Wall clock time and date at job start Sat Apr 11 2020 06:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.91442 * 2 1 4 4 C 1.54910 * 111.00375 * 236.10339 * 2 1 3 5 5 N 1.47421 * 104.82967 * 204.91353 * 4 2 1 6 6 C 1.34781 * 125.65067 * 204.08761 * 5 4 2 7 7 O 1.21276 * 120.00479 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99312 * 0.04962 * 6 5 4 9 9 C 1.53010 * 109.46644 * 179.97438 * 8 6 5 10 10 N 1.46900 * 109.46879 * 179.97438 * 9 8 6 11 11 C 1.46904 * 110.99585 * 66.04704 * 10 9 8 12 12 C 1.46901 * 110.99978 * 189.99435 * 10 9 8 13 13 C 1.47027 * 108.70609 * 24.13009 * 5 4 2 14 14 C 1.54321 * 107.26617 * 358.93681 * 13 5 4 15 15 H 1.09005 * 110.72064 * 96.35188 * 14 13 5 16 16 C 1.53006 * 110.71843 * 219.44610 * 14 13 5 17 17 N 1.46901 * 109.47014 * 293.54624 * 16 14 13 18 18 C 1.46902 * 110.99983 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.46978 * 180.02562 * 18 17 16 20 20 O 1.21295 * 120.00238 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00076 * 180.02562 * 19 18 17 22 22 C 1.37105 * 120.00244 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99708 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00017 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99901 * 359.71836 * 24 22 21 26 26 Si 1.86800 * 120.00194 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72210 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72333 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72143 * 26 24 22 30 30 H 1.08998 * 109.46842 * 296.09489 * 1 2 3 31 31 H 1.09002 * 109.46908 * 56.09546 * 1 2 3 32 32 H 1.08998 * 109.46552 * 176.09692 * 1 2 3 33 33 H 1.08998 * 110.36719 * 86.07693 * 4 2 1 34 34 H 1.08997 * 110.46137 * 323.79630 * 4 2 1 35 35 H 1.08997 * 109.47160 * 299.99284 * 8 6 5 36 36 H 1.08988 * 109.47693 * 59.99784 * 8 6 5 37 37 H 1.08997 * 109.46934 * 299.99638 * 9 8 6 38 38 H 1.09002 * 109.47164 * 59.99723 * 9 8 6 39 39 H 1.08998 * 109.47549 * 60.00112 * 11 10 9 40 40 H 1.09001 * 109.46902 * 179.97438 * 11 10 9 41 41 H 1.08996 * 109.47262 * 299.99553 * 11 10 9 42 42 H 1.09005 * 109.46570 * 60.00143 * 12 10 9 43 43 H 1.09000 * 109.47223 * 180.02562 * 12 10 9 44 44 H 1.08994 * 109.47478 * 300.00889 * 12 10 9 45 45 H 1.09002 * 109.87786 * 239.52037 * 13 5 4 46 46 H 1.08997 * 110.01531 * 118.43004 * 13 5 4 47 47 H 1.09002 * 109.47001 * 173.54915 * 16 14 13 48 48 H 1.08992 * 109.47083 * 53.54606 * 16 14 13 49 49 H 1.00903 * 110.99970 * 303.95843 * 17 16 14 50 50 H 1.08999 * 109.46697 * 60.00741 * 18 17 16 51 51 H 1.08993 * 109.47253 * 300.00391 * 18 17 16 52 52 H 0.97004 * 119.99652 * 359.97438 * 21 19 18 53 53 H 0.97000 * 120.00371 * 0.28325 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2429 -0.7734 6 6 4.4477 -1.5614 -1.5941 7 8 5.5128 -1.9098 -1.1304 8 6 4.2654 -1.4842 -3.0881 9 6 5.5659 -1.8938 -3.7824 10 7 5.3880 -1.8191 -5.2387 11 6 5.1819 -0.4310 -5.6732 12 6 6.5269 -2.4267 -5.9400 13 6 3.4675 -1.2741 0.6959 14 6 2.0862 -0.8079 1.2021 15 1 1.4479 -1.6633 1.4238 16 6 2.2350 0.0876 2.4338 17 7 2.7630 -0.7035 3.5534 18 6 2.9200 0.1256 4.7559 19 6 3.4629 -0.7180 5.8803 20 8 3.6957 -1.8944 5.6981 21 7 3.6889 -0.1657 7.0888 22 6 4.1834 -0.9331 8.1117 23 1 4.3914 -1.9804 7.9491 24 6 4.4168 -0.3636 9.3573 25 7 4.1688 0.9120 9.5535 26 14 5.0898 -1.4093 10.7512 27 1 5.2549 -0.5696 11.9649 28 1 4.1437 -2.5169 11.0404 29 1 6.4058 -1.9727 10.3564 30 1 -0.3633 0.4520 0.9229 31 1 -0.3633 0.5733 -0.8530 32 1 -0.3632 -1.0253 -0.0700 33 1 2.1560 -0.1718 -2.0837 34 1 1.4526 -1.6703 -1.4044 35 1 3.4636 -2.1573 -3.3915 36 1 4.0091 -0.4632 -3.3706 37 1 6.3674 -1.2204 -3.4789 38 1 5.8226 -2.9148 -3.4999 39 1 6.0485 0.1691 -5.3958 40 1 5.0535 -0.4044 -6.7553 41 1 4.2913 -0.0278 -5.1913 42 1 6.6140 -3.4743 -5.6517 43 1 6.3697 -2.3574 -7.0163 44 1 7.4421 -1.8989 -5.6721 45 1 4.2427 -0.5997 1.0598 46 1 3.6663 -2.2883 1.0422 47 1 1.2619 0.4969 2.7051 48 1 2.9224 0.9031 2.2091 49 1 2.1766 -1.5033 3.7392 50 1 1.9518 0.5355 5.0435 51 1 3.6123 0.9412 4.5470 52 1 3.5024 0.7750 7.2346 53 1 3.8190 1.4550 8.8298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106622741.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:32 Heat of formation + Delta-G solvation = -97.638001 kcal Electronic energy + Delta-G solvation = -29393.047760 eV Core-core repulsion = 25298.144351 eV Total energy + Delta-G solvation = -4094.903409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.33896 -40.34522 -39.38988 -38.20791 -36.85448 -36.10846 -33.99564 -33.15065 -32.55226 -31.34980 -28.58074 -28.49697 -27.35683 -26.78402 -25.77878 -24.76522 -22.66239 -22.07175 -21.66095 -21.01418 -20.21507 -19.98259 -18.37410 -18.06809 -17.51908 -17.04237 -16.90625 -16.72851 -16.29892 -15.85499 -15.75064 -15.63688 -15.50968 -15.33277 -15.12169 -14.80748 -14.56749 -14.19016 -14.06222 -13.77887 -13.61164 -13.38991 -13.34863 -13.24016 -13.09368 -12.92807 -12.77781 -12.72097 -12.63798 -12.46099 -12.42638 -11.98193 -11.92849 -11.90838 -11.83548 -11.66766 -11.54123 -11.47763 -10.96866 -10.43066 -10.12566 -9.72196 -9.41668 -9.36824 -8.94439 -6.08336 1.51223 1.53377 1.55279 1.81654 1.89627 1.99302 2.39033 2.77298 2.95549 3.15081 3.29868 3.50559 3.56322 3.73270 3.81074 3.93469 4.05445 4.10965 4.20330 4.26962 4.31640 4.37365 4.41924 4.45893 4.47136 4.48748 4.52797 4.62985 4.65673 4.66096 4.69552 4.72665 4.86042 4.90561 4.91605 4.94390 4.98591 5.05304 5.07976 5.15440 5.24940 5.34131 5.50938 5.57358 5.91591 5.93718 5.97696 6.02341 6.33817 6.49078 6.56685 6.73106 7.08977 7.42617 7.91356 8.53376 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.001754 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.976084 B =15956.747568 C =17191.705113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.093 0.907 4 C 0.100 3.900 5 N -0.620 5.620 6 C 0.517 3.483 7 O -0.597 6.597 8 C -0.116 4.116 9 C 0.072 3.928 10 N -0.552 5.552 11 C 0.015 3.985 12 C 0.022 3.978 13 C 0.122 3.878 14 C -0.083 4.083 15 H 0.090 0.910 16 C 0.073 3.927 17 N -0.689 5.689 18 C 0.068 3.932 19 C 0.439 3.561 20 O -0.619 6.619 21 N -0.586 5.586 22 C -0.413 4.413 23 H 0.071 0.929 24 C -0.041 4.041 25 N -0.915 5.915 26 Si 1.133 2.867 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.276 1.276 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.021 0.979 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.021 0.979 45 H 0.046 0.954 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.345 0.655 50 H 0.073 0.927 51 H 0.101 0.899 52 H 0.385 0.615 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.441 3.202 -32.117 33.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.111 0.889 4 C -0.022 4.022 5 N -0.353 5.353 6 C 0.307 3.693 7 O -0.478 6.478 8 C -0.155 4.155 9 C -0.057 4.057 10 N -0.276 5.276 11 C -0.132 4.132 12 C -0.126 4.126 13 C -0.001 4.001 14 C -0.102 4.102 15 H 0.108 0.892 16 C -0.055 4.055 17 N -0.321 5.321 18 C -0.065 4.065 19 C 0.227 3.773 20 O -0.505 6.505 21 N -0.226 5.226 22 C -0.542 4.542 23 H 0.089 0.911 24 C -0.239 4.239 25 N -0.554 5.554 26 Si 0.953 3.047 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.201 1.201 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.040 0.960 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.164 0.836 50 H 0.090 0.910 51 H 0.119 0.881 52 H 0.219 0.781 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.959 2.063 -30.781 31.860 hybrid contribution -0.167 0.783 -0.547 0.969 sum -8.126 2.846 -31.328 32.490 Atomic orbital electron populations 1.21698 0.91737 1.02901 1.03123 1.22383 0.97508 0.99128 0.91830 0.88895 1.22741 0.81287 0.99442 0.98681 1.48692 1.13626 1.66299 1.06672 1.21069 0.82078 0.75890 0.90234 1.90718 1.28306 1.49772 1.78978 1.21549 1.00510 1.05966 0.87524 1.21729 0.95516 1.01120 0.87287 1.62032 1.41810 1.19407 1.04389 1.22570 1.01127 0.87276 1.02261 1.22437 0.90686 0.99650 0.99846 1.21747 0.98528 1.00162 0.79642 1.22247 0.94336 0.99028 0.94623 0.89193 1.22028 0.98988 0.95434 0.89070 1.60041 1.56703 1.10251 1.05143 1.21511 1.01148 0.95183 0.88638 1.20959 0.83264 0.88827 0.84218 1.90505 1.57773 1.18982 1.83222 1.41990 1.58748 1.11719 1.10113 1.20528 1.44821 0.96051 0.92796 0.91058 1.27816 0.96455 0.98367 1.01302 1.70971 1.42892 1.06318 1.35266 0.82635 0.76477 0.73329 0.72249 1.19538 1.19686 1.20141 0.92049 0.90379 0.91945 0.87657 0.89519 0.86138 0.86414 0.95810 0.91691 0.96081 0.89928 0.89870 0.91410 0.89581 0.95985 0.93504 0.94159 0.92436 0.90731 0.83606 0.90960 0.88065 0.78069 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.31 71.98 0.67 -0.25 16 2 C -0.09 -0.93 3.09 -9.40 -0.03 -0.96 16 3 H 0.09 0.93 8.05 -2.38 -0.02 0.92 16 4 C 0.10 1.04 6.16 86.86 0.53 1.57 16 5 N -0.62 -12.72 3.33 -811.80 -2.70 -15.42 16 6 C 0.52 12.48 7.85 87.66 0.69 13.16 16 7 O -0.60 -21.05 16.31 -3.02 -0.05 -21.10 16 8 C -0.12 -1.69 4.63 29.85 0.14 -1.56 16 9 C 0.07 1.31 4.25 86.31 0.37 1.68 16 10 N -0.55 -7.82 5.02 -948.82 -4.76 -12.58 16 11 C 0.02 0.15 9.32 127.69 1.19 1.34 16 12 C 0.02 0.27 9.57 127.69 1.22 1.50 16 13 C 0.12 3.12 6.28 86.73 0.54 3.67 16 14 C -0.08 -1.48 2.60 -9.61 -0.03 -1.50 16 15 H 0.09 1.58 8.04 -2.38 -0.02 1.56 16 16 C 0.07 1.51 5.00 86.31 0.43 1.94 16 17 N -0.69 -21.14 5.93 -517.94 -3.07 -24.21 16 18 C 0.07 2.27 6.17 85.56 0.53 2.79 16 19 C 0.44 21.26 7.82 87.66 0.69 21.94 16 20 O -0.62 -35.45 15.78 -3.08 -0.05 -35.50 16 21 N -0.59 -30.32 5.28 -306.98 -1.62 -31.95 16 22 C -0.41 -24.12 9.68 84.04 0.81 -23.30 16 23 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 24 C -0.04 -2.27 5.50 84.92 0.47 -1.80 16 25 N -0.92 -51.56 13.68 21.66 0.30 -51.26 16 26 Si 1.13 49.43 29.92 68.60 2.05 51.49 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.42 8.07 -2.39 -0.02 0.40 16 33 H 0.11 0.54 7.48 -2.39 -0.02 0.52 16 34 H 0.09 0.71 7.99 -2.39 -0.02 0.69 16 35 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.12 1.11 6.26 -2.39 -0.01 1.09 16 37 H 0.02 0.52 8.08 -2.39 -0.02 0.50 16 38 H 0.06 1.40 8.02 -2.39 -0.02 1.39 16 39 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 41 H 0.08 0.59 6.47 -2.39 -0.02 0.58 16 42 H 0.07 0.87 8.12 -2.38 -0.02 0.85 16 43 H 0.09 0.78 8.12 -2.39 -0.02 0.76 16 44 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 45 H 0.05 1.44 7.77 -2.39 -0.02 1.42 16 46 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 49 H 0.35 11.09 8.43 -89.69 -0.76 10.33 16 50 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 52 H 0.39 18.13 6.73 -92.71 -0.62 17.51 16 53 H 0.26 14.09 6.78 -92.71 -0.63 13.46 16 Total: -1.00 -82.01 424.83 -2.02 -84.03 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.34 Total: 36.28 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 8.23 Total: 20.22 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -11.86 Total: -135.41 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.10 Total: -56.60 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.49 kcal Total: -82.01 -2.02 -84.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106622741.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.607 kcal (2) G-P(sol) polarization free energy of solvation -82.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds