Wall clock time and date at job start Sat Apr 11 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52783 * 109.55481 * 239.76929 * 2 1 3 5 5 N 1.46899 * 109.42218 * 186.61459 * 4 2 1 6 6 C 1.46894 * 111.00234 * 187.11417 * 5 4 2 7 7 C 1.50707 * 109.47191 * 65.69334 * 6 5 4 8 8 O 1.21283 * 119.99728 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99726 * 180.02562 * 7 6 5 10 10 N 1.40108 * 119.99508 * 179.97438 * 9 7 6 11 11 C 1.34778 * 119.99508 * 179.97438 * 10 9 7 12 12 O 1.21269 * 120.00380 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99363 * 180.02562 * 11 10 9 14 14 C 1.53006 * 109.47016 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47580 * 300.00135 * 13 11 10 16 16 C 1.53000 * 109.47379 * 60.00431 * 13 11 10 17 17 C 1.46894 * 111.27103 * 62.95914 * 5 4 2 18 18 C 1.53234 * 109.34330 * 296.89836 * 17 5 4 19 19 H 1.09002 * 109.79039 * 294.02444 * 18 17 5 20 20 C 1.53000 * 109.62889 * 173.53884 * 18 17 5 21 21 N 1.47077 * 108.52349 * 53.83069 * 18 17 5 22 22 C 1.36933 * 120.88616 * 128.81552 * 21 18 17 23 23 H 1.08001 * 119.99502 * 308.48582 * 22 21 18 24 24 C 1.38808 * 120.00343 * 128.48527 * 22 21 18 25 25 N 1.31619 * 119.99798 * 338.24545 * 24 22 21 26 26 Si 1.86795 * 120.00346 * 158.24906 * 24 22 21 27 27 H 1.48499 * 109.47312 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46977 * 299.99798 * 26 24 22 29 29 H 1.48496 * 109.47349 * 59.99661 * 26 24 22 30 30 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 31 31 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 32 32 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 33 33 H 1.08993 * 109.56944 * 66.55215 * 4 2 1 34 34 H 1.09002 * 109.33885 * 306.52065 * 4 2 1 35 35 H 1.08997 * 109.47588 * 185.69155 * 6 5 4 36 36 H 1.09003 * 109.47150 * 305.69911 * 6 5 4 37 37 H 0.96995 * 120.00348 * 359.97438 * 9 7 6 38 38 H 0.96995 * 120.00144 * 0.02562 * 10 9 7 39 39 H 1.09000 * 109.47000 * 60.00054 * 14 13 11 40 40 H 1.09004 * 109.47274 * 180.02562 * 14 13 11 41 41 H 1.09002 * 109.46852 * 300.00056 * 14 13 11 42 42 H 1.09003 * 109.47403 * 60.00098 * 15 13 11 43 43 H 1.08997 * 109.47543 * 180.02562 * 15 13 11 44 44 H 1.09000 * 109.47013 * 300.00298 * 15 13 11 45 45 H 1.09002 * 109.47309 * 59.99441 * 16 13 11 46 46 H 1.09003 * 109.47507 * 180.02562 * 16 13 11 47 47 H 1.09002 * 109.47062 * 300.00025 * 16 13 11 48 48 H 1.09002 * 109.49105 * 176.93733 * 17 5 4 49 49 H 1.08998 * 109.49509 * 56.86094 * 17 5 4 50 50 H 1.09004 * 109.47199 * 300.97035 * 20 18 17 51 51 H 1.09005 * 109.47212 * 60.97157 * 20 18 17 52 52 H 1.09001 * 109.47144 * 180.97371 * 20 18 17 53 53 H 0.96996 * 120.00144 * 175.07008 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0494 -1.4025 -2.4148 7 6 3.8365 -0.4078 -3.5268 8 8 3.2833 0.6472 -3.2989 9 7 4.2608 -0.6907 -4.7743 10 7 4.0624 0.2339 -5.8082 11 6 4.4872 -0.0488 -7.0556 12 8 5.0407 -1.1035 -7.2833 13 6 4.2742 0.9459 -8.1675 14 6 4.8442 0.3833 -9.4712 15 6 2.7765 1.2080 -8.3375 16 6 4.9853 2.2561 -7.8229 17 6 3.8963 -1.6901 -0.0156 18 6 3.4619 -0.9994 1.2814 19 1 4.0199 -0.0720 1.4105 20 6 3.7240 -1.9264 2.4701 21 7 2.0240 -0.7028 1.1939 22 6 1.1671 -1.0760 2.1946 23 1 1.1626 -2.0962 2.5490 24 6 0.3044 -0.1433 2.7536 25 7 0.5736 1.1416 2.6591 26 14 -1.2386 -0.7115 3.6399 27 1 -1.9848 0.4703 4.1417 28 1 -2.0969 -1.4754 2.6992 29 1 -0.8611 -1.5810 4.7829 30 1 -0.3633 0.6279 0.8135 31 1 -0.3634 0.3905 -0.9506 32 1 -0.3634 -1.0185 0.1371 33 1 1.7785 -0.1529 -2.1337 34 1 1.5854 -1.7134 -1.2987 35 1 5.1165 -1.5891 -2.2938 36 1 3.5428 -2.3358 -2.6604 37 1 4.7036 -1.5342 -4.9564 38 1 3.6200 1.0776 -5.6260 39 1 4.3372 -0.5499 -9.7165 40 1 4.6906 1.1030 -10.2754 41 1 5.9112 0.1963 -9.3503 42 1 2.3700 1.6086 -7.4088 43 1 2.6225 1.9271 -9.1420 44 1 2.2699 0.2746 -8.5830 45 1 6.0524 2.0694 -7.7018 46 1 4.8309 2.9757 -8.6269 47 1 4.5789 2.6567 -6.8942 48 1 4.9788 -1.8181 -0.0146 49 1 3.4145 -2.6652 -0.0874 50 1 3.1703 -2.8556 2.3352 51 1 4.7901 -2.1446 2.5326 52 1 3.3982 -1.4396 3.3893 53 1 -0.0634 1.7960 2.9860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878774302.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:22 Heat of formation + Delta-G solvation = -33.189924 kcal Electronic energy + Delta-G solvation = -31191.952937 eV Core-core repulsion = 27099.844206 eV Total energy + Delta-G solvation = -4092.108731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.74554 -40.74141 -39.55318 -36.89826 -36.59068 -36.16937 -34.42486 -33.37566 -32.44572 -29.76356 -28.60197 -28.27511 -27.98694 -27.38551 -26.41623 -24.46068 -23.38570 -22.29795 -22.01210 -20.86125 -20.41536 -18.99893 -18.32145 -18.09340 -17.27607 -16.96761 -16.82300 -16.30449 -16.16591 -16.07391 -15.92442 -15.56394 -15.31379 -15.00260 -14.84544 -14.65560 -14.53243 -14.22686 -13.62798 -13.39520 -13.35482 -13.27776 -13.13044 -13.05428 -12.96201 -12.76266 -12.65396 -12.57590 -12.43470 -12.31514 -12.24130 -12.14060 -11.95741 -11.92398 -11.92175 -11.66234 -11.52706 -11.33730 -11.12216 -10.79948 -10.09741 -9.49624 -9.21996 -8.37667 -7.65959 -5.53652 0.72767 1.20752 1.45160 1.48071 1.53513 1.65250 2.51189 2.75038 3.09085 3.26098 3.39121 3.61961 3.73845 3.84444 3.85790 4.16595 4.18353 4.28979 4.31050 4.39166 4.57957 4.60599 4.68219 4.68711 4.69506 4.79133 4.80053 4.87939 4.90251 4.91144 4.93268 4.95933 4.97308 4.98367 5.03227 5.20154 5.27901 5.29139 5.32963 5.50480 5.54279 5.58033 5.63820 5.70520 5.75761 5.81345 6.14501 6.20513 6.46828 6.59154 6.80710 7.26914 7.28404 7.85995 8.59937 9.17671 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.002341 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.175682 B =11960.303562 C =12732.208986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.201 3.799 3 H -0.010 1.010 4 C 0.060 3.940 5 N -0.537 5.537 6 C 0.048 3.952 7 C 0.517 3.483 8 O -0.553 6.553 9 N -0.524 5.524 10 N -0.519 5.519 11 C 0.520 3.480 12 O -0.573 6.573 13 C -0.069 4.069 14 C -0.126 4.126 15 C -0.145 4.145 16 C -0.144 4.144 17 C 0.062 3.938 18 C 0.160 3.840 19 H 0.002 0.998 20 C -0.118 4.118 21 N -0.594 5.594 22 C -0.260 4.260 23 H 0.050 0.950 24 C -0.007 4.007 25 N -0.908 5.908 26 Si 0.934 3.066 27 H -0.296 1.296 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.024 0.976 35 H 0.139 0.861 36 H 0.088 0.912 37 H 0.437 0.563 38 H 0.434 0.566 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.099 0.901 49 H 0.037 0.963 50 H 0.050 0.950 51 H 0.074 0.926 52 H 0.035 0.965 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -2.947 -22.745 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.095 3.905 3 H 0.007 0.993 4 C -0.069 4.069 5 N -0.262 5.262 6 C -0.084 4.084 7 C 0.304 3.696 8 O -0.428 6.428 9 N -0.274 5.274 10 N -0.267 5.267 11 C 0.308 3.692 12 O -0.450 6.450 13 C -0.074 4.074 14 C -0.183 4.183 15 C -0.202 4.202 16 C -0.202 4.202 17 C -0.066 4.066 18 C 0.054 3.946 19 H 0.020 0.980 20 C -0.176 4.176 21 N -0.319 5.319 22 C -0.391 4.391 23 H 0.067 0.933 24 C -0.206 4.206 25 N -0.550 5.550 26 Si 0.761 3.239 27 H -0.222 1.222 28 H -0.200 1.200 29 H -0.198 1.198 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.157 0.843 36 H 0.106 0.894 37 H 0.281 0.719 38 H 0.277 0.723 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.081 0.919 48 H 0.117 0.883 49 H 0.055 0.945 50 H 0.069 0.931 51 H 0.093 0.907 52 H 0.054 0.946 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.303 -2.331 -22.514 24.472 hybrid contribution -1.360 -0.540 0.756 1.647 sum 7.943 -2.872 -21.759 23.341 Atomic orbital electron populations 1.21828 0.95971 1.01180 1.00069 1.20012 0.92721 0.92263 0.85487 0.99254 1.22508 0.86809 0.98377 0.99212 1.61458 1.11538 1.51075 1.02107 1.21961 1.04554 0.94400 0.87453 1.21282 0.77709 0.88704 0.81932 1.90736 1.42896 1.26806 1.82364 1.44987 1.62419 1.17922 1.02045 1.45154 1.61494 1.17715 1.02342 1.21619 0.77065 0.88579 0.81953 1.90689 1.44282 1.27136 1.82924 1.20849 0.99510 0.94467 0.92560 1.21700 1.00839 1.01353 0.94456 1.21966 0.91181 1.03110 1.03949 1.21965 1.00163 0.94545 1.03488 1.22567 1.00715 0.93682 0.89679 1.20742 0.85510 0.94791 0.93568 0.98020 1.21575 1.00447 0.98480 0.97064 1.44329 1.02022 1.68000 1.17576 1.18788 1.15762 0.91997 1.12504 0.93277 1.26043 1.02712 0.95118 0.96695 1.70324 1.34422 1.01042 1.49206 0.85910 0.81467 0.77293 0.79222 1.22193 1.19988 1.19819 0.92262 0.93916 0.93725 0.90792 0.95797 0.84305 0.89438 0.71933 0.72326 0.92857 0.89041 0.92789 0.91889 0.88592 0.92425 0.92330 0.88601 0.91886 0.88289 0.94511 0.93109 0.90746 0.94609 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 7.93 71.98 0.57 -5.78 16 2 C 0.20 9.87 3.16 44.81 0.14 10.01 16 3 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 4 C 0.06 2.39 4.52 86.23 0.39 2.78 16 5 N -0.54 -18.34 4.37 -900.79 -3.94 -22.28 16 6 C 0.05 1.12 5.45 85.56 0.47 1.59 16 7 C 0.52 13.51 7.61 87.66 0.67 14.18 16 8 O -0.55 -19.33 14.17 -3.04 -0.04 -19.37 16 9 N -0.52 -11.01 6.26 -173.52 -1.09 -12.10 16 10 N -0.52 -10.46 6.04 -173.54 -1.05 -11.51 16 11 C 0.52 10.19 6.60 87.66 0.58 10.77 16 12 O -0.57 -14.68 15.82 -3.00 -0.05 -14.72 16 13 C -0.07 -0.88 0.87 -52.93 -0.05 -0.93 16 14 C -0.13 -1.51 7.76 71.98 0.56 -0.95 16 15 C -0.14 -1.45 8.37 71.98 0.60 -0.85 16 16 C -0.14 -1.41 8.37 71.98 0.60 -0.81 16 17 C 0.06 2.03 4.91 86.38 0.42 2.46 16 18 C 0.16 6.81 3.66 44.96 0.16 6.98 16 19 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 20 C -0.12 -4.42 8.17 71.98 0.59 -3.83 16 21 N -0.59 -29.84 2.83 -651.50 -1.85 -31.68 16 22 C -0.26 -13.94 6.79 84.03 0.57 -13.37 16 23 H 0.05 2.63 7.14 -2.91 -0.02 2.61 16 24 C -0.01 -0.37 3.22 84.86 0.27 -0.09 16 25 N -0.91 -53.92 11.87 21.65 0.26 -53.66 16 26 Si 0.93 43.84 29.61 68.60 2.03 45.87 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 29 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 30 H 0.06 3.17 4.98 -2.39 -0.01 3.16 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 2.11 7.68 -2.39 -0.02 2.09 16 33 H 0.07 2.97 5.77 -2.39 -0.01 2.96 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.14 2.30 7.97 -2.39 -0.02 2.28 16 36 H 0.09 1.68 8.12 -2.39 -0.02 1.66 16 37 H 0.44 7.68 8.00 -213.32 -1.71 5.97 16 38 H 0.43 8.39 6.84 -213.32 -1.46 6.93 16 39 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 40 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.05 0.76 8.10 -2.39 -0.02 0.74 16 42 H 0.06 0.65 7.57 -2.39 -0.02 0.64 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.06 0.64 7.56 -2.39 -0.02 0.62 16 48 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 49 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.05 1.86 7.60 -2.39 -0.02 1.84 16 51 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 52 H 0.03 1.53 7.65 -2.39 -0.02 1.51 16 53 H 0.25 14.38 8.32 -92.71 -0.77 13.61 16 Total: -1.00 -74.42 408.61 -1.43 -75.85 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -2.26 Total: 21.47 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 6.55 Total: 22.14 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -7.66 Total: -131.23 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.09 Total: -34.10 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.42 -1.43 -75.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878774302.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.660 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds