Wall clock time and date at job start Sat Apr 11 2020 06:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.52996 * 109.46937 * 119.99930 * 2 1 3 5 5 C 1.52998 * 109.46978 * 184.99830 * 4 2 1 6 6 N 1.46906 * 109.47281 * 179.97438 * 5 4 2 7 7 C 1.46898 * 110.99519 * 66.04657 * 6 5 4 8 8 C 1.46895 * 111.00211 * 190.00462 * 6 5 4 9 9 N 1.46504 * 109.46959 * 239.99888 * 2 1 3 10 10 C 1.34778 * 120.00052 * 85.00493 * 9 2 1 11 11 O 1.21347 * 119.99866 * 359.97438 * 10 9 2 12 12 C 1.49450 * 119.99986 * 179.97438 * 10 9 2 13 13 O 1.21351 * 119.99968 * 353.51357 * 12 10 9 14 14 N 1.34771 * 119.99907 * 173.51621 * 12 10 9 15 15 C 1.47078 * 120.87911 * 181.26230 * 14 12 10 16 16 C 1.53699 * 108.28019 * 128.75477 * 15 14 12 17 17 N 1.46908 * 109.25681 * 54.07765 * 16 15 14 18 18 C 1.46897 * 111.00103 * 172.61252 * 17 16 15 19 19 C 1.50707 * 109.47043 * 294.30163 * 18 17 16 20 20 H 1.07997 * 119.99889 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00087 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00035 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00077 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47236 * 60.00332 * 23 21 19 25 25 H 1.48506 * 109.47245 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47005 * 300.00006 * 23 21 19 27 27 C 1.46897 * 111.26939 * 296.76143 * 17 16 15 28 28 C 1.47079 * 120.88393 * 1.53583 * 14 12 10 29 29 H 1.09006 * 109.47088 * 60.00441 * 1 2 3 30 30 H 1.09001 * 109.47410 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47340 * 300.00543 * 1 2 3 32 32 H 1.09001 * 109.47224 * 65.00165 * 4 2 1 33 33 H 1.08996 * 109.47385 * 304.99943 * 4 2 1 34 34 H 1.09001 * 109.47323 * 60.00400 * 5 4 2 35 35 H 1.08996 * 109.47626 * 300.00007 * 5 4 2 36 36 H 1.08999 * 109.47133 * 60.00714 * 7 6 5 37 37 H 1.09008 * 109.46996 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47520 * 299.99740 * 7 6 5 39 39 H 1.08997 * 109.47253 * 59.99842 * 8 6 5 40 40 H 1.09000 * 109.47175 * 180.02562 * 8 6 5 41 41 H 1.09004 * 109.46972 * 300.00103 * 8 6 5 42 42 H 0.97000 * 120.00048 * 264.99569 * 9 2 1 43 43 H 1.08999 * 109.62815 * 248.51822 * 15 14 12 44 44 H 1.08992 * 109.63326 * 9.10379 * 15 14 12 45 45 H 1.09004 * 109.64745 * 294.07985 * 16 15 14 46 46 H 1.08994 * 109.42554 * 173.94451 * 16 15 14 47 47 H 1.09000 * 109.47191 * 54.30211 * 18 17 16 48 48 H 1.09001 * 109.46747 * 174.30521 * 18 17 16 49 49 H 0.97001 * 120.00087 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.49661 * 303.14571 * 27 17 16 51 51 H 1.08993 * 109.49607 * 183.05913 * 27 17 16 52 52 H 1.09004 * 109.62461 * 350.90260 * 28 14 12 53 53 H 1.09002 * 109.62682 * 111.47631 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0544 -1.3053 2.5135 7 6 3.8098 -2.7510 2.4239 8 6 5.4788 -1.0252 2.7383 9 7 2.0183 -0.6907 -1.1962 10 6 2.1471 -0.0183 -2.3572 11 8 1.8582 1.1590 -2.4118 12 6 2.6458 -0.7227 -3.5773 13 8 3.0457 -1.8657 -3.4972 14 7 2.6514 -0.0886 -4.7665 15 6 3.1121 -0.7724 -5.9844 16 6 2.0357 -0.6036 -7.0685 17 7 1.7352 0.8248 -7.2346 18 6 0.8416 1.0451 -8.3795 19 6 1.5552 0.6707 -9.6531 20 1 2.5708 0.3053 -9.6156 21 6 0.9112 0.7938 -10.8659 22 7 -0.3258 1.2383 -10.9115 23 14 1.7954 0.3291 -12.4443 24 1 2.1866 -1.1023 -12.3896 25 1 0.8921 0.5519 -13.6018 26 1 3.0106 1.1690 -12.5966 27 6 1.1676 1.3963 -6.0062 28 6 2.2027 1.3075 -4.8797 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.7516 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1369 34 1 3.8532 0.4369 1.3574 35 1 3.9994 -1.0728 0.4260 36 1 4.3267 -3.1537 1.5529 37 1 4.1815 -3.2389 3.3251 38 1 2.7395 -2.9332 2.3278 39 1 5.6217 0.0473 2.8706 40 1 5.8156 -1.5500 3.6323 41 1 6.0561 -1.3653 1.8786 42 1 2.2491 -1.6318 -1.1526 43 1 4.0485 -0.3282 -6.3218 44 1 3.2603 -1.8319 -5.7757 45 1 1.1305 -1.1335 -6.7719 46 1 2.4033 -1.0099 -8.0107 47 1 -0.0504 0.4286 -8.2682 48 1 0.5545 2.0958 -8.4193 49 1 -0.7788 1.3252 -11.7648 50 1 0.2746 0.8386 -5.7243 51 1 0.9058 2.4403 -6.1780 52 1 1.7495 1.6237 -3.9402 53 1 3.0535 1.9477 -5.1129 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602238089.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:36 Heat of formation + Delta-G solvation = -62.503525 kcal Electronic energy + Delta-G solvation = -30498.026897 eV Core-core repulsion = 26404.647033 eV Total energy + Delta-G solvation = -4093.379864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.12610 -40.25920 -39.03760 -38.80908 -37.07286 -35.93443 -34.40059 -32.86786 -32.19328 -30.30836 -30.12885 -28.47890 -27.64543 -26.16693 -25.45392 -24.47662 -23.72361 -22.47442 -21.95101 -21.67341 -20.69146 -18.85511 -18.41336 -18.25730 -17.34965 -17.17470 -16.67947 -16.47057 -16.26109 -16.09164 -16.07214 -15.76771 -15.55595 -15.48915 -15.25593 -15.03979 -14.50432 -14.34270 -14.12378 -14.04409 -13.80444 -13.58560 -13.25029 -13.18954 -12.98464 -12.83238 -12.78912 -12.69393 -12.58221 -12.54886 -12.36667 -12.26403 -12.23293 -12.04755 -11.91634 -11.75793 -11.65558 -11.37638 -10.62723 -10.38112 -10.20024 -9.93998 -9.34162 -9.10036 -8.21074 -6.31598 0.25535 1.20444 1.42012 1.45092 1.52829 2.03988 2.35178 2.41271 2.94731 3.10830 3.18135 3.23735 3.79125 3.91489 3.95760 4.00261 4.09281 4.18766 4.26773 4.27383 4.35085 4.38572 4.45468 4.49532 4.53273 4.61849 4.65300 4.70822 4.75878 4.80096 4.86454 4.88725 4.91439 4.97552 5.00426 5.02763 5.08621 5.08843 5.19143 5.20238 5.26616 5.32464 5.48646 5.62190 5.91460 6.01443 6.04584 6.06288 6.14477 6.26158 6.54341 6.61310 6.83224 6.86573 7.38107 8.89837 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.001999 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.204161 B =14001.081063 C =14552.878804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.112 4.112 5 C 0.051 3.949 6 N -0.555 5.555 7 C 0.017 3.983 8 C 0.021 3.979 9 N -0.680 5.680 10 C 0.517 3.483 11 O -0.521 6.521 12 C 0.501 3.499 13 O -0.549 6.549 14 N -0.577 5.577 15 C 0.121 3.879 16 C 0.056 3.944 17 N -0.540 5.540 18 C 0.208 3.792 19 C -0.524 4.524 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.934 5.934 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.268 1.268 27 C 0.041 3.959 28 C 0.073 3.927 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.020 0.980 42 H 0.416 0.584 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.013 0.987 46 H 0.086 0.914 47 H -0.041 1.041 48 H 0.008 0.992 49 H 0.264 0.736 50 H 0.016 0.984 51 H 0.084 0.916 52 H 0.161 0.839 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 -5.457 29.525 30.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.150 4.150 5 C -0.077 4.077 6 N -0.279 5.279 7 C -0.131 4.131 8 C -0.127 4.127 9 N -0.332 5.332 10 C 0.298 3.702 11 O -0.399 6.399 12 C 0.284 3.716 13 O -0.428 6.428 14 N -0.309 5.309 15 C -0.001 4.001 16 C -0.073 4.073 17 N -0.265 5.265 18 C 0.082 3.918 19 C -0.563 4.563 20 H 0.085 0.915 21 C -0.197 4.197 22 N -0.575 5.575 23 Si 0.796 3.204 24 H -0.192 1.192 25 H -0.210 1.210 26 H -0.192 1.192 27 C -0.088 4.088 28 C -0.047 4.047 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.039 0.961 42 H 0.253 0.747 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.031 0.969 46 H 0.104 0.896 47 H -0.023 1.023 48 H 0.026 0.974 49 H 0.073 0.927 50 H 0.034 0.966 51 H 0.103 0.897 52 H 0.177 0.823 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.131 -4.765 29.756 30.967 hybrid contribution -0.200 -1.173 -2.029 2.352 sum 6.931 -5.938 27.726 29.189 Atomic orbital electron populations 1.22157 0.93794 1.02990 1.02993 1.21271 0.94956 0.97483 0.82571 0.89337 1.21839 0.94477 1.01970 0.96674 1.22181 0.95816 0.99255 0.90442 1.62051 1.17867 1.10190 1.37747 1.22516 1.02576 0.87122 1.00881 1.22426 0.87075 1.02430 1.00737 1.45973 1.63815 1.15037 1.08389 1.19923 0.78696 0.86695 0.84894 1.90341 1.50719 1.16181 1.82689 1.20325 0.80033 0.86280 0.84999 1.90716 1.48420 1.17975 1.85696 1.48231 1.60789 1.14864 1.07010 1.21977 0.97227 0.98791 0.82109 1.22374 0.96779 0.89085 0.99088 1.62057 1.46152 1.14554 1.03769 1.19387 0.89452 0.94579 0.88411 1.21423 1.00118 1.43413 0.91299 0.91483 1.25936 0.95635 0.95162 1.02994 1.70086 1.12962 1.47464 1.26946 0.85409 0.78232 0.79084 0.77723 1.19169 1.21046 1.19247 1.22504 0.95516 1.00408 0.90330 1.23328 0.98572 0.80113 1.02732 0.93806 0.91530 0.89186 0.90085 0.87830 0.90829 0.95552 0.96053 0.90725 0.90203 0.91027 0.90435 0.96146 0.74664 0.89349 0.88237 0.96877 0.89579 1.02302 0.97367 0.92699 0.96568 0.89745 0.82303 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.48 71.98 0.68 -1.30 16 2 C 0.14 1.81 2.57 44.99 0.12 1.92 16 3 H 0.09 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.11 -1.01 4.68 30.59 0.14 -0.87 16 5 C 0.05 0.61 4.84 86.30 0.42 1.03 16 6 N -0.55 -6.73 5.02 -948.84 -4.76 -11.50 16 7 C 0.02 0.17 9.32 127.69 1.19 1.36 16 8 C 0.02 0.24 9.57 127.69 1.22 1.46 16 9 N -0.68 -11.58 4.52 -443.86 -2.01 -13.58 16 10 C 0.52 12.34 7.77 87.27 0.68 13.02 16 11 O -0.52 -13.81 12.70 -3.24 -0.04 -13.85 16 12 C 0.50 14.32 7.77 87.27 0.68 15.00 16 13 O -0.55 -17.04 15.95 -3.25 -0.05 -17.09 16 14 N -0.58 -17.74 3.00 -818.63 -2.46 -20.20 16 15 C 0.12 3.86 6.62 86.50 0.57 4.43 16 16 C 0.06 2.19 5.47 86.54 0.47 2.66 16 17 N -0.54 -23.54 4.62 -898.87 -4.15 -27.69 16 18 C 0.21 11.16 4.72 85.56 0.40 11.56 16 19 C -0.52 -29.49 8.41 25.60 0.22 -29.28 16 20 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 21 C 0.00 0.05 5.46 84.65 0.46 0.51 16 22 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 23 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.04 1.53 5.62 86.38 0.49 2.01 16 28 C 0.07 2.24 6.35 86.35 0.55 2.79 16 29 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.63 6.55 -2.39 -0.02 0.61 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 35 H 0.03 0.38 7.73 -2.39 -0.02 0.36 16 36 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 0.65 8.12 -2.38 -0.02 0.63 16 38 H 0.08 0.66 6.47 -2.39 -0.02 0.64 16 39 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 40 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 41 H 0.02 0.24 8.14 -2.38 -0.02 0.22 16 42 H 0.42 6.39 8.09 -92.71 -0.75 5.64 16 43 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.10 3.00 7.07 -2.39 -0.02 2.98 16 45 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.09 3.57 6.67 -2.39 -0.02 3.55 16 47 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 48 H 0.01 0.47 7.97 -2.39 -0.02 0.46 16 49 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.08 3.05 7.99 -2.39 -0.02 3.03 16 52 H 0.16 4.62 3.92 -75.38 -0.30 4.33 16 53 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -67.59 416.07 -3.02 -70.61 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.15 Total: 16.94 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: 8.29 Total: 26.31 kcal Atomic # 7 Polarization: -115.90 SS G_CDS: -13.09 Total: -128.99 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.09 Total: -30.94 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.59 -3.02 -70.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602238089.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.102 kcal (2) G-P(sol) polarization free energy of solvation -67.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds