Wall clock time and date at job start Sat Apr 11 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.91638 * 2 1 4 4 C 1.54913 * 111.00158 * 236.09760 * 2 1 3 5 5 N 1.47431 * 104.82840 * 204.91529 * 4 2 1 6 6 C 1.36944 * 125.64329 * 204.09136 * 5 4 2 7 7 H 1.08004 * 119.99160 * 180.02562 * 6 5 4 8 8 C 1.38805 * 119.99978 * 0.04579 * 6 5 4 9 9 N 1.31618 * 120.00451 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99585 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46946 * 60.00028 * 10 8 6 12 12 H 1.48503 * 109.47252 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47236 * 300.00129 * 10 8 6 14 14 C 1.47016 * 108.70119 * 24.13009 * 5 4 2 15 15 C 1.54314 * 107.27616 * 358.94179 * 14 5 4 16 16 H 1.09000 * 110.72792 * 96.34819 * 15 14 5 17 17 C 1.53003 * 110.72198 * 219.44558 * 15 14 5 18 18 N 1.46505 * 109.46755 * 293.54242 * 17 15 14 19 19 C 1.34774 * 119.99703 * 179.97438 * 18 17 15 20 20 O 1.21283 * 120.00351 * 355.40255 * 19 18 17 21 21 C 1.50703 * 119.99760 * 175.40710 * 19 18 17 22 22 H 1.08996 * 109.47033 * 318.53620 * 21 19 18 23 23 N 1.46504 * 109.46837 * 198.54287 * 21 19 18 24 24 C 1.34775 * 119.99938 * 155.00148 * 23 21 19 25 25 N 1.34777 * 120.00064 * 179.97438 * 24 23 21 26 26 O 1.21587 * 119.99830 * 359.97438 * 24 23 21 27 27 C 1.52996 * 109.47084 * 78.54402 * 21 19 18 28 28 C 1.53006 * 109.46746 * 182.54474 * 27 21 19 29 29 C 1.53000 * 109.47234 * 62.54820 * 27 21 19 30 30 C 1.52994 * 109.47279 * 302.54473 * 27 21 19 31 31 H 1.08995 * 109.47321 * 296.10000 * 1 2 3 32 32 H 1.09007 * 109.47181 * 56.09922 * 1 2 3 33 33 H 1.09006 * 109.47324 * 176.09505 * 1 2 3 34 34 H 1.08999 * 110.36571 * 86.07802 * 4 2 1 35 35 H 1.09004 * 110.36808 * 323.75443 * 4 2 1 36 36 H 0.97000 * 119.99777 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.87825 * 239.51619 * 14 5 4 38 38 H 1.09007 * 109.88218 * 118.35985 * 14 5 4 39 39 H 1.09000 * 109.47602 * 173.54416 * 17 15 14 40 40 H 1.08995 * 109.47110 * 53.53988 * 17 15 14 41 41 H 0.97000 * 120.00197 * 0.02562 * 18 17 15 42 42 H 0.96996 * 120.00003 * 334.99527 * 23 21 19 43 43 H 0.96996 * 120.00024 * 0.02562 * 25 24 23 44 44 H 0.96996 * 119.99722 * 179.97438 * 25 24 23 45 45 H 1.08998 * 109.47269 * 299.99859 * 28 27 21 46 46 H 1.08995 * 109.46933 * 60.00425 * 28 27 21 47 47 H 1.09007 * 109.46672 * 179.97438 * 28 27 21 48 48 H 1.08997 * 109.46968 * 180.02562 * 29 27 21 49 49 H 1.08997 * 109.47029 * 299.99428 * 29 27 21 50 50 H 1.08998 * 109.47390 * 59.99767 * 29 27 21 51 51 H 1.09008 * 109.47115 * 300.25072 * 30 27 21 52 52 H 1.09000 * 109.46956 * 60.24974 * 30 27 21 53 53 H 1.08995 * 109.47517 * 180.25190 * 30 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2004 5 7 3.4271 -1.2431 -0.7733 6 6 4.4640 -1.5668 -1.6073 7 1 5.4125 -1.8770 -1.1942 8 6 4.2960 -1.4957 -2.9833 9 7 3.1401 -1.1178 -3.4866 10 14 5.7107 -1.9366 -4.1208 11 1 6.1182 -3.3444 -3.8813 12 1 5.2777 -1.7805 -5.5327 13 1 6.8606 -1.0359 -3.8527 14 6 3.4674 -1.2741 0.6960 15 6 2.0861 -0.8080 1.2022 16 1 1.4478 -1.6632 1.4239 17 6 2.2349 0.0876 2.4338 18 7 2.7615 -0.7013 3.5504 19 6 2.9762 -0.1172 4.7458 20 8 2.8132 1.0777 4.8750 21 6 3.4190 -0.9488 5.9221 22 1 2.8643 -1.8870 5.9330 23 7 3.1614 -0.2148 7.1636 24 6 2.9892 -0.8857 8.3197 25 7 2.7527 -0.2105 9.4619 26 8 3.0470 -2.1002 8.3322 27 6 4.9159 -1.2424 5.8044 28 6 5.3523 -2.1394 6.9645 29 6 5.6987 0.0712 5.8530 30 6 5.1935 -1.9528 4.4781 31 1 -0.3634 0.4521 0.9228 32 1 -0.3634 0.5732 -0.8530 33 1 -0.3634 -1.0253 -0.0700 34 1 2.1559 -0.1720 -2.0837 35 1 1.4518 -1.6704 -1.4025 36 1 3.0230 -1.0678 -4.4482 37 1 4.2426 -0.5998 1.0598 38 1 3.6650 -2.2894 1.0400 39 1 1.2618 0.4969 2.7051 40 1 2.9223 0.9031 2.2091 41 1 2.9562 -1.6437 3.4291 42 1 3.1150 0.7540 7.1535 43 1 2.7062 0.7583 9.4518 44 1 2.6284 -0.6934 10.2938 45 1 5.1546 -1.6333 7.9094 46 1 4.7947 -3.0753 6.9299 47 1 6.4187 -2.3490 6.8804 48 1 6.7651 -0.1380 5.7687 49 1 5.3878 0.7102 5.0265 50 1 5.5009 0.5773 6.7979 51 1 4.6324 -2.8866 4.4416 52 1 4.8866 -1.3119 3.6515 53 1 6.2593 -2.1660 4.3962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102512456.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:13 Heat of formation + Delta-G solvation = -78.930935 kcal Electronic energy + Delta-G solvation = -31672.748021 eV Core-core repulsion = 27578.655811 eV Total energy + Delta-G solvation = -4094.092210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.99993 -40.46680 -39.55555 -37.83308 -36.17886 -35.00209 -34.64496 -33.81828 -32.53946 -31.05560 -28.68542 -28.20914 -27.85368 -27.63765 -26.37689 -24.40634 -22.35427 -22.09909 -21.40866 -20.90878 -19.99867 -19.58028 -18.83493 -18.51901 -17.46530 -17.25915 -17.08372 -16.71746 -16.20930 -15.96607 -15.76735 -15.54858 -15.20711 -15.07917 -14.83102 -14.55545 -14.46575 -14.18569 -13.97096 -13.76098 -13.51632 -13.35944 -13.08112 -12.99773 -12.91644 -12.75998 -12.64764 -12.56127 -12.45432 -12.27733 -11.99475 -11.90036 -11.81579 -11.73480 -11.57772 -11.38956 -11.35148 -11.22094 -10.85491 -10.71253 -10.57742 -10.10723 -9.95303 -8.85214 -7.75208 -5.19172 1.44686 1.47000 1.49615 1.55907 1.69314 2.16876 2.36416 2.50743 3.33912 3.47882 3.61211 3.67586 3.71555 3.83446 3.85340 3.91739 4.00045 4.07376 4.33296 4.40326 4.48157 4.52268 4.64599 4.71741 4.77728 4.78706 4.82120 4.87719 4.89014 4.99486 5.00517 5.03052 5.11001 5.11845 5.18471 5.25638 5.31038 5.35398 5.40875 5.42527 5.43492 5.48404 5.52974 5.74664 5.86512 5.87245 6.08341 6.34234 6.43710 7.04575 7.10151 7.13534 7.67590 7.81792 8.45109 9.26065 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.002666 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.781387 B =10498.681453 C =11621.654477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.067 0.933 4 C 0.162 3.838 5 N -0.628 5.628 6 C -0.237 4.237 7 H 0.080 0.920 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.977 3.023 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.093 0.907 17 C 0.145 3.855 18 N -0.712 5.712 19 C 0.519 3.481 20 O -0.564 6.564 21 C 0.160 3.840 22 H 0.109 0.891 23 N -0.721 5.721 24 C 0.705 3.295 25 N -0.849 5.849 26 O -0.625 6.625 27 C -0.067 4.067 28 C -0.118 4.118 29 C -0.137 4.137 30 C -0.160 4.160 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.068 0.932 35 H -0.011 1.011 36 H 0.246 0.754 37 H 0.023 0.977 38 H 0.028 0.972 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.412 0.588 42 H 0.411 0.589 43 H 0.412 0.588 44 H 0.422 0.578 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.060 0.940 51 H 0.072 0.928 52 H 0.057 0.943 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 2.919 24.792 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.085 0.915 4 C 0.037 3.963 5 N -0.354 5.354 6 C -0.366 4.366 7 H 0.097 0.903 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.805 3.195 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.014 3.986 15 C -0.111 4.111 16 H 0.112 0.888 17 C 0.021 3.979 18 N -0.365 5.365 19 C 0.305 3.695 20 O -0.443 6.443 21 C 0.050 3.950 22 H 0.127 0.873 23 N -0.378 5.378 24 C 0.403 3.597 25 N -0.418 5.418 26 O -0.506 6.506 27 C -0.069 4.069 28 C -0.176 4.176 29 C -0.195 4.195 30 C -0.218 4.218 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.007 0.993 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.250 0.750 42 H 0.248 0.752 43 H 0.242 0.758 44 H 0.256 0.744 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.079 0.921 51 H 0.090 0.910 52 H 0.076 0.924 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.542 2.755 24.522 24.724 hybrid contribution 0.702 -0.010 -0.887 1.132 sum -0.840 2.745 23.634 23.808 Atomic orbital electron populations 1.21607 0.92862 1.01879 1.02184 1.22424 0.96652 0.98377 0.94510 0.91476 1.21766 0.83757 0.94883 0.95937 1.44796 1.10426 1.78995 1.01177 1.19396 0.91973 1.37206 0.88010 0.90259 1.25596 0.99621 1.02637 0.98144 1.70050 1.24088 1.54927 1.10747 0.85176 0.78568 0.78162 0.77574 1.20443 1.22066 1.20422 1.21496 0.95581 0.97629 0.83930 1.22351 0.96555 0.98610 0.93583 0.88839 1.21236 0.99252 0.93320 0.84104 1.46132 1.65379 1.14639 1.10331 1.20641 0.76282 0.88061 0.84476 1.90669 1.53119 1.15966 1.84590 1.20663 0.97324 0.95108 0.81885 0.87337 1.44654 1.77023 1.10639 1.05513 1.15980 0.77317 0.85106 0.81319 1.42790 1.78667 1.11639 1.08729 1.90967 1.60299 1.13139 1.86156 1.20843 0.91975 0.96790 0.97274 1.21751 1.00530 0.98864 0.96423 1.21822 1.00238 0.95727 1.01671 1.22156 1.03504 1.00823 0.95291 0.90693 0.92806 0.92829 0.91427 0.99299 0.94424 0.95918 0.95423 0.90281 0.92522 0.75018 0.75201 0.75822 0.74443 0.93220 0.92776 0.92368 0.91659 0.93913 0.92065 0.90951 0.92387 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.31 71.98 0.67 -2.89 16 2 C -0.10 -3.47 3.09 -9.40 -0.03 -3.49 16 3 H 0.07 2.40 8.05 -2.39 -0.02 2.39 16 4 C 0.16 7.75 5.36 86.86 0.47 8.22 16 5 N -0.63 -31.61 3.39 -691.98 -2.35 -33.95 16 6 C -0.24 -13.14 10.27 84.03 0.86 -12.28 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 8 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 9 N -0.95 -56.31 10.09 21.65 0.22 -56.10 16 10 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 14 C 0.14 5.30 6.52 86.73 0.57 5.86 16 15 C -0.09 -2.76 2.48 -9.61 -0.02 -2.78 16 16 H 0.09 2.57 8.04 -2.39 -0.02 2.55 16 17 C 0.14 3.70 5.00 86.38 0.43 4.13 16 18 N -0.71 -15.72 4.15 -463.05 -1.92 -17.64 16 19 C 0.52 11.92 5.47 87.66 0.48 12.40 16 20 O -0.56 -15.77 15.70 -3.04 -0.05 -15.82 16 21 C 0.16 3.15 1.97 44.24 0.09 3.24 16 22 H 0.11 2.22 7.58 -2.39 -0.02 2.21 16 23 N -0.72 -12.54 4.09 -461.41 -1.89 -14.43 16 24 C 0.70 12.88 7.29 179.05 1.31 14.18 16 25 N -0.85 -8.16 8.88 -184.75 -1.64 -9.80 16 26 O -0.62 -16.00 14.31 -3.99 -0.06 -16.06 16 27 C -0.07 -1.25 0.62 -52.18 -0.03 -1.28 16 28 C -0.12 -2.28 7.03 71.98 0.51 -1.77 16 29 C -0.14 -2.59 8.08 71.98 0.58 -2.01 16 30 C -0.16 -2.96 7.27 71.98 0.52 -2.43 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.49 8.07 -2.38 -0.02 1.47 16 34 H 0.07 3.78 5.87 -2.39 -0.01 3.76 16 35 H -0.01 -0.57 7.98 -2.39 -0.02 -0.58 16 36 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.02 0.88 7.77 -2.39 -0.02 0.86 16 38 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.66 8.06 -2.39 -0.02 1.64 16 41 H 0.41 7.98 6.80 -92.71 -0.63 7.35 16 42 H 0.41 6.47 7.74 -92.71 -0.72 5.75 16 43 H 0.41 1.74 8.84 -92.71 -0.82 0.92 16 44 H 0.42 3.12 8.93 -92.71 -0.83 2.29 16 45 H 0.05 1.03 5.71 -2.39 -0.01 1.02 16 46 H 0.05 1.16 7.69 -2.39 -0.02 1.15 16 47 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.04 0.95 7.13 -2.39 -0.02 0.94 16 50 H 0.06 1.07 7.54 -2.39 -0.02 1.05 16 51 H 0.07 1.18 8.11 -2.38 -0.02 1.16 16 52 H 0.06 1.21 5.84 -2.39 -0.01 1.20 16 53 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -72.26 405.62 -0.85 -73.11 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -2.05 Total: 27.38 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.86 Total: 15.75 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -7.58 Total: -131.93 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.10 Total: -31.88 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.26 -0.85 -73.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102512456.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.824 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds