Wall clock time and date at job start Sat Apr 11 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46912 * 109.47023 * 2 1 4 4 C 1.46897 * 110.99557 * 66.04747 * 3 2 1 5 5 C 1.53002 * 109.46608 * 200.50308 * 4 3 2 6 6 C 1.46898 * 111.00007 * 189.99864 * 3 2 1 7 7 C 1.53007 * 109.47085 * 76.29361 * 6 3 2 8 8 N 1.46491 * 109.47302 * 182.90852 * 7 6 3 9 9 C 1.34778 * 120.00204 * 180.02562 * 8 7 6 10 10 O 1.21344 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.49445 * 120.00157 * 180.02562 * 9 8 7 12 12 O 1.21348 * 120.00044 * 359.97438 * 11 9 8 13 13 N 1.34778 * 120.00157 * 179.97438 * 11 9 8 14 14 C 1.46502 * 120.00364 * 180.02562 * 13 11 9 15 15 C 1.53079 * 109.44034 * 84.79173 * 14 13 11 16 16 C 1.53195 * 109.29040 * 181.23786 * 15 14 13 17 17 N 1.46923 * 108.89333 * 305.57764 * 16 15 14 18 18 C 1.36933 * 120.63005 * 233.51464 * 17 16 15 19 19 H 1.08006 * 119.99846 * 145.64616 * 18 17 16 20 20 C 1.38814 * 120.00343 * 325.64421 * 18 17 16 21 21 N 1.31622 * 119.99728 * 343.46841 * 20 18 17 22 22 Si 1.86800 * 120.00020 * 163.46982 * 20 18 17 23 23 H 1.48493 * 109.47143 * 90.00292 * 22 20 18 24 24 H 1.48496 * 109.46805 * 210.00094 * 22 20 18 25 25 H 1.48495 * 109.47124 * 330.00124 * 22 20 18 26 26 C 1.46930 * 118.73989 * 53.54305 * 17 16 15 27 27 C 1.53038 * 109.45987 * 204.99876 * 14 13 11 28 28 H 1.09004 * 109.47334 * 60.00068 * 1 2 3 29 29 H 1.08998 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46998 * 300.00031 * 1 2 3 31 31 H 1.09002 * 109.47476 * 240.00774 * 2 1 3 32 32 H 1.08992 * 109.47698 * 119.99897 * 2 1 3 33 33 H 1.08999 * 109.47075 * 320.50242 * 4 3 2 34 34 H 1.08997 * 109.47153 * 80.50836 * 4 3 2 35 35 H 1.08994 * 109.47525 * 298.22842 * 5 4 3 36 36 H 1.09002 * 109.47325 * 58.22989 * 5 4 3 37 37 H 1.09002 * 109.46974 * 178.23181 * 5 4 3 38 38 H 1.08994 * 109.47357 * 316.29574 * 6 3 2 39 39 H 1.08997 * 109.47304 * 196.29382 * 6 3 2 40 40 H 1.09004 * 109.46948 * 62.90880 * 7 6 3 41 41 H 1.08999 * 109.47090 * 302.91320 * 7 6 3 42 42 H 0.96998 * 120.00141 * 0.02562 * 8 7 6 43 43 H 0.97002 * 119.99604 * 359.97438 * 13 11 9 44 44 H 1.09002 * 109.45504 * 324.97038 * 14 13 11 45 45 H 1.09003 * 109.39059 * 61.36655 * 15 14 13 46 46 H 1.08997 * 109.62134 * 301.25453 * 15 14 13 47 47 H 1.09002 * 109.58300 * 185.72305 * 16 15 14 48 48 H 1.09005 * 109.58605 * 65.44303 * 16 15 14 49 49 H 0.96996 * 119.99897 * 179.97438 * 21 20 18 50 50 H 1.08997 * 109.58889 * 66.17110 * 26 17 16 51 51 H 1.09000 * 109.58883 * 186.46220 * 26 17 16 52 52 H 1.09003 * 109.49622 * 58.67717 * 27 14 13 53 53 H 1.08995 * 109.52593 * 298.59189 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6701 2.0669 1.2533 5 6 1.7193 3.5813 1.0408 6 6 3.4685 1.4313 -0.2381 7 6 3.7494 1.1873 -1.7223 8 7 5.1967 1.1643 -1.9479 9 6 5.6821 0.9633 -3.1891 10 8 4.9203 0.8010 -4.1196 11 6 7.1585 0.9393 -3.4193 12 8 7.9204 1.1011 -2.4887 13 7 7.6439 0.7378 -4.6603 14 6 9.0913 0.7136 -4.8859 15 6 9.6279 -0.6915 -4.6014 16 6 11.1457 -0.7051 -4.8083 17 7 11.4467 -0.2027 -6.1558 18 6 12.2197 -0.9348 -7.0168 19 1 12.0176 -0.9107 -8.0775 20 6 13.2632 -1.7079 -6.5265 21 7 13.7218 -1.4994 -5.3105 22 14 14.0167 -3.0440 -7.5925 23 1 15.1386 -2.4743 -8.3810 24 1 14.5253 -4.1389 -6.7279 25 1 12.9852 -3.5810 -8.5159 26 6 10.9029 1.1006 -6.5616 27 6 9.3873 1.0935 -6.3385 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.6650 1.7751 1.5576 34 1 2.3810 1.7859 2.0303 35 1 2.7319 3.8772 0.7671 36 1 1.0313 3.8587 0.2421 37 1 1.4295 4.0870 1.9619 38 1 3.9591 0.6603 0.3560 39 1 3.8528 2.4102 0.0483 40 1 3.3023 1.9869 -2.3129 41 1 3.3198 0.2312 -2.0210 42 1 5.8057 1.2937 -1.2041 43 1 7.0349 0.6080 -5.4041 44 1 9.5747 1.4269 -4.2183 45 1 9.1613 -1.4021 -5.2836 46 1 9.3984 -0.9696 -3.5727 47 1 11.5192 -1.7241 -4.7064 48 1 11.6216 -0.0655 -4.0649 49 1 14.4506 -2.0398 -4.9677 50 1 11.3568 1.8889 -5.9612 51 1 11.1184 1.2742 -7.6159 52 1 8.9846 2.0852 -6.5445 53 1 8.9247 0.3670 -7.0066 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585682050.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:05 Heat of formation + Delta-G solvation = -74.432696 kcal Electronic energy + Delta-G solvation = -29648.814093 eV Core-core repulsion = 25554.916942 eV Total energy + Delta-G solvation = -4093.897151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.81180 -40.14104 -39.21332 -38.80360 -36.51154 -35.76171 -33.92171 -32.69520 -31.85502 -31.76073 -31.32118 -28.71029 -27.23435 -25.59911 -23.99536 -23.95358 -23.81862 -22.95697 -21.66721 -21.35570 -20.92922 -19.55543 -18.63867 -18.06477 -17.22940 -17.06131 -16.86633 -16.71054 -16.40591 -16.12428 -15.76652 -15.47549 -15.38182 -15.37052 -15.02010 -14.75962 -14.74803 -14.46692 -14.20705 -14.09065 -13.42867 -13.21218 -13.11656 -13.06095 -12.92737 -12.89277 -12.67091 -12.63933 -12.57526 -12.43031 -12.32135 -12.16529 -12.07490 -11.86953 -11.78193 -11.59633 -11.50022 -11.39430 -10.72500 -10.58374 -10.35079 -10.18184 -9.36327 -8.63022 -7.88806 -5.40598 0.31238 1.23688 1.47112 1.48859 1.58519 2.11268 2.47622 2.51030 3.01223 3.27492 3.41704 3.67312 3.77047 3.82548 3.95605 4.01241 4.02558 4.25453 4.28641 4.30292 4.42333 4.45199 4.52290 4.60128 4.64655 4.71426 4.73081 4.73480 4.81113 4.83789 4.92136 4.96075 4.99441 5.04083 5.12054 5.12766 5.13444 5.14378 5.30290 5.33523 5.36866 5.40021 5.40618 5.63414 5.67420 5.89024 6.04502 6.10636 6.33389 6.41601 6.70982 6.92582 7.14413 7.82773 8.39051 9.17633 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026049 B = 0.001700 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.653857 B =16468.611954 C =16645.513830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.544 5.544 4 C 0.046 3.954 5 C -0.146 4.146 6 C 0.047 3.953 7 C 0.127 3.873 8 N -0.689 5.689 9 C 0.515 3.485 10 O -0.539 6.539 11 C 0.504 3.496 12 O -0.545 6.545 13 N -0.682 5.682 14 C 0.160 3.840 15 C -0.133 4.133 16 C 0.187 3.813 17 N -0.608 5.608 18 C -0.269 4.269 19 H 0.067 0.933 20 C -0.045 4.045 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.143 3.857 27 C -0.125 4.125 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.419 0.581 43 H 0.418 0.582 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.044 0.956 48 H -0.002 1.002 49 H 0.250 0.750 50 H 0.015 0.985 51 H 0.066 0.934 52 H 0.092 0.908 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.305 7.317 12.279 30.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.270 5.270 4 C -0.081 4.081 5 C -0.203 4.203 6 C -0.081 4.081 7 C 0.004 3.996 8 N -0.342 5.342 9 C 0.295 3.705 10 O -0.416 6.416 11 C 0.285 3.715 12 O -0.423 6.423 13 N -0.333 5.333 14 C 0.056 3.944 15 C -0.173 4.173 16 C 0.060 3.940 17 N -0.331 5.331 18 C -0.399 4.399 19 H 0.085 0.915 20 C -0.241 4.241 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.193 1.193 26 C 0.017 3.983 27 C -0.164 4.164 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.257 0.743 43 H 0.256 0.744 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.016 0.984 49 H 0.059 0.941 50 H 0.033 0.967 51 H 0.085 0.915 52 H 0.110 0.890 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.438 7.499 11.975 30.862 hybrid contribution 1.391 -1.263 0.394 1.920 sum -26.047 6.236 12.369 29.502 Atomic orbital electron populations 1.21793 0.93966 1.02184 1.02392 1.22220 0.96918 0.88318 1.00973 1.61880 1.12437 1.16511 1.36160 1.22210 1.01577 0.95119 0.89198 1.21766 1.01954 0.94458 1.02144 1.22198 0.89132 1.02949 0.93834 1.21398 0.77961 1.02794 0.97463 1.45643 1.09437 1.70135 1.09029 1.19946 0.88346 0.78085 0.84085 1.90759 1.59386 1.48895 1.42608 1.20299 0.89155 0.78088 0.83993 1.90767 1.59798 1.49324 1.42428 1.45946 1.08680 1.69376 1.09344 1.20895 0.78299 0.97049 0.98172 1.22348 0.97858 0.96797 1.00287 1.20380 0.90366 0.97594 0.85616 1.44258 1.58128 1.17716 1.13025 1.19444 1.07336 1.22447 0.90665 0.91496 1.25986 0.96733 1.03293 0.98100 1.70189 1.27758 1.40935 1.18872 0.85313 0.78382 0.78862 0.78079 1.20892 1.22089 1.19313 1.21032 0.91580 0.86827 0.98857 1.22173 0.97870 1.02620 0.93734 0.92452 0.91451 0.92074 0.90981 0.94414 0.89624 0.94271 0.93055 0.92498 0.91267 0.93083 0.89030 0.90689 0.91335 0.74341 0.74421 0.90920 0.92044 0.92737 0.93747 0.98434 0.94068 0.96664 0.91505 0.88962 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 71.98 0.71 -0.62 16 2 C 0.04 0.47 5.50 86.30 0.47 0.94 16 3 N -0.54 -6.31 4.36 -896.22 -3.90 -10.22 16 4 C 0.05 0.43 5.55 86.30 0.48 0.91 16 5 C -0.15 -1.30 10.01 71.98 0.72 -0.58 16 6 C 0.05 0.54 4.92 86.31 0.42 0.97 16 7 C 0.13 1.97 5.83 86.38 0.50 2.47 16 8 N -0.69 -12.78 5.55 -464.42 -2.58 -15.35 16 9 C 0.52 12.71 7.89 87.27 0.69 13.40 16 10 O -0.54 -15.25 16.48 -3.23 -0.05 -15.30 16 11 C 0.50 14.30 7.85 87.27 0.69 14.99 16 12 O -0.55 -18.09 16.14 -3.24 -0.05 -18.15 16 13 N -0.68 -18.84 5.07 -443.68 -2.25 -21.09 16 14 C 0.16 5.26 2.41 45.03 0.11 5.37 16 15 C -0.13 -5.14 5.66 30.69 0.17 -4.97 16 16 C 0.19 9.16 5.27 86.36 0.45 9.61 16 17 N -0.61 -30.21 2.96 -699.07 -2.07 -32.27 16 18 C -0.27 -14.64 9.51 84.03 0.80 -13.84 16 19 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 20 C -0.04 -2.50 4.88 84.86 0.41 -2.09 16 21 N -0.93 -55.76 11.66 21.65 0.25 -55.51 16 22 Si 0.97 44.66 29.59 68.60 2.03 46.69 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.14 5.69 6.52 86.36 0.56 6.26 16 27 C -0.12 -3.83 5.55 30.67 0.17 -3.66 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.48 6.24 -2.39 -0.01 0.47 16 31 H 0.07 0.86 6.63 -2.39 -0.02 0.85 16 32 H 0.04 0.39 8.12 -2.39 -0.02 0.37 16 33 H 0.09 0.69 5.87 -2.39 -0.01 0.68 16 34 H 0.04 0.35 7.99 -2.39 -0.02 0.33 16 35 H 0.05 0.49 6.85 -2.39 -0.02 0.48 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.05 0.55 7.99 -2.39 -0.02 0.53 16 39 H 0.09 0.94 6.56 -2.39 -0.02 0.92 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.16 6.74 -2.39 -0.02 1.14 16 42 H 0.42 6.81 7.94 -92.71 -0.74 6.07 16 43 H 0.42 10.06 8.07 -92.71 -0.75 9.31 16 44 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16 45 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.04 2.44 6.54 -2.39 -0.02 2.43 16 48 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 49 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 50 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.07 2.55 7.93 -2.39 -0.02 2.54 16 52 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 53 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -67.77 417.15 -1.83 -69.60 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -0.57 Total: 22.43 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 7.37 Total: 29.17 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -10.55 Total: -134.44 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.11 Total: -33.45 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.77 -1.83 -69.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585682050.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.836 kcal (2) G-P(sol) polarization free energy of solvation -67.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds