.3674 -4.3779 26 6 3.6464 -2.4410 -5.1007 27 6 2.5616 -0.2095 -5.3967 28 7 2.5079 -2.2704 -2.5330 29 8 2.0413 -2.0304 -1.4393 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 2.9173 -1.1205 1.0289 34 1 1.0869 0.6165 2.5525 35 1 2.7587 1.0463 2.1182 36 1 4.5583 -0.2194 3.1840 37 1 1.5151 0.7025 4.9697 38 1 3.1690 1.2608 4.6212 39 1 2.0673 -2.1404 5.4928 40 1 2.5229 -1.9648 7.2044 41 1 1.1439 -1.0475 6.5516 42 1 3.8086 1.4339 6.7945 43 1 2.2530 0.9028 7.4775 44 1 5.0911 0.3403 11.1844 45 1 5.4857 -0.9638 -3.7358 46 1 5.2866 -0.2807 -5.3672 47 1 4.7132 0.6259 -3.9466 48 1 2.6736 -2.9253 -5.1844 49 1 4.0958 -2.3541 -6.0899 50 1 4.2949 -3.0370 -4.4586 51 1 2.4374 0.7838 -4.9654 52 1 3.0104 -0.1229 -6.3863 53 1 1.5886 -0.6934 -5.4805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570391209.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:03 Heat of formation + Delta-G solvation = -11.459060 kcal Electronic energy + Delta-G solvation = -29828.551221 eV Core-core repulsion = 25737.384811 eV Total energy + Delta-G solvation = -4091.166410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.70728 -39.75159 -38.75507 -38.14522 -36.87165 -35.76726 -34.58218 -33.33404 -31.74531 -30.55939 -29.24855 -28.37910 -28.29781 -27.35135 -25.77415 -25.61800 -24.46017 -22.73023 -22.44571 -21.71509 -20.36136 -19.18345 -19.00973 -18.52249 -17.68068 -17.22958 -16.69229 -16.50906 -16.24459 -16.14878 -15.94970 -15.68695 -15.24684 -15.04151 -14.98746 -14.57560 -14.45064 -13.96979 -13.68127 -13.65437 -13.53058 -13.46463 -13.34284 -13.17014 -12.93724 -12.82446 -12.73587 -12.63839 -12.55947 -12.53565 -12.48934 -12.40147 -12.26076 -12.18949 -11.98659 -11.82401 -11.80068 -11.56257 -11.48541 -11.05858 -10.78151 -10.73355 -9.61625 -8.93098 -8.26560 -6.30258 0.02772 1.10389 1.35403 1.37657 1.48403 1.70907 2.29788 2.35731 2.76112 3.02885 3.06987 3.35003 3.60012 3.72413 3.83035 3.90771 3.91524 4.03158 4.11307 4.17620 4.19509 4.27757 4.46691 4.53336 4.55891 4.62463 4.64540 4.67152 4.68805 4.74165 4.74521 4.78369 4.84394 4.85839 4.86164 4.89552 4.93611 4.98273 5.05090 5.14083 5.16947 5.24443 5.26389 5.28484 5.30240 5.55445 5.77254 6.01221 6.12412 6.38650 6.69838 6.76861 6.99380 7.08232 7.33292 8.90385 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.023989 B = 0.001755 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.918814 B =15953.056622 C =16114.421091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.185 3.815 3 H 0.104 0.896 4 N -0.680 5.680 5 C 0.038 3.962 6 C 0.122 3.878 7 H 0.095 0.905 8 O -0.566 6.566 9 C 0.022 3.978 10 N -0.541 5.541 11 C 0.041 3.959 12 C 0.172 3.828 13 C -0.517 4.517 14 H 0.033 0.967 15 C 0.003 3.997 16 N -0.950 5.950 17 Si 0.952 3.048 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.245 1.245 21 C 0.184 3.816 22 N -0.488 5.488 23 C 0.175 3.825 24 C 0.017 3.983 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.132 4.132 28 N -0.403 5.403 29 O 0.076 5.924 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.349 0.651 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.379 0.621 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.023 0.977 42 H 0.032 0.968 43 H -0.013 1.013 44 H 0.266 0.734 45 H 0.046 0.954 46 H 0.095 0.905 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.094 0.906 50 H 0.049 0.951 51 H 0.060 0.940 52 H 0.094 0.906 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.658 4.593 -34.163 35.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.074 3.926 3 H 0.122 0.878 4 N -0.314 5.314 5 C -0.091 4.091 6 C 0.062 3.938 7 H 0.113 0.887 8 O -0.371 6.371 9 C -0.107 4.107 10 N -0.265 5.265 11 C -0.107 4.107 12 C 0.045 3.955 13 C -0.556 4.556 14 H 0.051 0.949 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.775 3.225 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.168 1.168 21 C -0.037 4.037 22 N -0.222 5.222 23 C -0.098 4.098 24 C 0.016 3.984 25 C -0.192 4.192 26 C -0.193 4.193 27 C -0.190 4.190 28 N -0.111 5.111 29 O 0.020 5.980 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.168 0.832 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.227 0.773 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.050 0.950 43 H 0.005 0.995 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.113 0.887 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.113 0.887 50 H 0.068 0.932 51 H 0.079 0.921 52 H 0.113 0.887 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.772 3.106 -34.467 35.702 hybrid contribution 0.248 1.570 1.088 1.927 sum -8.524 4.676 -33.379 34.766 Atomic orbital electron populations 1.21879 0.90277 1.03692 1.03904 1.20257 0.97843 0.94730 0.79796 0.87843 1.60569 1.34797 1.32924 1.03126 1.22681 1.03245 0.93593 0.89600 1.21850 0.83636 0.97367 0.90914 0.88744 1.86609 1.18878 1.37963 1.93681 1.22878 0.99349 0.97082 0.91412 1.61713 1.47965 1.11520 1.05267 1.22188 0.93289 0.94518 1.00689 1.19954 0.94191 0.92476 0.88898 1.21308 1.36158 0.99032 0.99077 0.94881 1.25924 0.94843 1.03321 0.95279 1.70072 1.42832 1.39395 1.06836 0.85648 0.78337 0.79210 0.79287 1.19344 1.20868 1.16815 1.29280 0.95034 0.81206 0.98225 1.71839 1.17131 1.31017 1.02174 1.26381 0.99566 0.83211 1.00623 1.19267 0.96127 0.98840 0.84212 1.21843 0.93325 1.00183 1.03841 1.21821 1.02225 0.93384 1.01917 1.21831 0.98374 0.99108 0.99705 1.74673 1.16823 1.24806 0.94819 1.85328 1.58515 1.27307 1.26813 0.88918 0.91058 0.91747 0.83207 0.87828 0.92688 0.77281 0.93409 0.90244 0.90781 0.93971 0.95894 0.95008 0.99544 0.92501 0.93466 0.88658 0.92129 0.92869 0.88695 0.93170 0.92069 0.88718 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.40 71.98 0.68 -0.89 16 2 C 0.18 2.57 3.16 44.17 0.14 2.71 16 3 H 0.10 1.19 7.80 -2.39 -0.02 1.17 16 4 N -0.68 -11.03 6.30 -495.46 -3.12 -14.15 16 5 C 0.04 0.57 5.16 86.30 0.44 1.02 16 6 C 0.12 2.80 3.08 30.59 0.09 2.89 16 7 H 0.09 2.42 6.55 -2.39 -0.02 2.41 16 8 O -0.57 -15.12 12.72 -148.98 -1.90 -17.01 16 9 C 0.02 0.60 4.62 86.30 0.40 1.00 16 10 N -0.54 -21.56 4.62 -927.04 -4.28 -25.84 16 11 C 0.04 1.58 9.14 127.69 1.17 2.75 16 12 C 0.17 8.05 3.79 85.56 0.32 8.38 16 13 C -0.52 -30.16 9.01 25.60 0.23 -29.93 16 14 H 0.03 2.18 7.37 -2.91 -0.02 2.16 16 15 C 0.00 0.19 5.47 84.66 0.46 0.65 16 16 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 17 Si 0.95 43.53 27.47 68.60 1.88 45.41 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 21 C 0.18 3.52 7.00 88.38 0.62 4.14 16 22 N -0.49 -10.08 11.55 -303.22 -3.50 -13.58 16 23 C 0.18 3.64 6.40 138.46 0.89 4.53 16 24 C 0.02 0.25 0.99 -52.93 -0.05 0.20 16 25 C -0.13 -1.64 8.45 71.98 0.61 -1.03 16 26 C -0.14 -1.74 7.97 71.98 0.57 -1.17 16 27 C -0.13 -1.47 8.46 71.98 0.61 -0.86 16 28 N -0.40 -9.64 11.47 -60.32 -0.69 -10.33 16 29 O 0.08 1.76 11.31 74.85 0.85 2.61 16 30 H 0.09 0.80 7.45 -2.39 -0.02 0.78 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 33 H 0.35 6.57 7.91 -89.69 -0.71 5.86 16 34 H 0.10 1.25 7.44 -2.39 -0.02 1.23 16 35 H 0.05 0.69 8.06 -2.39 -0.02 0.67 16 36 H 0.38 7.90 9.05 -74.06 -0.67 7.23 16 37 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 38 H 0.08 2.05 7.93 -2.39 -0.02 2.04 16 39 H 0.07 2.46 6.47 -2.38 -0.02 2.44 16 40 H 0.04 1.90 6.76 -2.39 -0.02 1.88 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.03 1.46 6.99 -2.39 -0.02 1.44 16 43 H -0.01 -0.60 7.55 -2.38 -0.02 -0.62 16 44 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 45 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 53 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -73.75 423.71 -3.82 -77.56 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.53 Total: 20.66 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 7.18 Total: -5.63 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -11.30 Total: -123.60 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.05 Total: -14.41 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -73.75 -3.82 -77.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570391209.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.104 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds