Wall clock time and date at job start Sat Apr 11 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47168 * 2 1 4 4 C 1.53006 * 109.47301 * 120.00551 * 2 1 3 5 5 N 1.46499 * 109.46988 * 174.99757 * 4 2 1 6 6 C 1.34779 * 119.99772 * 179.97438 * 5 4 2 7 7 O 1.21538 * 120.00177 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99947 * 180.02562 * 6 5 4 9 9 C 1.34777 * 119.99953 * 180.02562 * 8 6 5 10 10 O 1.21230 * 119.99789 * 359.97438 * 9 8 6 11 11 C 1.50699 * 120.00032 * 179.97438 * 9 8 6 12 12 H 1.09004 * 109.47315 * 329.36818 * 11 9 8 13 13 C 1.52999 * 109.46949 * 89.36379 * 11 9 8 14 14 N 1.46896 * 109.47301 * 209.36734 * 11 9 8 15 15 C 1.46951 * 111.00165 * 51.53491 * 14 11 9 16 16 C 1.53046 * 109.38382 * 176.82466 * 15 14 11 17 17 N 1.46956 * 109.36560 * 58.39348 * 16 15 14 18 18 C 1.46905 * 111.00110 * 176.81579 * 17 16 15 19 19 C 1.50703 * 109.46970 * 190.00042 * 18 17 16 20 20 H 1.08000 * 119.99604 * 359.97438 * 19 18 17 21 21 C 1.37868 * 119.99998 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00200 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00347 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46941 * 59.99654 * 23 21 19 25 25 H 1.48494 * 109.47208 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46888 * 299.99947 * 23 21 19 27 27 C 1.46958 * 110.87840 * 300.67648 * 17 16 15 28 28 C 1.46961 * 111.01568 * 287.72640 * 14 11 9 29 29 H 1.09003 * 109.47056 * 299.99516 * 1 2 3 30 30 H 1.08993 * 109.47399 * 59.99867 * 1 2 3 31 31 H 1.09007 * 109.47133 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47056 * 240.00484 * 2 1 3 33 33 H 1.09003 * 109.46737 * 60.00289 * 3 2 1 34 34 H 1.08999 * 109.46942 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47069 * 300.00335 * 3 2 1 36 36 H 1.08999 * 109.46988 * 54.99623 * 4 2 1 37 37 H 1.08998 * 109.46523 * 294.99876 * 4 2 1 38 38 H 0.97002 * 120.00386 * 0.02562 * 5 4 2 39 39 H 0.97003 * 120.00117 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.47301 * 300.00031 * 13 11 9 41 41 H 1.09003 * 109.47268 * 60.00052 * 13 11 9 42 42 H 1.09000 * 109.47225 * 180.02562 * 13 11 9 43 43 H 1.08998 * 109.48600 * 56.84651 * 15 14 11 44 44 H 1.08997 * 109.48935 * 296.80326 * 15 14 11 45 45 H 1.08999 * 109.49005 * 178.35998 * 16 15 14 46 46 H 1.09005 * 109.48818 * 298.42473 * 16 15 14 47 47 H 1.09003 * 109.46691 * 309.99329 * 18 17 16 48 48 H 1.08998 * 109.47106 * 69.99785 * 18 17 16 49 49 H 0.96995 * 120.00251 * 179.97438 * 22 21 19 50 50 H 1.08998 * 109.49310 * 179.28757 * 27 17 16 51 51 H 1.08997 * 109.49244 * 299.33772 * 27 17 16 52 52 H 1.09000 * 109.47263 * 63.19448 * 28 14 11 53 53 H 1.09002 * 109.50850 * 303.15666 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1910 7 8 3.5688 -1.8846 3.1417 8 7 5.5164 -1.5248 2.1372 9 6 6.1894 -2.1272 3.1375 10 8 5.5865 -2.5821 4.0858 11 6 7.6913 -2.2354 3.0771 12 1 8.0093 -2.3011 2.0365 13 6 8.3181 -0.9991 3.7248 14 7 8.1249 -3.4393 3.7985 15 6 7.3898 -4.6244 3.3352 16 6 7.9244 -5.8663 4.0523 17 7 7.7761 -5.6924 5.5040 18 6 8.2093 -6.8965 6.2254 19 6 7.8184 -6.7807 7.6762 20 1 7.3003 -5.9005 8.0272 21 6 8.1221 -7.7984 8.5553 22 7 8.7525 -8.8705 8.1278 23 14 7.6381 -7.6547 10.3539 24 1 6.1633 -7.5170 10.4601 25 1 8.0749 -8.8725 11.0828 26 1 8.2909 -6.4606 10.9482 27 6 8.5117 -4.5076 5.9674 28 6 7.9770 -3.2657 5.2503 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6054 -1.7199 1.2950 37 1 1.7517 -0.1585 2.1369 38 1 3.9825 -0.4622 0.4318 39 1 5.9988 -1.1605 1.3785 40 1 7.9963 -0.1058 3.1894 41 1 8.0001 -0.9334 4.7653 42 1 9.4044 -1.0771 3.6807 43 1 7.5254 -4.7389 2.2597 44 1 6.3295 -4.5044 3.5573 45 1 7.3608 -6.7423 3.7315 46 1 8.9781 -6.0019 3.8080 47 1 7.7308 -7.7733 5.7891 48 1 9.2919 -6.9968 6.1477 49 1 8.9665 -9.5864 8.7463 50 1 8.3762 -4.3931 7.0429 51 1 9.5720 -4.6279 5.7453 52 1 6.9234 -3.1300 5.4945 53 1 8.5404 -2.3896 5.5714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173663.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:28 Heat of formation + Delta-G solvation = -81.683325 kcal Electronic energy + Delta-G solvation = -30741.369623 eV Core-core repulsion = 26647.158061 eV Total energy + Delta-G solvation = -4094.211562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50678 -40.77813 -39.22043 -37.67466 -36.66859 -35.83373 -34.72681 -34.11645 -32.44444 -31.67533 -29.28859 -28.04613 -27.72929 -26.71402 -25.58096 -24.17060 -23.50375 -22.26434 -21.66925 -21.30003 -20.87014 -19.54265 -18.51717 -18.35749 -17.49858 -17.21548 -16.79324 -16.58458 -16.19471 -16.02276 -15.91049 -15.68312 -15.52313 -15.36292 -15.18717 -14.96607 -14.44063 -14.38339 -13.98019 -13.79411 -13.52484 -13.36123 -13.31893 -13.21627 -12.91906 -12.84252 -12.73651 -12.57306 -12.42864 -12.23182 -12.15685 -12.05678 -11.97476 -11.87152 -11.81653 -11.65024 -11.43932 -11.25107 -11.20482 -11.08971 -10.63738 -10.19605 -9.32267 -8.98059 -8.22936 -6.33318 0.97207 1.31179 1.36970 1.41409 1.49358 2.19225 2.38004 2.73760 2.91160 3.08277 3.29597 3.66973 3.75511 3.85890 3.93325 3.94117 4.11289 4.17460 4.21768 4.34062 4.46890 4.50820 4.56638 4.59631 4.65450 4.70408 4.76665 4.80247 4.82693 4.90243 4.97137 4.98737 5.01525 5.03639 5.04790 5.11249 5.21865 5.22695 5.24819 5.29147 5.32759 5.40190 5.46131 5.53032 5.61337 5.85379 5.92583 6.03676 6.34253 6.55409 6.63366 6.81736 7.11356 7.34495 7.35929 8.87903 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.002195 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.349582 B =12755.195214 C =13571.588778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.136 3.864 5 N -0.714 5.714 6 C 0.684 3.316 7 O -0.594 6.594 8 N -0.670 5.670 9 C 0.484 3.516 10 O -0.511 6.511 11 C 0.072 3.928 12 H 0.155 0.845 13 C -0.144 4.144 14 N -0.504 5.504 15 C 0.057 3.943 16 C 0.058 3.942 17 N -0.553 5.553 18 C 0.211 3.789 19 C -0.526 4.526 20 H 0.055 0.945 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.970 3.030 24 H -0.274 1.274 25 H -0.277 1.277 26 H -0.265 1.265 27 C 0.073 3.927 28 C 0.050 3.950 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.418 0.582 39 H 0.434 0.566 40 H 0.098 0.902 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.108 0.892 44 H 0.028 0.972 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.001 0.999 48 H -0.034 1.034 49 H 0.266 0.734 50 H 0.061 0.939 51 H 0.024 0.976 52 H 0.044 0.956 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.735 25.972 -25.350 36.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.206 4.206 4 C 0.012 3.988 5 N -0.372 5.372 6 C 0.384 3.616 7 O -0.470 6.470 8 N -0.339 5.339 9 C 0.270 3.730 10 O -0.381 6.381 11 C -0.040 4.040 12 H 0.172 0.828 13 C -0.201 4.201 14 N -0.227 5.227 15 C -0.071 4.071 16 C -0.070 4.070 17 N -0.278 5.278 18 C 0.085 3.915 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.196 4.196 22 N -0.572 5.572 23 Si 0.794 3.206 24 H -0.199 1.199 25 H -0.202 1.202 26 H -0.190 1.190 27 C -0.056 4.056 28 C -0.078 4.078 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.257 0.743 39 H 0.274 0.726 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.019 0.981 48 H -0.017 1.017 49 H 0.074 0.926 50 H 0.079 0.921 51 H 0.042 0.958 52 H 0.062 0.938 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.563 25.102 -23.848 35.441 hybrid contribution -0.025 -0.510 0.616 0.800 sum -7.588 24.592 -23.232 34.671 Atomic orbital electron populations 1.21793 0.93756 1.02272 1.02774 1.21311 0.96869 0.96958 0.96368 1.21885 1.01567 0.94716 1.02420 1.21428 0.77731 1.00274 0.99377 1.45084 1.08139 1.61209 1.22800 1.16577 0.82171 0.79386 0.83432 1.91080 1.68392 1.52099 1.35451 1.44190 1.06293 1.57564 1.25868 1.23221 0.92832 0.75845 0.81066 1.90873 1.71082 1.43070 1.33075 1.22384 0.85046 0.93000 1.03561 0.82760 1.21951 1.03053 0.94471 1.00622 1.62746 1.53037 1.02085 1.04839 1.22256 0.95754 0.89373 0.99759 1.22079 0.98861 0.97759 0.88317 1.62157 1.57188 1.04599 1.03870 1.19330 0.91596 0.87299 0.93316 1.21390 1.37053 1.03976 0.94042 0.92644 1.25914 0.94992 0.94682 1.03979 1.70073 1.41809 1.08264 1.37060 0.85427 0.78674 0.77874 0.78575 1.19893 1.20214 1.19022 1.21935 0.94505 0.90016 0.99106 1.22423 1.00706 0.97287 0.87374 0.92795 0.90659 0.92677 0.88871 0.93308 0.91671 0.91074 0.93064 0.92966 0.74320 0.72595 0.88354 0.93511 0.88448 0.87422 0.95350 0.91741 0.94902 0.98092 1.01668 0.92553 0.92090 0.95791 0.93819 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.19 71.98 0.66 -0.43 16 2 C -0.10 -0.66 2.96 -10.79 -0.03 -0.69 16 3 C -0.15 -0.73 9.07 71.98 0.65 -0.08 16 4 C 0.14 1.94 5.07 86.38 0.44 2.38 16 5 N -0.71 -9.18 5.29 -478.58 -2.53 -11.71 16 6 C 0.68 15.96 8.50 179.05 1.52 17.48 16 7 O -0.59 -22.64 14.74 18.93 0.28 -22.37 16 8 N -0.67 -10.97 5.24 -440.53 -2.31 -13.27 16 9 C 0.48 12.07 5.89 87.66 0.52 12.59 16 10 O -0.51 -20.17 10.87 19.89 0.22 -19.95 16 11 C 0.07 1.31 3.00 44.17 0.13 1.44 16 12 H 0.16 1.33 8.14 -2.38 -0.02 1.31 16 13 C -0.14 -1.95 8.50 71.98 0.61 -1.34 16 14 N -0.50 -14.26 4.80 -874.88 -4.20 -18.46 16 15 C 0.06 1.84 5.07 86.31 0.44 2.27 16 16 C 0.06 2.37 5.61 86.31 0.48 2.85 16 17 N -0.55 -27.46 4.70 -900.26 -4.23 -31.69 16 18 C 0.21 12.35 4.72 85.56 0.40 12.75 16 19 C -0.53 -32.49 8.47 25.60 0.22 -32.27 16 20 H 0.06 3.43 7.13 -2.91 -0.02 3.41 16 21 C 0.00 0.15 5.46 84.65 0.46 0.61 16 22 N -0.93 -58.75 13.29 21.44 0.28 -58.47 16 23 Si 0.97 47.27 29.54 68.60 2.03 49.29 16 24 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 C 0.07 3.21 5.43 86.31 0.47 3.67 16 28 C 0.05 1.75 4.70 86.31 0.41 2.16 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.06 0.18 7.18 -2.39 -0.02 0.16 16 35 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.42 1.58 7.67 -92.71 -0.71 0.87 16 39 H 0.43 1.66 8.71 -92.71 -0.81 0.86 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.05 0.89 6.25 -2.39 -0.01 0.88 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.03 1.12 5.91 -2.39 -0.01 1.11 16 45 H 0.06 2.64 8.07 -2.39 -0.02 2.62 16 46 H 0.03 1.30 8.14 -2.38 -0.02 1.29 16 47 H 0.00 0.06 8.03 -2.39 -0.02 0.04 16 48 H -0.03 -2.13 8.12 -2.39 -0.02 -2.15 16 49 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 50 H 0.06 2.93 6.79 -2.39 -0.02 2.91 16 51 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.04 1.85 5.70 -2.39 -0.01 1.84 16 53 H 0.10 2.96 5.99 -2.39 -0.01 2.94 16 Total: -1.00 -93.49 409.26 -3.69 -97.18 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -0.61 Total: 6.05 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 7.38 Total: 23.40 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -12.99 Total: -133.61 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: 0.50 Total: -42.32 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -93.49 -3.69 -97.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173663.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.496 kcal (2) G-P(sol) polarization free energy of solvation -93.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds