Wall clock time and date at job start Sat Apr 11 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.35205 * 2 1 4 4 C 1.53996 * 110.30856 * 237.86100 * 2 1 3 5 5 N 1.47903 * 107.05754 * 242.30927 * 4 2 1 6 6 C 1.46897 * 111.00141 * 214.15793 * 5 4 2 7 7 C 1.50703 * 109.47105 * 287.39324 * 6 5 4 8 8 O 1.21289 * 119.99698 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00222 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00307 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99879 * 0.02562 * 10 9 7 12 12 C 1.38945 * 120.00368 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99923 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00268 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47027 * 59.99847 * 14 12 10 16 16 H 1.48497 * 109.47217 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47212 * 300.00316 * 14 12 10 18 18 C 1.48537 * 105.81802 * 334.66722 * 5 4 2 19 19 C 1.54591 * 110.31038 * 122.14547 * 2 1 3 20 20 H 1.08998 * 110.87852 * 22.43675 * 19 2 1 21 21 C 1.53005 * 110.71892 * 259.23330 * 19 2 1 22 22 N 1.46505 * 109.46784 * 180.02562 * 21 19 2 23 23 C 1.34777 * 120.00115 * 179.97438 * 22 21 19 24 24 O 1.21282 * 119.99620 * 359.97438 * 23 22 21 25 25 C 1.50697 * 120.00369 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.47466 * 180.02562 * 25 23 22 27 27 N 1.46899 * 109.47254 * 179.97438 * 26 25 23 28 28 C 1.46901 * 111.00103 * 169.99667 * 27 26 25 29 29 C 1.46902 * 111.00255 * 293.95367 * 27 26 25 30 30 H 1.08995 * 109.47256 * 297.86150 * 1 2 3 31 31 H 1.08997 * 109.47073 * 57.85861 * 1 2 3 32 32 H 1.08998 * 109.46931 * 177.85099 * 1 2 3 33 33 H 1.09006 * 109.91818 * 122.95497 * 4 2 1 34 34 H 1.08997 * 109.91917 * 1.65645 * 4 2 1 35 35 H 1.09006 * 109.47171 * 47.39394 * 6 5 4 36 36 H 1.08998 * 109.47298 * 167.39366 * 6 5 4 37 37 H 0.97002 * 119.99922 * 0.02562 * 9 7 6 38 38 H 0.97004 * 120.00173 * 179.97438 * 13 12 10 39 39 H 1.08997 * 110.66851 * 280.77678 * 18 5 4 40 40 H 1.09000 * 110.66473 * 157.63830 * 18 5 4 41 41 H 1.09002 * 109.47193 * 60.04718 * 21 19 2 42 42 H 1.08992 * 109.47333 * 300.03717 * 21 19 2 43 43 H 0.97003 * 120.00244 * 359.97438 * 22 21 19 44 44 H 1.09002 * 109.47120 * 59.99760 * 25 23 22 45 45 H 1.08998 * 109.46862 * 300.00562 * 25 23 22 46 46 H 1.09002 * 109.47153 * 59.99773 * 26 25 23 47 47 H 1.09001 * 109.46832 * 299.99964 * 26 25 23 48 48 H 1.09007 * 109.46694 * 60.00180 * 28 27 26 49 49 H 1.08996 * 109.47015 * 179.97438 * 28 27 26 50 50 H 1.08997 * 109.47268 * 300.00786 * 28 27 26 51 51 H 1.09005 * 109.46528 * 59.99744 * 29 27 26 52 52 H 1.09000 * 109.46785 * 179.97438 * 29 27 26 53 53 H 1.08997 * 109.47044 * 300.00388 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0645 -0.7683 -1.2229 5 7 2.8313 -1.9236 -0.7083 6 6 3.9751 -2.2262 -1.5789 7 6 3.4809 -2.8476 -2.8598 8 8 2.2927 -3.0209 -3.0307 9 7 4.3592 -3.2099 -3.8157 10 6 3.9097 -3.7757 -4.9808 11 1 2.8517 -3.9308 -5.1327 12 6 4.8151 -4.1497 -5.9661 13 7 6.1024 -3.9615 -5.7811 14 14 4.2025 -4.9200 -7.5538 15 1 3.2917 -3.9721 -8.2446 16 1 5.3589 -5.2264 -8.4337 17 1 3.4699 -6.1743 -7.2451 18 6 3.2855 -1.5348 0.6514 19 6 2.0666 -0.7714 1.2275 20 1 1.3186 -1.4682 1.6058 21 6 2.5052 0.1983 2.3268 22 7 3.0086 -0.5603 3.4747 23 6 3.4537 0.0889 4.5687 24 8 3.4380 1.3012 4.6026 25 6 3.9721 -0.6913 5.7492 26 6 4.4106 0.2782 6.8485 27 7 4.9152 -0.4824 7.9995 28 6 5.5621 0.4057 8.9747 29 6 3.8399 -1.2608 8.6286 30 1 -0.3633 0.4802 0.9085 31 1 -0.3633 0.5467 -0.8701 32 1 -0.3633 -1.0269 -0.0385 33 1 2.7162 -0.1225 -1.8114 34 1 1.2327 -1.1176 -1.8346 35 1 4.5128 -1.3055 -1.8055 36 1 4.6437 -2.9219 -1.0718 37 1 5.3094 -3.0710 -3.6791 38 1 6.7346 -4.2229 -6.4688 39 1 4.1563 -0.8817 0.5940 40 1 3.5046 -2.4182 1.2511 41 1 1.6542 0.8045 2.6373 42 1 3.2938 0.8469 1.9457 43 1 3.0215 -1.5299 3.4474 44 1 4.8228 -1.2978 5.4386 45 1 3.1834 -1.3399 6.1305 46 1 3.5596 0.8845 7.1590 47 1 5.1991 0.9271 6.4674 48 1 4.8405 1.1410 9.3309 49 1 5.9261 -0.1830 9.8166 50 1 6.3989 0.9182 8.5002 51 1 3.4249 -1.9598 7.9024 52 1 4.2411 -1.8145 9.4774 53 1 3.0561 -0.5859 8.9722 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102314420.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:02 Heat of formation + Delta-G solvation = -97.212651 kcal Electronic energy + Delta-G solvation = -29407.292215 eV Core-core repulsion = 25312.407251 eV Total energy + Delta-G solvation = -4094.884964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12524 -40.52071 -39.45782 -38.28175 -36.19237 -35.76263 -34.25658 -33.22052 -32.55773 -31.03424 -29.14715 -28.46512 -27.24695 -26.79109 -25.82297 -24.29281 -22.49465 -21.81920 -21.55257 -21.10806 -20.50255 -19.81754 -18.20400 -17.69659 -17.39908 -17.00894 -16.60704 -16.58026 -16.37966 -15.99033 -15.89696 -15.57319 -15.52673 -15.30766 -15.01305 -14.65838 -14.53288 -14.25978 -14.03660 -13.71812 -13.58485 -13.49253 -13.39663 -13.27358 -12.95857 -12.82318 -12.74425 -12.60392 -12.47558 -12.42508 -12.38421 -12.24140 -12.10537 -11.89056 -11.75648 -11.64519 -11.54677 -11.47036 -10.87564 -10.31827 -10.06783 -9.99859 -9.36056 -9.29154 -8.45531 -5.94282 1.40040 1.41589 1.52560 1.66514 2.07379 2.15473 2.29096 2.81673 3.07093 3.20903 3.38441 3.56086 3.64552 3.84499 3.85807 4.00133 4.15290 4.19001 4.28486 4.30925 4.32016 4.40714 4.42507 4.49816 4.52815 4.60360 4.62014 4.64732 4.67801 4.68966 4.71582 4.81220 4.88985 4.94505 4.98252 5.01792 5.04421 5.09379 5.13281 5.19097 5.25679 5.41205 5.42243 5.49200 5.87489 5.99862 6.00452 6.06482 6.11274 6.57652 6.62105 7.14171 7.27581 7.57937 8.14212 8.71689 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.001729 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.279929 B =16185.923906 C =17263.788007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.087 0.913 4 C 0.047 3.953 5 N -0.511 5.511 6 C 0.049 3.951 7 C 0.442 3.558 8 O -0.615 6.615 9 N -0.576 5.576 10 C -0.334 4.334 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.272 1.272 18 C 0.038 3.962 19 C -0.083 4.083 20 H 0.100 0.900 21 C 0.139 3.861 22 N -0.717 5.717 23 C 0.513 3.487 24 O -0.590 6.590 25 C -0.129 4.129 26 C 0.073 3.927 27 N -0.557 5.557 28 C 0.022 3.978 29 C 0.016 3.984 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.417 0.583 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.027 0.973 47 H 0.067 0.933 48 H 0.024 0.976 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.081 0.919 52 H 0.078 0.922 53 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 7.245 27.444 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.081 4.081 5 N -0.235 5.235 6 C -0.082 4.082 7 C 0.229 3.771 8 O -0.501 6.501 9 N -0.214 5.214 10 C -0.463 4.463 11 H 0.096 0.904 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.816 3.184 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.197 1.197 18 C -0.089 4.089 19 C -0.103 4.103 20 H 0.118 0.882 21 C 0.014 3.986 22 N -0.369 5.369 23 C 0.300 3.700 24 O -0.470 6.470 25 C -0.169 4.169 26 C -0.056 4.056 27 N -0.281 5.281 28 C -0.126 4.126 29 C -0.132 4.132 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.229 0.771 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.254 0.746 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.046 0.954 47 H 0.086 0.914 48 H 0.042 0.958 49 H 0.100 0.900 50 H 0.087 0.913 51 H 0.100 0.900 52 H 0.096 0.904 53 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.075 7.133 27.060 28.153 hybrid contribution 0.280 0.625 -1.021 1.230 sum -2.795 7.758 26.038 27.313 Atomic orbital electron populations 1.21782 0.93441 1.01910 1.02302 1.21953 0.97222 0.98982 0.92590 0.89484 1.22893 0.97840 0.90251 0.97097 1.64384 1.19746 1.37116 1.02293 1.21930 0.93462 1.00816 0.92042 1.20792 0.86482 0.83474 0.86373 1.90479 1.17908 1.60369 1.81340 1.41930 1.09094 1.55052 1.15304 1.19619 0.94167 1.38143 0.94389 0.90384 1.26020 0.95045 0.97789 1.02391 1.69667 1.01695 1.48148 1.36700 0.84998 0.77767 0.78553 0.77068 1.19791 1.19481 1.19702 1.23441 0.96555 0.99841 0.89051 1.22271 0.97496 0.96744 0.93752 0.88185 1.21229 0.98824 0.93608 0.84908 1.45942 1.64170 1.11353 1.15455 1.21082 0.76470 0.87891 0.84521 1.90701 1.57250 1.16278 1.82799 1.21604 1.04082 0.98957 0.92220 1.21733 0.98696 0.94404 0.90728 1.62008 1.30467 1.26640 1.08987 1.22423 0.98664 0.95763 0.95709 1.22552 0.92601 0.97814 1.00242 0.90805 0.92783 0.93089 0.95211 0.92375 0.91674 0.87113 0.77107 0.91343 0.92987 0.88261 0.91320 0.92301 0.74650 0.86364 0.86641 0.95446 0.91436 0.95783 0.90036 0.91318 0.90010 0.90366 0.95823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.89 71.98 0.64 -2.07 16 2 C -0.09 -1.87 3.17 -9.92 -0.03 -1.91 16 3 H 0.09 1.68 7.85 -2.39 -0.02 1.66 16 4 C 0.05 1.46 5.53 86.45 0.48 1.94 16 5 N -0.51 -15.92 4.91 -887.55 -4.36 -20.28 16 6 C 0.05 1.70 5.27 85.56 0.45 2.15 16 7 C 0.44 21.21 7.61 87.66 0.67 21.88 16 8 O -0.62 -34.31 14.87 -3.06 -0.05 -34.36 16 9 N -0.58 -29.85 5.29 -306.99 -1.62 -31.47 16 10 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 11 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 13 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 14 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 C 0.04 0.79 5.66 86.65 0.49 1.28 16 19 C -0.08 -1.45 2.66 -9.59 -0.03 -1.48 16 20 H 0.10 1.65 7.87 -2.39 -0.02 1.63 16 21 C 0.14 2.24 4.99 86.38 0.43 2.67 16 22 N -0.72 -9.54 5.40 -463.05 -2.50 -12.04 16 23 C 0.51 8.80 7.83 87.66 0.69 9.48 16 24 O -0.59 -15.51 15.98 -3.04 -0.05 -15.56 16 25 C -0.13 -1.44 5.62 29.85 0.17 -1.27 16 26 C 0.07 1.09 4.25 86.30 0.37 1.45 16 27 N -0.56 -7.13 5.02 -948.84 -4.76 -11.89 16 28 C 0.02 0.25 9.57 127.69 1.22 1.47 16 29 C 0.02 0.15 9.32 127.69 1.19 1.34 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.03 0.95 7.52 -2.38 -0.02 0.93 16 34 H 0.06 2.20 7.07 -2.39 -0.02 2.18 16 35 H 0.07 2.06 7.73 -2.38 -0.02 2.04 16 36 H 0.11 3.32 8.08 -2.39 -0.02 3.30 16 37 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 38 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 39 H 0.05 1.03 7.89 -2.39 -0.02 1.01 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 43 H 0.42 3.38 8.33 -92.71 -0.77 2.60 16 44 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.12 0.80 6.55 -2.39 -0.02 0.79 16 46 H 0.03 0.48 8.08 -2.39 -0.02 0.46 16 47 H 0.07 1.20 8.02 -2.39 -0.02 1.18 16 48 H 0.02 0.27 8.14 -2.38 -0.02 0.25 16 49 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 50 H 0.07 0.76 8.12 -2.39 -0.02 0.75 16 51 H 0.08 0.57 6.47 -2.38 -0.02 0.55 16 52 H 0.08 0.59 8.12 -2.39 -0.02 0.57 16 53 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -74.55 423.38 -3.62 -78.17 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -0.61 Total: 33.50 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 8.01 Total: 18.42 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -12.96 Total: -125.36 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.09 Total: -49.92 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.55 -3.62 -78.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102314420.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.042 kcal (2) G-P(sol) polarization free energy of solvation -74.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds