Wall clock time and date at job start Sat Apr 11 2020 06:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47120 * 239.99906 * 2 1 3 5 5 C 1.50705 * 109.47109 * 175.00074 * 4 2 1 6 6 O 1.21281 * 119.99910 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99544 * 179.97438 * 5 4 2 8 8 C 1.46507 * 119.99300 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46835 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.70042 * 299.78253 * 9 8 7 11 11 C 1.52750 * 109.50806 * 179.66187 * 9 8 7 12 12 C 1.53041 * 109.38376 * 185.70385 * 11 9 8 13 13 C 1.53049 * 109.53599 * 61.24272 * 12 11 9 14 14 C 1.53002 * 109.49533 * 178.68693 * 13 12 11 15 15 C 1.52994 * 109.52327 * 58.60127 * 13 12 11 16 16 C 1.53196 * 109.30883 * 298.63513 * 13 12 11 17 17 N 1.46918 * 108.77587 * 54.63466 * 16 13 12 18 18 C 1.36939 * 120.63127 * 126.36780 * 17 16 13 19 19 H 1.07998 * 120.00419 * 229.51257 * 18 17 16 20 20 C 1.38814 * 119.99625 * 49.50702 * 18 17 16 21 21 N 1.31622 * 119.99655 * 188.82906 * 20 18 17 22 22 Si 1.86794 * 120.00384 * 8.55782 * 20 18 17 23 23 H 1.48496 * 109.47222 * 84.40159 * 22 20 18 24 24 H 1.48501 * 109.47347 * 204.40659 * 22 20 18 25 25 H 1.48500 * 109.46875 * 324.40409 * 22 20 18 26 26 N 1.46500 * 109.47060 * 119.99646 * 2 1 3 27 27 C 1.34774 * 120.00452 * 275.00464 * 26 2 1 28 28 N 1.34777 * 120.00101 * 180.02562 * 27 26 2 29 29 O 1.21587 * 119.99686 * 359.97438 * 27 26 2 30 30 H 1.09002 * 109.47290 * 59.99789 * 1 2 3 31 31 H 1.08995 * 109.47322 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47151 * 300.00339 * 1 2 3 33 33 H 1.08998 * 109.47141 * 55.00041 * 4 2 1 34 34 H 1.08996 * 109.47303 * 295.00291 * 4 2 1 35 35 H 0.96998 * 120.00621 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.47440 * 59.99974 * 8 7 5 37 37 H 1.08995 * 109.46928 * 299.99379 * 8 7 5 38 38 H 1.08995 * 109.57056 * 65.67057 * 11 9 8 39 39 H 1.09001 * 109.36276 * 305.61142 * 11 9 8 40 40 H 1.08998 * 109.46473 * 301.21963 * 12 11 9 41 41 H 1.09005 * 109.46419 * 181.25643 * 12 11 9 42 42 H 1.09001 * 109.46920 * 179.83607 * 14 13 12 43 43 H 1.09004 * 109.46981 * 299.83284 * 14 13 12 44 44 H 1.08994 * 109.47313 * 59.83602 * 14 13 12 45 45 H 1.08994 * 109.47663 * 300.14568 * 15 13 12 46 46 H 1.09004 * 109.47283 * 60.15145 * 15 13 12 47 47 H 1.09011 * 109.46676 * 180.14622 * 15 13 12 48 48 H 1.09000 * 109.58244 * 294.84867 * 16 13 12 49 49 H 1.09003 * 109.70192 * 174.49585 * 16 13 12 50 50 H 0.96998 * 119.99990 * 179.72648 * 21 20 18 51 51 H 0.97006 * 119.99839 * 94.99574 * 26 2 1 52 52 H 0.97000 * 120.00157 * 359.97438 * 28 27 26 53 53 H 0.97000 * 119.99915 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3127 6 8 4.1451 -0.0212 -0.4440 7 7 4.2149 -1.1806 -2.3342 8 6 5.6751 -1.0777 -2.3956 9 6 6.1851 -1.7989 -3.6449 10 1 5.9016 -2.8505 -3.6036 11 6 7.7067 -1.6849 -3.7143 12 6 8.2012 -2.2818 -5.0339 13 6 7.6027 -1.4998 -6.2054 14 6 8.1233 -2.0765 -7.5235 15 6 8.0063 -0.0280 -6.0971 16 6 6.0757 -1.6156 -6.1644 17 7 5.6036 -1.1789 -4.8434 18 6 4.6441 -0.2084 -4.7311 19 1 4.7975 0.6283 -4.0658 20 6 3.4742 -0.3001 -5.4727 21 7 2.6316 0.7108 -5.5002 22 14 3.0993 -1.8550 -6.4376 23 1 2.4564 -2.8501 -5.5423 24 1 2.1812 -1.5323 -7.5593 25 1 4.3623 -2.4186 -6.9782 26 7 2.0183 -0.6905 1.1962 27 6 2.1470 -0.0182 2.3572 28 7 2.5967 -0.6535 3.4575 29 8 1.8582 1.1616 2.4117 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -0.2618 -2.1369 34 1 1.7516 -1.7715 -1.2056 35 1 3.7326 -1.6558 -3.0288 36 1 6.1094 -1.5371 -1.5077 37 1 5.9637 -0.0275 -2.4395 38 1 8.1519 -2.2274 -2.8803 39 1 7.9933 -0.6346 -3.6601 40 1 7.8930 -3.3253 -5.0986 41 1 9.2888 -2.2214 -5.0749 42 1 7.6946 -1.5211 -8.3576 43 1 9.2099 -1.9939 -7.5522 44 1 7.8366 -3.1253 -7.5996 45 1 7.6362 0.3821 -5.1575 46 1 9.0928 0.0539 -6.1264 47 1 7.5774 0.5286 -6.9305 48 1 5.7833 -2.6521 -6.3326 49 1 5.6382 -0.9826 -6.9365 50 1 1.8161 0.6483 -6.0216 51 1 2.2490 -1.6318 1.1527 52 1 2.8275 -1.5946 3.4140 53 1 2.6897 -0.1695 4.2930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099069132.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:37 Heat of formation + Delta-G solvation = -81.868724 kcal Electronic energy + Delta-G solvation = -32126.277717 eV Core-core repulsion = 28032.058115 eV Total energy + Delta-G solvation = -4094.219602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.20317 -40.62669 -39.89001 -36.98284 -36.33672 -34.82714 -34.69329 -33.72561 -32.51799 -31.84115 -29.69026 -28.13453 -28.06402 -27.25155 -25.01863 -24.00796 -23.22047 -21.76194 -21.63850 -20.97823 -19.83055 -19.29685 -18.48904 -18.10483 -17.63520 -17.08683 -16.71918 -16.58333 -16.40915 -15.97548 -15.54745 -15.41389 -15.27396 -15.12856 -14.86432 -14.76380 -14.49031 -14.16520 -14.01316 -13.84272 -13.39046 -13.34813 -13.11301 -12.85329 -12.80919 -12.77664 -12.68750 -12.60534 -12.51357 -12.24845 -12.04259 -11.97024 -11.90533 -11.39628 -11.37832 -11.20129 -11.05787 -10.91277 -10.68958 -10.60816 -10.37315 -9.89833 -9.69740 -8.36467 -8.00594 -5.60851 1.45288 1.55169 1.59737 1.86223 2.02582 2.31392 2.53902 2.56439 3.23193 3.37404 3.68122 3.77039 3.94415 3.95277 4.00332 4.11120 4.22999 4.31272 4.39365 4.47468 4.51778 4.63568 4.65433 4.76610 4.76945 4.79557 4.87166 4.90028 4.93098 5.02130 5.06268 5.07614 5.10196 5.14608 5.16966 5.22717 5.29968 5.32290 5.49111 5.51426 5.58888 5.62802 5.76259 5.79817 5.96103 6.08705 6.10836 6.42435 6.85187 7.12259 7.18729 7.51500 7.71275 7.74936 8.22756 9.15357 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.003406 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.604433 B = 8218.869132 C = 9440.403462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.182 3.818 3 H 0.047 0.953 4 C -0.140 4.140 5 C 0.503 3.497 6 O -0.590 6.590 7 N -0.690 5.690 8 C 0.145 3.855 9 C 0.161 3.839 10 H 0.053 0.947 11 C -0.127 4.127 12 C -0.091 4.091 13 C -0.087 4.087 14 C -0.133 4.133 15 C -0.121 4.121 16 C 0.147 3.853 17 N -0.608 5.608 18 C -0.225 4.225 19 H 0.023 0.977 20 C -0.002 4.002 21 N -0.953 5.953 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.324 1.324 25 H -0.209 1.209 26 N -0.715 5.715 27 C 0.702 3.298 28 N -0.849 5.849 29 O -0.652 6.652 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.407 0.593 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.039 0.961 46 H 0.059 0.941 47 H 0.030 0.970 48 H 0.039 0.961 49 H 0.036 0.964 50 H 0.258 0.742 51 H 0.407 0.593 52 H 0.412 0.588 53 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 -14.584 6.554 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.076 3.924 3 H 0.065 0.935 4 C -0.180 4.180 5 C 0.291 3.709 6 O -0.471 6.471 7 N -0.339 5.339 8 C 0.021 3.979 9 C 0.056 3.944 10 H 0.071 0.929 11 C -0.167 4.167 12 C -0.128 4.128 13 C -0.089 4.089 14 C -0.191 4.191 15 C -0.179 4.179 16 C 0.023 3.977 17 N -0.334 5.334 18 C -0.356 4.356 19 H 0.041 0.959 20 C -0.199 4.199 21 N -0.597 5.597 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.253 1.253 25 H -0.132 1.132 26 N -0.370 5.370 27 C 0.400 3.600 28 N -0.418 5.418 29 O -0.535 6.535 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.148 0.852 35 H 0.243 0.757 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.067 0.933 51 H 0.243 0.757 52 H 0.243 0.757 53 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.780 -13.167 6.962 15.643 hybrid contribution -0.666 -0.328 -0.797 1.089 sum 4.113 -13.495 6.166 15.396 Atomic orbital electron populations 1.22108 0.93215 1.03527 1.02243 1.20316 0.94260 0.95612 0.82252 0.93505 1.21968 0.91472 1.05005 0.99552 1.20917 0.90843 0.78072 0.81110 1.90656 1.71239 1.44261 1.40991 1.45896 1.07780 1.55168 1.25036 1.21122 0.80503 0.99012 0.97292 1.20900 0.93094 0.95079 0.85301 0.92896 1.21885 0.95028 1.01149 0.98589 1.21404 0.99950 0.98745 0.92730 1.21080 0.96075 0.95477 0.96235 1.21764 1.01175 1.00620 0.95502 1.21658 0.99868 0.95758 1.00591 1.21726 0.92274 0.96857 0.86869 1.44350 1.44411 1.44085 1.00565 1.18152 0.93946 0.99330 1.24127 0.95901 1.26216 0.95244 0.98897 0.99564 1.69957 1.12827 1.32826 1.44081 0.86847 0.80029 0.81954 0.78537 1.20163 1.25253 1.13222 1.44769 1.70583 1.13652 1.08001 1.16176 0.77746 0.84373 0.81747 1.42700 1.72444 1.15537 1.11097 1.90902 1.59989 1.16901 1.85665 0.91100 0.89774 0.93264 0.87833 0.85185 0.75717 0.91115 0.95592 0.89987 0.93088 0.91418 0.90859 0.93649 0.91397 0.92086 0.94144 0.92218 0.95053 0.94298 0.94531 0.93326 0.75743 0.75717 0.74921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.48 71.98 0.68 -3.16 16 2 C 0.18 5.60 2.14 44.99 0.10 5.70 16 3 H 0.05 1.92 7.39 -2.39 -0.02 1.90 16 4 C -0.14 -4.14 5.24 29.85 0.16 -3.98 16 5 C 0.50 18.80 7.69 87.66 0.67 19.47 16 6 O -0.59 -25.96 15.35 -3.03 -0.05 -26.01 16 7 N -0.69 -25.33 4.13 -463.04 -1.91 -27.24 16 8 C 0.15 5.21 4.49 86.38 0.39 5.59 16 9 C 0.16 5.24 3.00 44.83 0.13 5.38 16 10 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 11 C -0.13 -3.44 5.00 30.53 0.15 -3.29 16 12 C -0.09 -2.19 4.71 30.62 0.14 -2.05 16 13 C -0.09 -2.50 0.77 -52.10 -0.04 -2.54 16 14 C -0.13 -3.11 8.48 71.98 0.61 -2.50 16 15 C -0.12 -3.84 7.99 71.98 0.57 -3.27 16 16 C 0.15 5.30 2.71 86.37 0.23 5.53 16 17 N -0.61 -23.93 1.85 -676.04 -1.25 -25.19 16 18 C -0.23 -11.05 6.60 84.03 0.55 -10.50 16 19 H 0.02 1.38 7.09 -2.91 -0.02 1.36 16 20 C 0.00 -0.12 5.29 84.86 0.45 0.33 16 21 N -0.95 -54.85 13.97 21.65 0.30 -54.55 16 22 Si 0.90 38.64 26.62 68.60 1.83 40.46 16 23 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.32 -15.18 7.11 99.48 0.71 -14.47 16 25 H -0.21 -7.96 3.87 99.48 0.39 -7.57 16 26 N -0.71 -19.01 4.22 -457.82 -1.93 -20.94 16 27 C 0.70 21.44 8.80 179.06 1.58 23.01 16 28 N -0.85 -16.26 8.88 -184.75 -1.64 -17.90 16 29 O -0.65 -27.08 16.84 -3.99 -0.07 -27.15 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.41 15.08 7.33 -92.71 -0.68 14.40 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.03 1.13 7.46 -2.39 -0.02 1.11 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.57 6.33 -2.39 -0.02 1.56 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.04 1.50 5.97 -2.39 -0.01 1.48 16 46 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.03 1.05 8.14 -2.38 -0.02 1.04 16 48 H 0.04 1.35 6.36 -2.39 -0.02 1.34 16 49 H 0.04 1.51 6.49 -2.39 -0.02 1.49 16 50 H 0.26 14.39 8.31 -92.71 -0.77 13.61 16 51 H 0.41 7.98 8.62 -92.70 -0.80 7.19 16 52 H 0.41 4.82 8.84 -92.71 -0.82 4.00 16 53 H 0.42 7.05 8.93 -92.71 -0.83 6.22 16 Total: -1.00 -75.28 403.61 -0.84 -76.13 By element: Atomic # 1 Polarization: 51.15 SS G_CDS: -2.51 Total: 48.64 kcal Atomic # 6 Polarization: 27.35 SS G_CDS: 6.39 Total: 33.74 kcal Atomic # 7 Polarization: -139.38 SS G_CDS: -6.44 Total: -145.82 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.11 Total: -53.15 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.83 Total: 40.46 kcal Total: -75.28 -0.84 -76.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099069132.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.743 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds