Wall clock time and date at job start Sat Apr 11 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47491 * 2 1 4 4 C 1.46493 * 120.00329 * 89.99587 * 3 2 1 5 5 C 1.50701 * 109.47373 * 270.00224 * 4 3 2 6 6 H 1.08005 * 119.99754 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00448 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99884 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00520 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47196 * 59.99933 * 9 7 5 11 11 H 1.48500 * 109.47380 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47290 * 300.00313 * 9 7 5 13 13 C 1.34780 * 119.99459 * 270.00377 * 3 2 1 14 14 O 1.21283 * 119.99825 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99978 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.46743 * 174.72189 * 15 13 3 17 17 C 1.46844 * 111.00265 * 300.49614 * 16 15 13 18 18 C 1.53041 * 109.52286 * 185.84101 * 17 16 15 19 19 C 1.53116 * 109.27805 * 300.81547 * 18 17 16 20 20 C 1.53119 * 109.15807 * 57.65920 * 19 18 17 21 21 C 1.46851 * 111.00154 * 64.70460 * 16 15 13 22 22 H 1.09006 * 109.46081 * 294.16370 * 21 16 15 23 23 C 1.52998 * 109.46140 * 54.14035 * 21 16 15 24 24 N 1.46502 * 109.47214 * 54.43239 * 23 21 16 25 25 C 1.34770 * 120.00482 * 174.96061 * 24 23 21 26 26 O 1.21586 * 119.99766 * 0.02562 * 25 24 23 27 27 N 1.34775 * 120.00242 * 179.97438 * 25 24 23 28 28 C 1.46501 * 119.99947 * 179.97438 * 27 25 24 29 29 H 1.09002 * 109.46795 * 300.00620 * 1 2 3 30 30 H 1.09000 * 109.47189 * 60.00271 * 1 2 3 31 31 H 1.08993 * 109.47409 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47267 * 239.99598 * 2 1 3 33 33 H 1.09006 * 109.46874 * 119.99398 * 2 1 3 34 34 H 1.09003 * 109.46844 * 150.00282 * 4 3 2 35 35 H 1.08999 * 109.47312 * 30.00441 * 4 3 2 36 36 H 0.96999 * 120.00372 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47097 * 294.72044 * 15 13 3 38 38 H 1.08999 * 109.46709 * 54.72855 * 15 13 3 39 39 H 1.09001 * 109.46080 * 305.85407 * 17 16 15 40 40 H 1.08998 * 109.46847 * 65.82065 * 17 16 15 41 41 H 1.09005 * 109.50172 * 180.87889 * 18 17 16 42 42 H 1.09001 * 109.53886 * 60.78197 * 18 17 16 43 43 H 1.08997 * 109.52329 * 297.75230 * 19 18 17 44 44 H 1.09000 * 109.52016 * 177.55822 * 19 18 17 45 45 H 1.09000 * 109.50357 * 182.40643 * 20 19 18 46 46 H 1.08997 * 109.53691 * 62.30647 * 20 19 18 47 47 H 1.09001 * 109.46949 * 174.43102 * 23 21 16 48 48 H 1.08998 * 109.47209 * 294.43195 * 23 21 16 49 49 H 0.97009 * 119.99925 * 354.95881 * 24 23 21 50 50 H 0.96995 * 120.00180 * 0.02562 * 27 25 24 51 51 H 1.09002 * 109.46935 * 60.00199 * 28 27 25 52 52 H 1.09003 * 109.46966 * 179.97438 * 28 27 25 53 53 H 1.08996 * 109.47230 * 300.00105 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2686 5 6 1.0067 2.7824 1.7036 6 1 0.1159 2.7255 1.0956 7 6 0.9952 3.5058 2.8772 8 7 2.0804 3.5764 3.6168 9 14 -0.5611 4.3871 3.4160 10 1 -1.6540 3.3975 3.5940 11 1 -0.3137 5.0871 4.7021 12 1 -0.9534 5.3768 2.3807 13 6 2.2430 2.0165 -1.1673 14 8 2.6469 3.1601 -1.1674 15 6 1.9922 1.3058 -2.4724 16 7 2.1884 2.2434 -3.5860 17 6 1.2739 3.3873 -3.4783 18 6 1.4036 4.2649 -4.7253 19 6 2.8492 4.7536 -4.8515 20 6 3.7851 3.5433 -4.9132 21 6 3.5864 2.6866 -3.6608 22 1 3.8286 3.2754 -2.7760 23 6 4.5055 1.4652 -3.7275 24 7 4.0940 0.6046 -4.8395 25 6 4.8240 -0.4833 -5.1555 26 8 5.8238 -0.7508 -4.5175 27 7 4.4452 -1.2753 -6.1781 28 6 5.2390 -2.4575 -6.5220 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0645 2.7985 1.1382 35 1 2.5506 1.3453 2.0283 36 1 2.0725 4.0857 4.4423 37 1 2.6879 0.4726 -2.5719 38 1 0.9694 0.9293 -2.4903 39 1 0.2490 3.0261 -3.3934 40 1 1.5269 3.9726 -2.5943 41 1 0.7360 5.1222 -4.6380 42 1 1.1371 3.6847 -5.6088 43 1 3.1032 5.3668 -3.9869 44 1 2.9561 5.3435 -5.7618 45 1 4.8192 3.8849 -4.9601 46 1 3.5571 2.9510 -5.7993 47 1 5.5337 1.7922 -3.8824 48 1 4.4382 0.9083 -2.7930 49 1 3.2961 0.8178 -5.3483 50 1 3.6473 -1.0621 -6.6869 51 1 5.2759 -3.1319 -5.6664 52 1 4.7806 -2.9695 -7.3681 53 1 6.2509 -2.1512 -6.7871 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879335916.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:30 Heat of formation + Delta-G solvation = -85.011004 kcal Electronic energy + Delta-G solvation = -32210.949668 eV Core-core repulsion = 28116.593807 eV Total energy + Delta-G solvation = -4094.355861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.74781 -40.75406 -39.34673 -36.94398 -35.85358 -35.43956 -34.96292 -34.30553 -32.09396 -31.54599 -29.90388 -28.39299 -27.77891 -26.26014 -24.95389 -24.24462 -23.64559 -22.43458 -21.97175 -20.68543 -19.77939 -19.51976 -18.70470 -17.95761 -17.56586 -17.12402 -16.92141 -16.52410 -16.25115 -15.99266 -15.85725 -15.51224 -15.28101 -15.04361 -14.80806 -14.65982 -14.60443 -14.28223 -14.00892 -13.93489 -13.70438 -13.49963 -13.29374 -13.13483 -13.01835 -12.95675 -12.86561 -12.76984 -12.65456 -12.51887 -12.16262 -11.87461 -11.81462 -11.63241 -11.57841 -11.37183 -11.29339 -11.22580 -11.06950 -10.64713 -10.32654 -9.67648 -9.41752 -9.14427 -8.22638 -6.36452 1.33518 1.37222 1.44523 1.77335 1.87337 2.22977 2.30600 2.46038 2.82866 3.06742 3.52263 3.69610 3.71467 3.83605 3.98197 4.14764 4.16630 4.29537 4.39739 4.45413 4.49894 4.52995 4.55872 4.59815 4.64569 4.72641 4.74486 4.82265 4.90106 4.92482 4.98059 5.02318 5.03254 5.05303 5.12586 5.15401 5.21458 5.27532 5.28897 5.48369 5.50757 5.54309 5.59105 5.60719 5.85530 5.93292 6.02487 6.06561 6.13021 6.70050 6.81271 7.23128 7.28572 7.48925 7.68359 8.84374 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.003314 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.119502 B = 8446.374138 C = 9549.297751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.603 5.603 4 C 0.263 3.737 5 C -0.529 4.529 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.466 3.534 14 O -0.582 6.582 15 C 0.041 3.959 16 N -0.484 5.484 17 C 0.036 3.964 18 C -0.103 4.103 19 C -0.120 4.120 20 C -0.098 4.098 21 C 0.060 3.940 22 H 0.053 0.947 23 C 0.156 3.844 24 N -0.714 5.714 25 C 0.693 3.307 26 O -0.647 6.647 27 N -0.737 5.737 28 C 0.105 3.895 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.071 0.929 34 H -0.007 1.007 35 H 0.014 0.986 36 H 0.265 0.735 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.028 0.972 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.039 0.961 49 H 0.417 0.583 50 H 0.415 0.585 51 H 0.043 0.957 52 H 0.114 0.886 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 -9.710 -24.892 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.019 4.019 3 N -0.335 5.335 4 C 0.141 3.859 5 C -0.568 4.568 6 H 0.074 0.926 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.254 3.746 14 O -0.463 6.463 15 C -0.090 4.090 16 N -0.207 5.207 17 C -0.091 4.091 18 C -0.141 4.141 19 C -0.158 4.158 20 C -0.135 4.135 21 C -0.049 4.049 22 H 0.071 0.929 23 C 0.031 3.969 24 N -0.371 5.371 25 C 0.393 3.607 26 O -0.529 6.529 27 N -0.393 5.393 28 C -0.040 4.040 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.011 0.989 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.080 0.920 48 H 0.057 0.943 49 H 0.255 0.745 50 H 0.251 0.749 51 H 0.062 0.938 52 H 0.132 0.868 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.560 -9.562 -24.598 26.437 hybrid contribution -0.770 1.400 1.836 2.434 sum -2.330 -8.161 -22.761 24.292 Atomic orbital electron populations 1.22128 0.95047 1.02886 1.01752 1.21706 0.95532 0.81247 1.03414 1.48449 1.63595 1.14851 1.06569 1.18671 0.95386 0.91288 0.80543 1.21622 0.97763 1.31171 1.06206 0.92601 1.25854 0.99726 0.97118 0.96642 1.70056 1.29681 1.42540 1.14892 0.85526 0.79528 0.78803 0.77325 1.18481 1.20625 1.20254 1.22612 0.77468 0.87100 0.87415 1.90572 1.48241 1.19915 1.87597 1.22486 1.05401 0.96501 0.84648 1.62538 1.04334 1.15791 1.38030 1.22319 0.96002 0.92132 0.98686 1.21504 0.96543 0.98618 0.97439 1.21565 0.95283 0.97396 1.01549 1.21531 0.99514 0.95889 0.96611 1.22090 0.88131 0.94812 0.99897 0.92895 1.21012 0.97540 0.89829 0.88557 1.44766 1.30443 1.25944 1.35994 1.16271 0.82672 0.80560 0.81230 1.90907 1.29851 1.75586 1.56557 1.44795 1.31861 1.28335 1.34308 1.21504 0.95583 0.85712 1.01180 0.94292 0.92565 0.89026 0.88259 0.91085 0.98889 0.96794 0.92581 0.86805 0.86026 0.90710 0.95389 0.91483 0.89241 0.94654 0.89784 0.91512 0.89318 0.92000 0.94300 0.74514 0.74852 0.93838 0.86801 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.46 10.19 71.98 0.73 -3.73 16 2 C 0.10 3.18 5.90 86.38 0.51 3.69 16 3 N -0.60 -25.34 2.46 -826.15 -2.03 -27.37 16 4 C 0.26 14.33 5.20 85.63 0.45 14.77 16 5 C -0.53 -30.32 8.92 25.60 0.23 -30.09 16 6 H 0.06 3.14 7.42 -2.91 -0.02 3.12 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -57.30 13.29 21.44 0.28 -57.02 16 9 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.47 18.54 7.07 87.66 0.62 19.16 16 14 O -0.58 -28.27 11.22 -3.04 -0.03 -28.31 16 15 C 0.04 1.10 3.92 85.56 0.34 1.44 16 16 N -0.48 -11.75 4.04 -875.63 -3.54 -15.29 16 17 C 0.04 0.98 5.00 86.33 0.43 1.42 16 18 C -0.10 -2.10 6.09 30.65 0.19 -1.91 16 19 C -0.12 -2.52 6.00 30.67 0.18 -2.33 16 20 C -0.10 -1.98 5.26 30.65 0.16 -1.82 16 21 C 0.06 1.57 1.72 44.94 0.08 1.65 16 22 H 0.05 1.94 5.71 -2.38 -0.01 1.93 16 23 C 0.16 4.08 4.55 86.38 0.39 4.48 16 24 N -0.71 -14.10 5.02 -478.55 -2.40 -16.51 16 25 C 0.69 16.27 8.57 179.06 1.53 17.80 16 26 O -0.65 -22.19 16.34 -3.99 -0.07 -22.25 16 27 N -0.74 -10.50 5.72 -500.20 -2.86 -13.36 16 28 C 0.10 1.29 10.70 127.77 1.37 2.66 16 29 H 0.04 1.37 7.26 -2.39 -0.02 1.36 16 30 H 0.06 1.46 7.13 -2.39 -0.02 1.45 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 2.31 6.59 -2.39 -0.02 2.29 16 33 H 0.07 2.23 7.89 -2.38 -0.02 2.21 16 34 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 35 H 0.01 0.79 7.89 -2.39 -0.02 0.77 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.11 2.82 5.54 -2.39 -0.01 2.81 16 38 H 0.12 2.75 6.90 -2.39 -0.02 2.73 16 39 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 40 H 0.03 1.06 5.66 -2.39 -0.01 1.04 16 41 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.39 7.32 -2.39 -0.02 1.38 16 47 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.04 1.20 6.56 -2.39 -0.02 1.19 16 49 H 0.42 6.00 7.45 -92.70 -0.69 5.31 16 50 H 0.42 2.88 8.84 -92.71 -0.82 2.06 16 51 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -81.19 406.93 -1.53 -82.72 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.59 Total: 22.20 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 7.67 Total: 27.94 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -10.54 Total: -129.55 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.10 Total: -50.56 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -81.19 -1.53 -82.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879335916.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.287 kcal (2) G-P(sol) polarization free energy of solvation -81.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds