Wall clock time and date at job start Sat Apr 11 2020 06:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.50699 * 109.47487 * 239.99914 * 2 1 3 5 5 O 1.21280 * 119.99479 * 264.84305 * 4 2 1 6 6 N 1.34773 * 120.00427 * 84.83661 * 4 2 1 7 7 C 1.46502 * 119.99794 * 4.75401 * 6 4 2 8 8 C 1.46495 * 120.00179 * 184.75277 * 6 4 2 9 9 C 1.50706 * 109.46885 * 90.00202 * 8 6 4 10 10 H 1.07998 * 120.00002 * 0.02562 * 9 8 6 11 11 C 1.37872 * 119.99883 * 179.97438 * 9 8 6 12 12 N 1.31518 * 120.00235 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 120.00201 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47087 * 89.99385 * 13 11 9 15 15 H 1.48495 * 109.47385 * 209.99513 * 13 11 9 16 16 H 1.48500 * 109.46649 * 329.99990 * 13 11 9 17 17 N 1.46901 * 109.47015 * 119.99311 * 2 1 3 18 18 C 1.46895 * 110.99996 * 180.55473 * 17 2 1 19 19 C 1.46900 * 111.00058 * 304.51284 * 17 2 1 20 20 C 1.50699 * 109.46978 * 169.99956 * 19 17 2 21 21 O 1.21287 * 120.00177 * 359.97438 * 20 19 17 22 22 N 1.34777 * 120.00036 * 179.72185 * 20 19 17 23 23 C 1.47081 * 120.88102 * 359.97438 * 22 20 19 24 24 C 1.53694 * 108.27705 * 128.75365 * 23 22 20 25 25 N 1.46897 * 109.25922 * 54.08401 * 24 23 22 26 26 C 1.46895 * 111.00193 * 172.60762 * 25 24 23 27 27 C 1.46903 * 111.26696 * 296.75613 * 25 24 23 28 28 C 1.47078 * 120.88133 * 180.27192 * 22 20 19 29 29 H 1.08997 * 109.47359 * 307.82338 * 1 2 3 30 30 H 1.08999 * 109.46931 * 67.82874 * 1 2 3 31 31 H 1.09004 * 109.46546 * 187.81845 * 1 2 3 32 32 H 1.09006 * 109.46714 * 93.49404 * 7 6 4 33 33 H 1.09000 * 109.47606 * 213.49875 * 7 6 4 34 34 H 1.09007 * 109.47129 * 333.50198 * 7 6 4 35 35 H 1.08999 * 109.47322 * 209.99797 * 8 6 4 36 36 H 1.08995 * 109.47382 * 330.00492 * 8 6 4 37 37 H 0.96998 * 119.99838 * 180.02562 * 12 11 9 38 38 H 1.08995 * 109.47025 * 189.49798 * 18 17 2 39 39 H 1.09000 * 109.47117 * 309.49931 * 18 17 2 40 40 H 1.08997 * 109.46888 * 69.49797 * 18 17 2 41 41 H 1.08995 * 109.47323 * 49.99556 * 19 17 2 42 42 H 1.08996 * 109.47024 * 289.99725 * 19 17 2 43 43 H 1.08997 * 109.62901 * 248.52155 * 23 22 20 44 44 H 1.09004 * 109.62870 * 9.10299 * 23 22 20 45 45 H 1.09003 * 109.65061 * 294.07897 * 24 23 22 46 46 H 1.08999 * 109.44580 * 173.96197 * 24 23 22 47 47 H 1.09000 * 109.47313 * 184.29797 * 26 25 24 48 48 H 1.09002 * 109.47330 * 304.29845 * 26 25 24 49 49 H 1.09002 * 109.47006 * 64.30167 * 26 25 24 50 50 H 1.08997 * 109.49283 * 303.14687 * 27 25 24 51 51 H 1.08997 * 109.51589 * 183.07530 * 27 25 24 52 52 H 1.08997 * 109.63119 * 350.89967 * 28 22 20 53 53 H 1.09008 * 109.62649 * 111.28405 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 8 2.3236 -1.8864 -1.1751 6 7 2.1581 -0.0390 -2.3922 7 6 1.9065 1.4036 -2.4354 8 6 2.5464 -0.7516 -3.6118 9 6 1.3110 -1.2434 -4.3211 10 1 0.3343 -1.0446 -3.9052 11 6 1.4275 -1.9463 -5.5015 12 7 0.3495 -2.3759 -6.1202 13 14 3.1168 -2.2896 -6.2213 14 1 3.6277 -3.5795 -5.6917 15 1 3.0182 -2.3663 -7.7010 16 1 4.0475 -1.1959 -5.8431 17 7 2.0197 -0.6924 1.1995 18 6 3.4881 -0.7005 1.2402 19 6 1.4626 -0.0912 2.4186 20 6 1.7837 -0.9668 3.6024 21 8 2.4141 -1.9911 3.4458 22 7 1.3747 -0.6092 4.8358 23 6 0.6143 0.6317 5.0487 24 6 -0.6484 0.2908 5.8559 25 7 -0.2622 -0.4186 7.0829 26 6 -1.4195 -0.6089 7.9674 27 6 0.3823 -1.7025 6.7757 28 6 1.6824 -1.4461 6.0054 29 1 -0.3634 0.6302 0.8117 30 1 -0.3633 0.3878 -0.9517 31 1 -0.3632 -1.0182 0.1398 32 1 2.8451 1.9404 -2.2973 33 1 1.4750 1.6685 -3.4007 34 1 1.2122 1.6753 -1.6402 35 1 3.0972 -0.0769 -4.2672 36 1 3.1779 -1.6009 -3.3510 37 1 0.4315 -2.8707 -6.9505 38 1 3.8257 -1.3586 2.0407 39 1 3.8759 -1.0593 0.2868 40 1 3.8520 0.3105 1.4231 41 1 0.3812 0.0004 2.3171 42 1 1.8984 0.8965 2.5685 43 1 1.2250 1.3449 5.6023 44 1 0.3312 1.0575 4.0860 45 1 -1.3042 -0.3439 5.2599 46 1 -1.1715 1.2107 6.1170 47 1 -1.0922 -1.0677 8.9004 48 1 -1.8779 0.3572 8.1789 49 1 -2.1471 -1.2573 7.4793 50 1 -0.2878 -2.3094 6.1669 51 1 0.6071 -2.2283 7.7036 52 1 2.1059 -2.3948 5.6756 53 1 2.3964 -0.9299 6.6474 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611522461.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:45 Heat of formation + Delta-G solvation = -53.928514 kcal Electronic energy + Delta-G solvation = -31133.810714 eV Core-core repulsion = 27040.802691 eV Total energy + Delta-G solvation = -4093.008023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.54553 -40.86445 -39.16401 -37.70275 -36.55297 -35.61776 -34.71994 -32.68294 -32.17487 -30.39210 -30.17358 -28.77461 -27.38427 -25.92168 -25.55215 -25.03907 -24.45221 -22.92594 -21.84580 -19.92374 -19.79148 -19.13881 -18.42317 -18.20480 -17.24319 -16.85972 -16.85612 -16.43960 -16.17278 -16.15416 -15.94828 -15.77359 -15.62798 -15.25444 -15.03359 -14.65287 -14.59222 -14.22889 -14.12443 -13.88802 -13.66166 -13.60864 -13.41591 -13.27146 -13.12742 -12.95485 -12.80951 -12.74579 -12.56415 -12.52287 -12.41912 -12.36734 -12.27212 -12.21506 -12.06215 -12.01690 -11.74252 -10.84059 -10.81323 -10.48521 -9.82939 -9.38567 -9.30814 -9.21115 -8.34654 -6.38981 1.30601 1.35781 1.43292 1.61425 1.73743 1.84542 2.27594 2.30090 2.91594 2.94581 2.99780 3.49933 3.59850 3.90218 3.96137 4.03184 4.05809 4.12155 4.14780 4.22678 4.26665 4.34587 4.39777 4.45467 4.51781 4.52989 4.63970 4.65836 4.66296 4.69939 4.74696 4.76288 4.80730 4.83384 4.85787 4.95366 4.96665 5.04302 5.07119 5.08435 5.24985 5.45749 5.47460 5.61580 5.88015 5.91652 5.97182 6.02734 6.24876 6.41869 6.62082 6.72953 7.21097 7.22100 7.47307 8.82010 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.002215 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.914386 B =12636.464383 C =12810.066128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.080 3.920 3 H 0.100 0.900 4 C 0.501 3.499 5 O -0.580 6.580 6 N -0.609 5.609 7 C 0.073 3.927 8 C 0.223 3.777 9 C -0.533 4.533 10 H 0.032 0.968 11 C 0.010 3.990 12 N -0.944 5.944 13 Si 0.945 3.055 14 H -0.281 1.281 15 H -0.273 1.273 16 H -0.238 1.238 17 N -0.535 5.535 18 C 0.032 3.968 19 C 0.039 3.961 20 C 0.511 3.489 21 O -0.569 6.569 22 N -0.616 5.616 23 C 0.107 3.893 24 C 0.037 3.963 25 N -0.549 5.549 26 C 0.025 3.975 27 C 0.048 3.952 28 C 0.116 3.884 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.030 0.970 46 H 0.112 0.888 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.020 0.980 50 H 0.022 0.978 51 H 0.099 0.901 52 H 0.071 0.929 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 16.270 29.304 33.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 H 0.118 0.882 4 C 0.289 3.711 5 O -0.459 6.459 6 N -0.341 5.341 7 C -0.069 4.069 8 C 0.101 3.899 9 C -0.571 4.571 10 H 0.050 0.950 11 C -0.188 4.188 12 N -0.584 5.584 13 Si 0.769 3.231 14 H -0.207 1.207 15 H -0.198 1.198 16 H -0.161 1.161 17 N -0.261 5.261 18 C -0.116 4.116 19 C -0.091 4.091 20 C 0.299 3.701 21 O -0.448 6.448 22 N -0.351 5.351 23 C -0.015 4.015 24 C -0.092 4.092 25 N -0.274 5.274 26 C -0.123 4.123 27 C -0.081 4.081 28 C -0.007 4.007 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.148 0.852 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.130 0.870 45 H 0.048 0.952 46 H 0.130 0.870 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.039 0.961 50 H 0.040 0.960 51 H 0.117 0.883 52 H 0.090 0.910 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.680 14.859 29.295 32.855 hybrid contribution 0.024 -0.925 -1.278 1.578 sum -0.655 13.934 28.017 31.298 Atomic orbital electron populations 1.21877 0.90698 1.02991 1.04264 1.21633 0.98067 0.96430 0.87005 0.88215 1.21152 0.77507 0.87080 0.85349 1.90655 1.51021 1.18625 1.85606 1.47956 1.67628 1.10309 1.08208 1.22058 1.02423 0.78219 1.04198 1.19303 0.94692 0.92798 0.83116 1.21548 0.93184 1.35478 1.06927 0.94960 1.25829 1.01088 0.94654 0.97186 1.70042 1.30814 1.38929 1.18589 0.85750 0.79847 0.79748 0.77804 1.20709 1.19771 1.16116 1.61159 1.09108 1.55274 1.00567 1.22361 0.86594 1.00477 1.02166 1.22205 1.03685 0.96290 0.86880 1.20997 0.78475 0.86028 0.84561 1.90695 1.41387 1.27572 1.85102 1.48292 1.55773 1.25023 1.06006 1.22244 0.92180 0.85029 1.01997 1.22683 0.96290 1.00018 0.90168 1.61994 1.28858 1.20255 1.16258 1.22416 0.90965 1.02303 0.96596 1.22422 0.94870 0.90808 1.00005 1.21648 0.97073 0.95847 0.86089 0.86774 0.91364 0.93783 0.90493 0.91416 0.88602 0.93128 0.96915 0.92302 0.91228 0.94018 0.93370 0.85189 0.88053 0.88937 0.86985 0.95198 0.86960 0.90654 0.89774 0.96098 0.95952 0.88251 0.91023 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.27 71.98 0.60 -2.84 16 2 C 0.08 2.26 1.62 44.17 0.07 2.34 16 3 H 0.10 2.00 6.64 -2.39 -0.02 1.98 16 4 C 0.50 21.15 5.79 87.66 0.51 21.65 16 5 O -0.58 -31.51 15.04 -3.03 -0.05 -31.55 16 6 N -0.61 -24.99 2.86 -851.13 -2.43 -27.42 16 7 C 0.07 1.99 10.06 127.77 1.29 3.27 16 8 C 0.22 11.19 4.28 85.64 0.37 11.56 16 9 C -0.53 -31.84 9.94 25.60 0.25 -31.58 16 10 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 11 C 0.01 0.63 5.47 84.65 0.46 1.09 16 12 N -0.94 -60.46 13.96 21.45 0.30 -60.16 16 13 Si 0.95 45.73 27.47 68.60 1.88 47.61 16 14 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 17 N -0.54 -16.09 4.07 -906.07 -3.69 -19.78 16 18 C 0.03 1.00 8.90 127.69 1.14 2.13 16 19 C 0.04 0.75 3.56 85.56 0.30 1.05 16 20 C 0.51 12.43 7.46 87.66 0.65 13.09 16 21 O -0.57 -20.17 13.76 -3.05 -0.04 -20.21 16 22 N -0.62 -10.58 3.00 -816.96 -2.45 -13.04 16 23 C 0.11 0.93 6.53 86.50 0.56 1.49 16 24 C 0.04 0.32 5.64 86.54 0.49 0.81 16 25 N -0.55 -6.12 4.88 -920.46 -4.49 -10.61 16 26 C 0.02 0.20 9.58 127.69 1.22 1.43 16 27 C 0.05 0.66 5.62 86.40 0.49 1.15 16 28 C 0.12 1.99 6.60 86.36 0.57 2.56 16 29 H 0.11 1.52 6.59 -2.39 -0.02 1.51 16 30 H 0.07 1.75 7.47 -2.39 -0.02 1.73 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.10 1.93 5.33 -2.38 -0.01 1.92 16 35 H 0.05 2.31 7.13 -2.39 -0.02 2.29 16 36 H 0.01 0.70 6.79 -2.39 -0.02 0.68 16 37 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.07 2.42 6.00 -2.39 -0.01 2.41 16 39 H 0.04 1.58 6.15 -2.39 -0.01 1.57 16 40 H 0.05 1.14 8.07 -2.39 -0.02 1.12 16 41 H 0.13 1.85 5.40 -2.39 -0.01 1.84 16 42 H 0.10 1.17 7.91 -2.39 -0.02 1.15 16 43 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.11 0.45 6.02 -2.38 -0.01 0.44 16 45 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.11 0.47 8.06 -2.39 -0.02 0.45 16 47 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 49 H 0.02 0.20 8.14 -2.39 -0.02 0.18 16 50 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.10 1.10 8.11 -2.39 -0.02 1.08 16 52 H 0.07 1.60 7.06 -2.39 -0.02 1.58 16 53 H 0.08 1.24 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -91.84 405.52 -1.17 -93.01 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.83 Total: 12.94 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 8.97 Total: 29.20 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -12.77 Total: -131.00 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.09 Total: -51.76 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -91.84 -1.17 -93.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611522461.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.086 kcal (2) G-P(sol) polarization free energy of solvation -91.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds