Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47649 * 2 1 4 4 C 1.53001 * 109.47322 * 239.99805 * 2 1 3 5 5 C 1.50694 * 109.47189 * 175.00441 * 4 2 1 6 6 O 1.21277 * 120.00134 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00078 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00184 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47295 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.58283 * 60.07762 * 9 8 7 11 11 C 1.53190 * 109.58977 * 180.36343 * 9 8 7 12 12 C 1.53064 * 109.29668 * 174.28003 * 11 9 8 13 13 C 1.53041 * 109.66179 * 298.84491 * 12 11 9 14 14 C 1.52996 * 109.49738 * 301.35200 * 13 12 11 15 15 C 1.52995 * 109.52898 * 181.26727 * 13 12 11 16 16 C 1.53198 * 109.30895 * 61.29966 * 13 12 11 17 17 N 1.46920 * 108.77631 * 305.36601 * 16 13 12 18 18 C 1.36937 * 120.63083 * 233.58608 * 17 16 13 19 19 H 1.08011 * 119.99769 * 148.96725 * 18 17 16 20 20 C 1.38807 * 120.00129 * 328.96661 * 18 17 16 21 21 N 1.31618 * 120.00035 * 345.98282 * 20 18 17 22 22 Si 1.86804 * 120.00045 * 165.98303 * 20 18 17 23 23 H 1.48493 * 109.47130 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47058 * 120.00220 * 22 20 18 25 25 H 1.48495 * 109.47012 * 239.99961 * 22 20 18 26 26 N 1.46501 * 109.46930 * 119.99834 * 2 1 3 27 27 C 1.34771 * 120.00339 * 274.99914 * 26 2 1 28 28 N 1.34771 * 120.00345 * 179.97438 * 27 26 2 29 29 O 1.21591 * 119.99811 * 0.02562 * 27 26 2 30 30 H 1.08995 * 109.47479 * 300.00412 * 1 2 3 31 31 H 1.09008 * 109.47055 * 59.99908 * 1 2 3 32 32 H 1.08997 * 109.47649 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47032 * 295.00428 * 4 2 1 34 34 H 1.09001 * 109.47073 * 54.99793 * 4 2 1 35 35 H 0.97005 * 120.00047 * 0.02562 * 7 5 4 36 36 H 1.08994 * 109.47340 * 300.00167 * 8 7 5 37 37 H 1.09003 * 109.46996 * 60.00439 * 8 7 5 38 38 H 1.09000 * 109.49228 * 294.37359 * 11 9 8 39 39 H 1.09004 * 109.49571 * 54.46718 * 11 9 8 40 40 H 1.08997 * 109.45455 * 178.75619 * 12 11 9 41 41 H 1.09004 * 109.33502 * 58.86502 * 12 11 9 42 42 H 1.09004 * 109.47014 * 179.83414 * 14 13 12 43 43 H 1.08997 * 109.46855 * 299.83177 * 14 13 12 44 44 H 1.08995 * 109.47537 * 59.83457 * 14 13 12 45 45 H 1.09004 * 109.47184 * 300.14709 * 15 13 12 46 46 H 1.09000 * 109.46873 * 60.14450 * 15 13 12 47 47 H 1.08994 * 109.47670 * 180.15068 * 15 13 12 48 48 H 1.08998 * 109.58216 * 185.58023 * 16 13 12 49 49 H 1.08997 * 109.70338 * 65.22893 * 16 13 12 50 50 H 0.97004 * 119.99896 * 179.97438 * 21 20 18 51 51 H 0.97003 * 119.99955 * 95.00257 * 26 2 1 52 52 H 0.96999 * 120.00307 * 0.02562 * 28 27 26 53 53 H 0.97005 * 120.00580 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 8 4.1449 -0.0205 -0.4444 7 7 4.2150 -1.1807 -2.3341 8 6 5.6750 -1.0769 -2.3961 9 6 6.1851 -1.7983 -3.6452 10 1 5.7523 -1.3396 -4.5343 11 6 7.7125 -1.6992 -3.7078 12 6 8.2264 -2.5413 -4.8781 13 6 7.8428 -4.0074 -4.6651 14 6 8.4382 -4.5047 -3.3464 15 6 8.3851 -4.8511 -5.8205 16 6 6.3165 -4.1296 -4.6153 17 7 5.8023 -3.2157 -3.5863 18 6 4.9815 -3.6759 -2.5914 19 1 5.0015 -3.2112 -1.6166 20 6 4.1239 -4.7396 -2.8358 21 7 3.8918 -5.1273 -4.0720 22 14 3.2990 -5.6209 -1.4101 23 1 3.7219 -4.9965 -0.1309 24 1 1.8243 -5.5142 -1.5488 25 1 3.6946 -7.0522 -1.4175 26 7 2.0183 -0.6906 1.1962 27 6 2.1470 -0.0183 2.3571 28 7 2.5957 -0.6537 3.4577 29 8 1.8574 1.1614 2.4119 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -1.7716 -1.2055 34 1 1.6054 -0.2618 -2.1370 35 1 3.7326 -1.6559 -3.0287 36 1 5.9631 -0.0267 -2.4404 37 1 6.1098 -1.5358 -1.5081 38 1 8.0039 -0.6585 -3.8499 39 1 8.1398 -2.0735 -2.7775 40 1 9.3112 -2.4550 -4.9386 41 1 7.7811 -2.1804 -5.8054 42 1 8.1622 -5.5481 -3.1937 43 1 9.5241 -4.4176 -3.3824 44 1 8.0524 -3.9027 -2.5237 45 1 7.9615 -4.4958 -6.7599 46 1 9.4710 -4.7638 -5.8556 47 1 8.1091 -5.8946 -5.6693 48 1 6.0399 -5.1539 -4.3654 49 1 5.8946 -3.8633 -5.5844 50 1 3.2927 -5.8709 -4.2427 51 1 2.2490 -1.6318 1.1527 52 1 2.8264 -1.5949 3.4142 53 1 2.6880 -0.1699 4.2934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099069137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = -86.183001 kcal Electronic energy + Delta-G solvation = -32189.912480 eV Core-core repulsion = 28095.505797 eV Total energy + Delta-G solvation = -4094.406683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.20573 -40.55284 -39.81770 -36.96427 -36.30419 -34.90702 -34.69637 -33.64486 -31.86286 -31.70442 -29.65783 -28.05677 -28.00846 -27.27846 -24.93146 -23.86975 -23.21092 -21.74062 -21.66057 -20.98231 -19.44042 -19.29642 -18.49271 -18.10699 -17.52473 -17.20700 -16.66648 -16.51091 -16.07105 -15.89017 -15.59498 -15.32257 -15.27449 -15.11332 -14.85624 -14.70769 -14.46205 -13.98141 -13.86272 -13.73928 -13.35774 -13.23794 -12.96919 -12.88338 -12.79706 -12.73179 -12.68201 -12.48766 -12.43965 -12.14987 -12.09115 -11.94542 -11.81601 -11.60640 -11.38438 -11.25117 -10.98196 -10.87684 -10.69895 -10.61567 -10.42800 -9.91324 -9.70964 -8.46527 -7.73640 -5.20453 1.44860 1.53544 1.58383 1.86052 2.03785 2.28793 2.48700 2.57271 3.41162 3.62547 3.64661 3.77379 3.95304 4.02973 4.06031 4.21473 4.27148 4.35059 4.43782 4.51215 4.55630 4.63392 4.71331 4.74409 4.78993 4.86882 4.88479 4.95116 4.97838 5.06638 5.07463 5.11381 5.14838 5.18010 5.26874 5.33240 5.41280 5.50995 5.56021 5.61744 5.62516 5.74465 5.78969 5.85520 5.90694 5.91649 6.06920 6.52462 6.85182 7.10359 7.27447 7.49909 7.70984 7.96720 8.51549 9.30604 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.003542 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.807149 B = 7903.599581 C = 8764.416774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.178 3.822 3 H 0.064 0.936 4 C -0.144 4.144 5 C 0.501 3.499 6 O -0.587 6.587 7 N -0.696 5.696 8 C 0.143 3.857 9 C 0.161 3.839 10 H 0.028 0.972 11 C -0.125 4.125 12 C -0.091 4.091 13 C -0.092 4.092 14 C -0.117 4.117 15 C -0.129 4.129 16 C 0.198 3.802 17 N -0.594 5.594 18 C -0.226 4.226 19 H 0.064 0.936 20 C -0.035 4.035 21 N -0.926 5.926 22 Si 0.937 3.063 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.307 1.307 26 N -0.724 5.724 27 C 0.704 3.296 28 N -0.853 5.853 29 O -0.647 6.647 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.412 0.588 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.029 0.971 43 H 0.057 0.943 44 H 0.046 0.954 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.041 0.959 48 H 0.048 0.952 49 H -0.007 1.007 50 H 0.245 0.755 51 H 0.401 0.599 52 H 0.409 0.591 53 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.797 3.707 2.518 4.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.072 3.928 3 H 0.082 0.918 4 C -0.184 4.184 5 C 0.288 3.712 6 O -0.468 6.468 7 N -0.346 5.346 8 C 0.019 3.981 9 C 0.055 3.945 10 H 0.046 0.954 11 C -0.164 4.164 12 C -0.129 4.129 13 C -0.094 4.094 14 C -0.174 4.174 15 C -0.187 4.187 16 C 0.072 3.928 17 N -0.318 5.318 18 C -0.356 4.356 19 H 0.082 0.918 20 C -0.231 4.231 21 N -0.573 5.573 22 Si 0.767 3.233 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.235 1.235 26 N -0.378 5.378 27 C 0.402 3.598 28 N -0.422 5.422 29 O -0.529 6.529 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.151 0.849 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.011 0.989 50 H 0.054 0.946 51 H 0.236 0.764 52 H 0.239 0.761 53 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.835 4.977 2.938 5.839 hybrid contribution -0.478 -1.857 0.606 2.011 sum 0.357 3.120 3.544 4.735 Atomic orbital electron populations 1.22134 0.93213 1.03088 1.02836 1.20485 0.94291 0.96055 0.81937 0.91809 1.22050 0.91189 1.04556 1.00573 1.21001 0.91015 0.78067 0.81077 1.90676 1.71301 1.44899 1.39954 1.46059 1.07639 1.54264 1.26630 1.21131 0.80672 0.98423 0.97888 1.20833 0.94080 0.85210 0.94371 0.95448 1.21955 0.95361 0.99917 0.99205 1.21387 1.00275 0.93723 0.97504 1.21148 0.97207 0.95619 0.95381 1.21612 0.99198 0.99403 0.97178 1.21709 1.00772 0.98883 0.97311 1.20550 0.88671 0.94363 0.89222 1.44183 1.54724 1.02261 1.30617 1.19220 1.12188 1.13360 0.90861 0.91848 1.25498 0.98743 1.02090 0.96726 1.70136 1.39166 1.29308 1.18690 0.85671 0.78443 0.78174 0.81007 1.19523 1.21329 1.23547 1.44984 1.70578 1.13622 1.08639 1.16115 0.77657 0.84415 0.81581 1.42784 1.72541 1.15503 1.11373 1.90879 1.59994 1.16406 1.85648 0.93434 0.89513 0.91051 0.87199 0.84859 0.75129 0.91938 0.93931 0.90630 0.92255 0.91074 0.92883 0.95176 0.92374 0.93451 0.93103 0.91436 0.93965 0.93323 0.98921 0.94558 0.76432 0.76066 0.74864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.48 71.98 0.68 -2.61 16 2 C 0.18 4.78 2.13 44.99 0.10 4.88 16 3 H 0.06 2.13 7.39 -2.39 -0.02 2.11 16 4 C -0.14 -3.59 5.24 29.85 0.16 -3.43 16 5 C 0.50 16.69 7.69 87.65 0.67 17.37 16 6 O -0.59 -23.59 15.35 -3.02 -0.05 -23.63 16 7 N -0.70 -23.79 3.84 -463.07 -1.78 -25.57 16 8 C 0.14 5.01 4.43 86.38 0.38 5.39 16 9 C 0.16 5.68 3.01 44.97 0.14 5.81 16 10 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 11 C -0.13 -3.71 5.04 30.68 0.15 -3.56 16 12 C -0.09 -2.61 4.71 30.63 0.14 -2.47 16 13 C -0.09 -3.04 0.77 -52.10 -0.04 -3.08 16 14 C -0.12 -3.85 7.99 71.98 0.58 -3.28 16 15 C -0.13 -3.70 8.48 71.98 0.61 -3.09 16 16 C 0.20 8.39 3.94 86.37 0.34 8.73 16 17 N -0.59 -24.89 2.41 -675.22 -1.63 -26.52 16 18 C -0.23 -10.30 6.97 84.03 0.59 -9.72 16 19 H 0.06 2.98 5.86 -2.90 -0.02 2.96 16 20 C -0.03 -1.67 4.97 84.86 0.42 -1.25 16 21 N -0.93 -48.26 11.23 21.65 0.24 -48.01 16 22 Si 0.94 39.85 29.58 68.60 2.03 41.88 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.31 -13.90 7.11 99.48 0.71 -13.20 16 26 N -0.72 -19.90 4.22 -457.83 -1.93 -21.84 16 27 C 0.70 21.62 8.80 179.06 1.58 23.20 16 28 N -0.85 -18.14 8.88 -184.75 -1.64 -19.78 16 29 O -0.65 -25.45 16.84 -4.00 -0.07 -25.52 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.41 14.67 7.39 -92.70 -0.69 13.98 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.04 1.67 7.42 -2.39 -0.02 1.65 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 1.85 6.35 -2.38 -0.02 1.84 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.05 1.72 5.98 -2.39 -0.01 1.71 16 45 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.05 2.42 6.19 -2.39 -0.01 2.41 16 49 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 50 H 0.24 12.71 8.31 -92.71 -0.77 11.94 16 51 H 0.40 9.79 8.62 -92.71 -0.80 8.99 16 52 H 0.41 6.47 8.84 -92.71 -0.82 5.65 16 53 H 0.42 7.64 8.93 -92.70 -0.83 6.81 16 Total: -1.00 -66.59 408.89 -0.52 -67.11 By element: Atomic # 1 Polarization: 51.18 SS G_CDS: -2.19 Total: 48.99 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 6.50 Total: 32.89 kcal Atomic # 7 Polarization: -134.99 SS G_CDS: -6.74 Total: -141.72 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -0.11 Total: -49.15 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -66.59 -0.52 -67.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099069137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.075 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds