Wall clock time and date at job start Sat Apr 11 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46873 * 2 1 4 4 C 1.52992 * 109.47484 * 120.00497 * 2 1 3 5 5 N 1.46502 * 109.47679 * 64.99466 * 4 2 1 6 6 C 1.34770 * 120.00228 * 180.02562 * 5 4 2 7 7 O 1.21545 * 119.99981 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00099 * 180.02562 * 6 5 4 9 9 C 1.34769 * 119.99879 * 179.97438 * 8 6 5 10 10 O 1.21229 * 120.00487 * 0.02562 * 9 8 6 11 11 C 1.50707 * 119.99849 * 180.02562 * 9 8 6 12 12 H 1.09004 * 109.47016 * 46.38050 * 11 9 8 13 13 C 1.52997 * 109.46872 * 286.38386 * 11 9 8 14 14 N 1.46902 * 109.47051 * 166.38255 * 11 9 8 15 15 C 1.46950 * 110.99942 * 72.29059 * 14 11 9 16 16 C 1.53051 * 109.36361 * 183.18878 * 15 14 11 17 17 N 1.46964 * 109.36405 * 301.59381 * 16 15 14 18 18 C 1.46892 * 111.00026 * 183.18754 * 17 16 15 19 19 C 1.50703 * 109.47049 * 169.99846 * 18 17 16 20 20 H 1.08003 * 119.99960 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00106 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00296 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 120.00116 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46784 * 89.99626 * 23 21 19 25 25 H 1.48491 * 109.46996 * 210.00010 * 23 21 19 26 26 H 1.48499 * 109.46952 * 330.00028 * 23 21 19 27 27 C 1.46951 * 110.87660 * 59.31822 * 17 16 15 28 28 C 1.46961 * 110.99642 * 196.08652 * 14 11 9 29 29 H 1.08999 * 109.47105 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46659 * 299.99708 * 1 2 3 31 31 H 1.08991 * 109.47527 * 59.99567 * 1 2 3 32 32 H 1.09008 * 109.46562 * 240.00015 * 2 1 3 33 33 H 1.09007 * 109.46820 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46975 * 300.00147 * 3 2 1 35 35 H 1.08996 * 109.47499 * 60.00213 * 3 2 1 36 36 H 1.09006 * 109.46958 * 304.99715 * 4 2 1 37 37 H 1.08994 * 109.47500 * 184.99811 * 4 2 1 38 38 H 0.97000 * 119.99574 * 0.02562 * 5 4 2 39 39 H 0.97000 * 119.99703 * 359.97438 * 8 6 5 40 40 H 1.08999 * 109.47366 * 59.99834 * 13 11 9 41 41 H 1.09003 * 109.47249 * 179.97438 * 13 11 9 42 42 H 1.08999 * 109.47601 * 299.99248 * 13 11 9 43 43 H 1.09001 * 109.49508 * 63.21701 * 15 14 11 44 44 H 1.09006 * 109.50657 * 303.16138 * 15 14 11 45 45 H 1.09005 * 109.49149 * 181.63115 * 16 15 14 46 46 H 1.08999 * 109.49233 * 61.56096 * 16 15 14 47 47 H 1.08999 * 109.47475 * 290.00291 * 18 17 16 48 48 H 1.09002 * 109.47406 * 50.00249 * 18 17 16 49 49 H 0.96993 * 120.00458 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.49052 * 60.65112 * 27 17 16 51 51 H 1.08998 * 109.48948 * 180.71381 * 27 17 16 52 52 H 1.08999 * 109.48804 * 296.77974 * 28 14 11 53 53 H 1.08998 * 109.49028 * 56.82013 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1905 6 6 1.9957 -2.9681 2.1910 7 8 2.6272 -2.5502 3.1418 8 7 1.6396 -4.2668 2.1368 9 6 1.9833 -5.1021 3.1371 10 8 2.6123 -4.6852 4.0859 11 6 1.5855 -6.5544 3.0763 12 1 1.8089 -6.9511 2.0858 13 6 0.0862 -6.6845 3.3515 14 7 2.3365 -7.3105 4.0874 15 6 1.8496 -7.0078 5.4404 16 6 2.7072 -7.7520 6.4667 17 7 2.6450 -9.1956 6.1985 18 6 3.3960 -9.9517 7.2096 19 6 3.1112 -11.4230 7.0506 20 1 2.4399 -11.7624 6.2757 21 6 3.7077 -12.3357 7.8944 22 7 4.5256 -11.9224 8.8378 23 14 3.3553 -14.1596 7.6969 24 1 4.3410 -14.7555 6.7598 25 1 3.4601 -14.8298 9.0178 26 1 1.9845 -14.3431 7.1561 27 6 3.1318 -9.4983 4.8454 28 6 2.2743 -8.7541 3.8191 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8898 32 1 1.8933 -0.5139 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6055 -0.2618 2.1369 37 1 3.1264 -0.6444 1.2950 38 1 1.1489 -2.4664 0.4315 39 1 1.1359 -4.6003 1.3779 40 1 -0.4710 -6.1234 2.6013 41 1 -0.2017 -7.7349 3.3071 42 1 -0.1372 -6.2879 4.3419 43 1 0.8117 -7.3275 5.5336 44 1 1.9171 -5.9347 5.6199 45 1 2.3299 -7.5519 7.4696 46 1 3.7403 -7.4124 6.3920 47 1 4.4631 -9.7719 7.0793 48 1 3.0920 -9.6283 8.2051 49 1 4.9450 -12.5645 9.4316 50 1 4.1697 -9.1786 4.7522 51 1 3.0640 -10.5713 4.6661 52 1 1.2412 -9.0936 3.8938 53 1 2.6512 -8.9542 2.8162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611173664.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:32 Heat of formation + Delta-G solvation = -82.418757 kcal Electronic energy + Delta-G solvation = -30233.947920 eV Core-core repulsion = 26139.704467 eV Total energy + Delta-G solvation = -4094.243453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.35328 -40.67701 -39.36181 -37.64368 -36.84603 -35.79360 -34.68360 -34.09226 -32.03951 -31.81818 -29.15160 -28.03108 -27.66233 -26.89198 -25.42736 -24.50547 -23.50777 -22.41753 -21.66499 -21.26108 -20.38155 -19.59615 -18.54194 -18.17232 -17.30150 -17.22988 -16.76665 -16.56430 -16.11144 -16.01331 -15.91015 -15.75525 -15.47085 -15.34555 -15.07119 -14.84940 -14.51532 -14.41814 -14.04991 -13.91550 -13.58195 -13.45524 -13.32107 -13.09494 -12.93819 -12.89978 -12.75538 -12.56915 -12.48199 -12.22417 -12.11721 -12.02083 -11.91969 -11.85607 -11.82096 -11.63202 -11.50399 -11.27579 -11.18536 -10.62153 -10.58616 -10.17310 -9.29833 -9.04985 -8.19677 -6.31239 1.04125 1.26344 1.42199 1.44709 1.56282 2.22135 2.41204 2.73203 3.03448 3.12344 3.28949 3.64028 3.77501 3.87792 3.95924 4.05005 4.11565 4.13055 4.20886 4.36239 4.38180 4.48829 4.58869 4.65739 4.67505 4.69654 4.71933 4.78098 4.84012 4.91007 4.97121 5.01058 5.01248 5.05368 5.06202 5.12258 5.19146 5.24396 5.25092 5.27222 5.29290 5.41546 5.47606 5.54425 5.63968 5.95839 6.00778 6.09251 6.33647 6.58293 6.59786 6.84846 7.14669 7.35715 7.38798 8.92088 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.038094 B = 0.001771 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.856432 B =15805.878755 C =16165.726582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.137 3.863 5 N -0.713 5.713 6 C 0.688 3.312 7 O -0.593 6.593 8 N -0.670 5.670 9 C 0.522 3.478 10 O -0.507 6.507 11 C 0.074 3.926 12 H 0.151 0.849 13 C -0.177 4.177 14 N -0.542 5.542 15 C 0.073 3.927 16 C 0.057 3.943 17 N -0.536 5.536 18 C 0.206 3.794 19 C -0.521 4.521 20 H 0.070 0.930 21 C -0.003 4.003 22 N -0.938 5.938 23 Si 0.977 3.023 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.260 1.260 27 C 0.064 3.936 28 C 0.073 3.927 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.418 0.582 39 H 0.434 0.566 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.006 0.994 47 H -0.046 1.046 48 H -0.001 1.001 49 H 0.264 0.736 50 H 0.007 0.993 51 H 0.078 0.922 52 H 0.057 0.943 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.970 21.282 -27.917 37.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.206 4.206 4 C 0.012 3.988 5 N -0.372 5.372 6 C 0.388 3.612 7 O -0.469 6.469 8 N -0.338 5.338 9 C 0.309 3.691 10 O -0.376 6.376 11 C -0.038 4.038 12 H 0.168 0.832 13 C -0.236 4.236 14 N -0.267 5.267 15 C -0.055 4.055 16 C -0.072 4.072 17 N -0.261 5.261 18 C 0.080 3.920 19 C -0.559 4.559 20 H 0.088 0.912 21 C -0.201 4.201 22 N -0.579 5.579 23 Si 0.801 3.199 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.184 1.184 27 C -0.064 4.064 28 C -0.054 4.054 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.257 0.743 39 H 0.274 0.726 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.024 0.976 47 H -0.028 1.028 48 H 0.017 0.983 49 H 0.073 0.927 50 H 0.025 0.975 51 H 0.097 0.903 52 H 0.075 0.925 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.904 21.863 -26.330 36.576 hybrid contribution 0.254 -0.936 0.343 1.029 sum -12.649 20.927 -25.987 35.683 Atomic orbital electron populations 1.21890 0.93834 1.02571 1.02370 1.21307 0.96986 0.96749 0.96476 1.21791 1.01271 0.94793 1.02727 1.21431 0.99456 0.78550 0.99323 1.45068 1.59906 1.09465 1.22762 1.16448 0.79868 0.81409 0.83452 1.91067 1.43965 1.76501 1.35400 1.43880 1.56107 1.08179 1.25665 1.21419 0.77753 0.88879 0.81071 1.90810 1.35975 1.77698 1.33137 1.21779 0.94247 0.88192 0.99586 0.83152 1.22392 0.92963 1.04840 1.03382 1.61891 1.55264 1.07570 1.01947 1.22094 0.96614 0.99357 0.87449 1.22092 0.97534 0.88667 0.98876 1.62278 1.55608 1.04969 1.03204 1.19380 0.89110 0.93648 0.89895 1.21442 1.26877 0.91287 1.16299 0.91180 1.26032 0.94696 1.04706 0.94630 1.70122 1.31401 1.36365 1.20000 0.85270 0.79120 0.78078 0.77448 1.19695 1.21004 1.18391 1.22063 0.95607 1.00291 0.88488 1.22206 0.99472 0.84880 0.98882 0.91687 0.93305 0.91206 0.88881 0.92560 0.90807 0.92783 0.92872 0.92809 0.74320 0.72620 0.87886 0.89744 0.93257 0.92749 0.90484 0.91757 0.97563 1.02817 0.98262 0.92743 0.97460 0.90331 0.92454 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.07 71.98 0.65 0.05 16 2 C -0.10 -0.53 2.96 -10.80 -0.03 -0.56 16 3 C -0.15 -0.89 9.19 71.98 0.66 -0.23 16 4 C 0.14 1.70 5.06 86.38 0.44 2.14 16 5 N -0.71 -8.00 5.29 -478.59 -2.53 -10.53 16 6 C 0.69 14.79 8.50 179.06 1.52 16.31 16 7 O -0.59 -21.11 14.74 18.90 0.28 -20.83 16 8 N -0.67 -10.15 5.24 -440.53 -2.31 -12.46 16 9 C 0.52 12.63 6.91 87.66 0.61 13.24 16 10 O -0.51 -19.20 12.73 19.89 0.25 -18.95 16 11 C 0.07 1.35 2.70 44.17 0.12 1.47 16 12 H 0.15 1.50 7.91 -2.39 -0.02 1.48 16 13 C -0.18 -2.40 8.29 71.98 0.60 -1.81 16 14 N -0.54 -15.70 4.40 -874.86 -3.85 -19.55 16 15 C 0.07 2.48 4.42 86.31 0.38 2.86 16 16 C 0.06 2.44 5.61 86.31 0.48 2.93 16 17 N -0.54 -24.92 4.70 -900.29 -4.23 -29.15 16 18 C 0.21 11.79 4.72 85.56 0.40 12.20 16 19 C -0.52 -30.26 8.47 25.60 0.22 -30.05 16 20 H 0.07 3.88 7.13 -2.91 -0.02 3.86 16 21 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 22 N -0.94 -58.59 13.29 21.45 0.28 -58.31 16 23 Si 0.98 44.72 29.54 68.60 2.03 46.74 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 C 0.06 2.56 5.43 86.31 0.47 3.03 16 28 C 0.07 2.02 5.40 86.31 0.47 2.48 16 29 H 0.06 0.13 7.18 -2.39 -0.02 0.11 16 30 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.42 1.01 7.67 -92.71 -0.71 0.30 16 39 H 0.43 1.29 8.71 -92.71 -0.81 0.48 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 1.10 7.02 -2.39 -0.02 1.09 16 42 H 0.05 0.92 6.39 -2.39 -0.02 0.91 16 43 H 0.05 1.70 6.41 -2.39 -0.02 1.69 16 44 H 0.08 2.83 5.97 -2.38 -0.01 2.81 16 45 H 0.06 2.76 8.07 -2.38 -0.02 2.74 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 47 H -0.05 -2.90 8.12 -2.39 -0.02 -2.92 16 48 H 0.00 -0.05 8.03 -2.39 -0.02 -0.07 16 49 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 50 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 51 H 0.08 3.25 6.79 -2.39 -0.02 3.23 16 52 H 0.06 1.47 7.02 -2.39 -0.02 1.45 16 53 H 0.11 2.25 8.02 -2.39 -0.02 2.23 16 Total: -1.00 -90.73 411.74 -3.24 -93.96 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -0.61 Total: 4.72 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 7.45 Total: 24.34 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -12.63 Total: -129.99 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: 0.53 Total: -39.78 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -90.73 -3.24 -93.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611173664.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.545 kcal (2) G-P(sol) polarization free energy of solvation -90.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds