Wall clock time and date at job start Sat Apr 11 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.54442 * 2 1 4 4 C 1.53097 * 109.50318 * 239.89221 * 2 1 3 5 5 O 1.43016 * 109.25478 * 183.21848 * 4 2 1 6 6 C 1.43015 * 113.73965 * 58.67152 * 5 4 2 7 7 C 1.53093 * 109.25810 * 301.32492 * 6 5 4 8 8 N 1.47011 * 109.50618 * 120.10963 * 2 1 3 9 9 C 1.46896 * 111.00160 * 302.32448 * 8 2 1 10 10 C 1.53002 * 109.47214 * 302.41102 * 9 8 2 11 11 N 1.46499 * 109.47041 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00113 * 179.97438 * 11 10 9 13 13 O 1.21592 * 119.99835 * 4.97602 * 12 11 10 14 14 N 1.34774 * 120.00363 * 184.98105 * 12 11 10 15 15 C 1.47082 * 120.88098 * 354.77405 * 14 12 11 16 16 C 1.53240 * 108.68273 * 231.11641 * 15 14 12 17 17 N 1.46957 * 109.31055 * 306.46663 * 16 15 14 18 18 C 1.46893 * 110.96924 * 187.06611 * 17 16 15 19 19 C 1.50702 * 109.47268 * 65.49712 * 18 17 16 20 20 H 1.08001 * 119.99990 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00164 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99982 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00096 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47278 * 90.00005 * 23 21 19 25 25 H 1.48503 * 109.47203 * 209.99923 * 23 21 19 26 26 H 1.48497 * 109.47323 * 329.99922 * 23 21 19 27 27 C 1.46904 * 111.44347 * 62.80995 * 17 16 15 28 28 C 1.47078 * 120.88449 * 174.80498 * 14 12 11 29 29 H 1.09009 * 109.47153 * 299.89104 * 1 2 3 30 30 H 1.08998 * 109.47301 * 59.88838 * 1 2 3 31 31 H 1.08999 * 109.47556 * 179.89055 * 1 2 3 32 32 H 1.09000 * 109.50679 * 63.28344 * 4 2 1 33 33 H 1.08997 * 109.50433 * 303.14903 * 4 2 1 34 34 H 1.09011 * 109.50515 * 181.39389 * 6 5 4 35 35 H 1.09002 * 109.54443 * 61.28828 * 6 5 4 36 36 H 1.08998 * 109.51079 * 296.91784 * 7 6 5 37 37 H 1.09000 * 109.54398 * 176.80486 * 7 6 5 38 38 H 1.08998 * 109.47292 * 182.41009 * 9 8 2 39 39 H 1.09001 * 109.47120 * 62.41181 * 9 8 2 40 40 H 1.08993 * 109.46873 * 60.00222 * 10 9 8 41 41 H 1.08994 * 109.46992 * 299.99694 * 10 9 8 42 42 H 0.97002 * 120.00495 * 0.02562 * 11 10 9 43 43 H 1.09001 * 109.62899 * 350.91585 * 15 14 12 44 44 H 1.08992 * 109.62950 * 111.30261 * 15 14 12 45 45 H 1.09000 * 109.49641 * 66.22525 * 16 15 14 46 46 H 1.09007 * 109.49012 * 186.31119 * 16 15 14 47 47 H 1.09001 * 109.47035 * 185.49268 * 18 17 16 48 48 H 1.09002 * 109.47364 * 305.49704 * 18 17 16 49 49 H 0.97003 * 119.99894 * 180.02562 * 22 21 19 50 50 H 1.08992 * 109.49508 * 177.02434 * 27 17 16 51 51 H 1.09008 * 109.48931 * 56.94244 * 27 17 16 52 52 H 1.09002 * 109.62371 * 248.50474 * 28 14 12 53 53 H 1.08999 * 109.62697 * 8.88051 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0411 -0.7239 -1.2484 5 8 3.4693 -0.7867 -1.2057 6 6 3.9817 -1.4579 -0.0514 7 6 3.4903 -0.7414 1.2091 8 7 2.0209 -0.6952 1.1988 9 6 1.5054 -0.0644 2.4212 10 6 1.9158 1.4093 2.4468 11 7 1.4013 2.0384 3.6656 12 6 1.6420 3.3429 3.9039 13 8 2.2073 4.0196 3.0667 14 7 1.2562 3.8974 5.0702 15 6 0.4716 3.1288 6.0484 16 6 -0.7591 3.9510 6.4453 17 7 -0.3295 5.2822 6.8958 18 6 -1.4611 6.0428 7.4425 19 6 -1.9596 5.3705 8.6958 20 1 -1.4836 4.4683 9.0505 21 6 -3.0232 5.9073 9.3896 22 7 -3.6025 7.0063 8.9580 23 14 -3.6415 5.0737 10.9427 24 1 -2.9190 5.6204 12.1193 25 1 -5.0970 5.3264 11.0943 26 1 -3.4002 3.6114 10.8493 27 6 0.3328 6.0267 5.8164 28 6 1.6081 5.2872 5.3983 29 1 -0.3634 0.5122 0.8910 30 1 -0.3634 0.5155 -0.8889 31 1 -0.3634 -1.0276 -0.0020 32 1 1.7272 -0.1794 -2.1390 33 1 1.6330 -1.7342 -1.2759 34 1 5.0715 -1.4443 -0.0764 35 1 3.6308 -2.4899 -0.0439 36 1 3.8862 0.2739 1.2284 37 1 3.8312 -1.2819 2.0921 38 1 1.9179 -0.5716 3.2934 39 1 0.4181 -0.1392 2.4379 40 1 1.5033 1.9164 1.5746 41 1 3.0031 1.4840 2.4301 42 1 0.8879 1.5160 4.3016 43 1 0.1538 2.1859 5.6032 44 1 1.0797 2.9304 6.9309 45 1 -1.4191 4.0569 5.5843 46 1 -1.2903 3.4447 7.2513 47 1 -1.1375 7.0566 7.6782 48 1 -2.2639 6.0795 6.7061 49 1 -4.3506 7.3841 9.4464 50 1 0.5903 7.0256 6.1682 51 1 -0.3397 6.1037 4.9619 52 1 2.3245 5.2993 6.2197 53 1 2.0451 5.7703 4.5243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583179.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:23 Heat of formation + Delta-G solvation = -71.132054 kcal Electronic energy + Delta-G solvation = -30596.044613 eV Core-core repulsion = 26502.290588 eV Total energy + Delta-G solvation = -4093.754025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60141 -40.88327 -39.17780 -37.67807 -36.00142 -35.56001 -34.36066 -33.58860 -32.20074 -30.79920 -29.83930 -28.35794 -27.38480 -26.49657 -24.73867 -24.11595 -23.76228 -23.54755 -22.26271 -20.82861 -20.41320 -19.09536 -18.49018 -17.75210 -17.65619 -17.11684 -16.86042 -16.70174 -16.52691 -16.11870 -16.00868 -15.75238 -15.65789 -15.37095 -15.30969 -15.14718 -14.74657 -14.59611 -14.35915 -14.02540 -13.66839 -13.43706 -13.26525 -13.04703 -12.99757 -12.83284 -12.79352 -12.63922 -12.58816 -12.42001 -12.32215 -12.19311 -12.14326 -11.84179 -11.78099 -11.51021 -11.30576 -11.28019 -10.62985 -10.61236 -10.33040 -9.63822 -9.46770 -9.05984 -8.19682 -6.30233 1.44229 1.45686 1.52021 1.56337 2.02049 2.41415 2.60951 2.88243 2.97367 3.12539 3.20978 3.70691 3.78179 3.89087 3.93078 3.97239 4.03057 4.09187 4.14449 4.18750 4.22347 4.25185 4.41378 4.42152 4.42516 4.49558 4.63000 4.70311 4.72402 4.73986 4.81539 4.83015 4.86435 4.90885 4.92633 4.97403 5.00523 5.01288 5.17595 5.21581 5.29042 5.36777 5.40860 5.63797 5.86735 5.87922 5.88289 6.02669 6.17189 6.26651 6.54634 6.85005 6.86687 7.39827 7.44276 8.91654 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.001967 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.833667 B =14228.161455 C =14715.665378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 H 0.036 0.964 4 C 0.068 3.932 5 O -0.409 6.409 6 C 0.061 3.939 7 C 0.009 3.991 8 N -0.519 5.519 9 C 0.049 3.951 10 C 0.109 3.891 11 N -0.729 5.729 12 C 0.704 3.296 13 O -0.637 6.637 14 N -0.627 5.627 15 C 0.126 3.874 16 C 0.051 3.949 17 N -0.537 5.537 18 C 0.207 3.793 19 C -0.519 4.519 20 H 0.072 0.928 21 C -0.002 4.002 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.257 1.257 27 C 0.044 3.956 28 C 0.145 3.855 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.411 0.589 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.011 0.989 46 H 0.090 0.910 47 H 0.004 0.996 48 H -0.042 1.042 49 H 0.263 0.737 50 H 0.082 0.918 51 H 0.011 0.989 52 H 0.083 0.917 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.966 -21.085 -15.754 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 H 0.054 0.946 4 C -0.009 4.009 5 O -0.328 6.328 6 C -0.016 4.016 7 C -0.119 4.119 8 N -0.243 5.243 9 C -0.079 4.079 10 C -0.017 4.017 11 N -0.388 5.388 12 C 0.405 3.595 13 O -0.519 6.519 14 N -0.364 5.364 15 C 0.003 3.997 16 C -0.078 4.078 17 N -0.262 5.262 18 C 0.081 3.919 19 C -0.558 4.558 20 H 0.090 0.910 21 C -0.200 4.200 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.181 1.181 27 C -0.085 4.085 28 C 0.022 3.978 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.029 0.971 46 H 0.108 0.892 47 H 0.022 0.978 48 H -0.025 1.025 49 H 0.072 0.928 50 H 0.100 0.900 51 H 0.030 0.970 52 H 0.102 0.898 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.541 -21.007 -16.128 29.304 hybrid contribution -1.360 1.318 0.588 1.983 sum 11.181 -19.689 -15.541 27.463 Atomic orbital electron populations 1.21796 0.92226 1.03342 1.02648 1.22418 0.97403 0.96017 0.91443 0.94563 1.22820 0.80177 1.00843 0.97055 1.87974 1.21690 1.78912 1.44224 1.22814 0.99867 0.95707 0.83178 1.22946 0.87730 1.00295 1.00885 1.62634 1.08825 1.51262 1.01560 1.22486 1.02552 0.89124 0.93784 1.21889 0.98434 0.95284 0.86111 1.44981 1.59732 1.08364 1.25744 1.15991 0.79216 0.82633 0.81627 1.90864 1.51191 1.62839 1.47024 1.47409 1.57040 1.14438 1.17489 1.21876 0.91551 0.93811 0.92426 1.22382 0.95995 0.90909 0.98560 1.61971 1.29545 1.03513 1.31163 1.19388 0.86022 0.92992 0.93484 1.21450 1.14442 1.11003 1.08867 0.91005 1.25970 0.96813 0.95675 1.01500 1.70104 1.24069 1.22098 1.41475 0.85337 0.76919 0.79337 0.78735 1.20113 1.21294 1.18130 1.22442 0.95565 0.98199 0.92341 1.21480 0.95583 0.79963 1.00813 0.92393 0.91154 0.90660 0.87677 0.91318 0.87141 0.91352 0.94903 0.87547 0.87940 0.88299 0.93366 0.93075 0.75001 0.87399 0.89302 0.97067 0.89175 0.97761 1.02464 0.92792 0.89957 0.97040 0.89845 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.89 71.98 0.64 -1.06 16 2 C 0.04 0.52 2.05 44.93 0.09 0.61 16 3 H 0.04 0.70 6.41 -2.39 -0.02 0.68 16 4 C 0.07 0.94 6.29 72.01 0.45 1.39 16 5 O -0.41 -7.24 10.83 -148.98 -1.61 -8.85 16 6 C 0.06 0.76 7.01 72.01 0.50 1.26 16 7 C 0.01 0.12 5.33 86.31 0.46 0.58 16 8 N -0.52 -6.88 4.75 -870.02 -4.13 -11.01 16 9 C 0.05 0.59 4.97 86.30 0.43 1.02 16 10 C 0.11 2.06 4.97 86.38 0.43 2.49 16 11 N -0.73 -15.10 5.46 -478.54 -2.62 -17.71 16 12 C 0.70 20.99 8.31 179.06 1.49 22.47 16 13 O -0.64 -24.24 15.80 -4.01 -0.06 -24.30 16 14 N -0.63 -18.11 3.01 -835.95 -2.52 -20.63 16 15 C 0.13 3.13 6.53 86.35 0.56 3.69 16 16 C 0.05 1.76 5.46 86.37 0.47 2.23 16 17 N -0.54 -22.19 4.62 -899.66 -4.15 -26.34 16 18 C 0.21 10.81 4.73 85.56 0.40 11.21 16 19 C -0.52 -28.08 8.41 25.60 0.22 -27.87 16 20 H 0.07 3.69 7.11 -2.91 -0.02 3.67 16 21 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 22 N -0.94 -55.64 13.29 21.45 0.28 -55.36 16 23 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 27 C 0.04 1.60 5.62 86.38 0.49 2.09 16 28 C 0.15 4.50 6.61 86.35 0.57 5.07 16 29 H 0.06 0.76 6.43 -2.38 -0.02 0.74 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 1.04 8.14 -2.38 -0.02 1.03 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.03 0.54 6.59 -2.39 -0.02 0.53 16 37 H 0.11 0.98 8.12 -2.39 -0.02 0.96 16 38 H 0.10 0.93 8.11 -2.39 -0.02 0.92 16 39 H 0.10 1.06 6.40 -2.39 -0.02 1.05 16 40 H 0.05 1.12 6.42 -2.39 -0.02 1.10 16 41 H 0.05 1.11 6.61 -2.39 -0.02 1.10 16 42 H 0.41 6.05 6.01 -92.71 -0.56 5.49 16 43 H 0.11 1.83 5.74 -2.39 -0.01 1.82 16 44 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.09 3.27 6.67 -2.38 -0.02 3.26 16 47 H 0.00 0.24 7.97 -2.39 -0.02 0.22 16 48 H -0.04 -2.44 8.13 -2.39 -0.02 -2.46 16 49 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 50 H 0.08 2.96 7.99 -2.39 -0.02 2.94 16 51 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 52 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 53 H 0.09 2.75 7.04 -2.39 -0.02 2.74 16 Total: -1.00 -72.70 400.72 -4.77 -77.46 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.34 Total: 16.55 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 7.67 Total: 25.56 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -13.13 Total: -131.04 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.68 Total: -33.16 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -72.70 -4.77 -77.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583179.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.332 kcal (2) G-P(sol) polarization free energy of solvation -72.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds