Wall clock time and date at job start Sat Apr 11 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42912 * 109.47109 * 2 1 4 4 C 1.42894 * 113.99469 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.46647 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46978 * 180.02562 * 5 4 3 7 7 N 1.46506 * 109.47019 * 175.11866 * 6 5 4 8 8 C 1.36733 * 127.13142 * 84.27989 * 7 6 5 9 9 C 1.50700 * 126.35357 * 0.02562 * 8 7 6 10 10 C 1.52991 * 109.47257 * 89.99622 * 9 8 7 11 11 H 1.08996 * 109.47496 * 305.00179 * 10 9 8 12 12 C 1.53001 * 109.46962 * 185.00170 * 10 9 8 13 13 O 1.42903 * 109.47147 * 65.00582 * 10 9 8 14 14 N 1.30294 * 107.30173 * 179.97438 * 8 7 6 15 15 N 1.28525 * 110.05601 * 359.97438 * 14 8 7 16 16 C 1.31224 * 109.85636 * 359.74807 * 15 14 8 17 17 N 1.38580 * 126.47058 * 180.25286 * 16 15 14 18 18 C 1.46895 * 111.00445 * 260.82114 * 17 16 15 19 19 C 1.46900 * 111.00169 * 24.77957 * 17 16 15 20 20 H 1.09008 * 109.46718 * 299.99469 * 19 17 16 21 21 C 1.52996 * 109.47464 * 59.99266 * 19 17 16 22 22 C 1.50705 * 109.47359 * 179.97438 * 19 17 16 23 23 H 1.07999 * 119.99551 * 359.97438 * 22 19 17 24 24 C 1.37869 * 120.00164 * 179.97438 * 22 19 17 25 25 N 1.31517 * 119.99920 * 359.97438 * 24 22 19 26 26 Si 1.86797 * 120.00141 * 180.02562 * 24 22 19 27 27 H 1.48499 * 109.46854 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47293 * 119.99918 * 26 24 22 29 29 H 1.48496 * 109.47317 * 239.99795 * 26 24 22 30 30 H 1.09003 * 109.47011 * 59.99852 * 1 2 3 31 31 H 1.08994 * 109.47458 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47107 * 300.00349 * 1 2 3 33 33 H 1.08995 * 109.47530 * 240.00062 * 2 1 3 34 34 H 1.09001 * 109.46809 * 119.99649 * 2 1 3 35 35 H 1.09001 * 109.47536 * 60.00186 * 4 3 2 36 36 H 1.09003 * 109.47750 * 299.99750 * 4 3 2 37 37 H 1.09000 * 109.47254 * 300.00006 * 5 4 3 38 38 H 1.09001 * 109.46985 * 59.99867 * 5 4 3 39 39 H 1.09001 * 109.47092 * 295.12127 * 6 5 4 40 40 H 1.08997 * 109.46940 * 55.12288 * 6 5 4 41 41 H 1.09005 * 109.47188 * 210.00454 * 9 8 7 42 42 H 1.09007 * 109.46835 * 329.99563 * 9 8 7 43 43 H 1.08999 * 109.47105 * 60.00149 * 12 10 9 44 44 H 1.09005 * 109.47220 * 179.97438 * 12 10 9 45 45 H 1.08997 * 109.47502 * 299.99704 * 12 10 9 46 46 H 0.96697 * 114.00077 * 59.99437 * 13 10 9 47 47 H 1.09003 * 109.47195 * 54.82626 * 18 17 16 48 48 H 1.08997 * 109.47453 * 174.83271 * 18 17 16 49 49 H 1.09004 * 109.47000 * 294.83294 * 18 17 16 50 50 H 1.08999 * 109.47308 * 300.00200 * 21 19 17 51 51 H 1.09008 * 109.46987 * 60.00367 * 21 19 17 52 52 H 1.09002 * 109.47565 * 180.02562 * 21 19 17 53 53 H 0.97007 * 120.00068 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 5.3507 3.0592 -0.0001 7 7 5.7288 4.4696 -0.1183 8 6 5.8296 5.3847 0.8927 9 6 5.5707 5.1317 2.3556 10 6 6.8689 4.6904 3.0343 11 1 7.2779 3.8270 2.5097 12 6 6.5812 4.3140 4.4892 13 8 7.8138 5.7618 2.9975 14 7 6.1921 6.5157 0.3569 15 7 6.3266 6.3784 -0.9139 16 6 6.0601 5.1408 -1.2591 17 7 6.1034 4.6157 -2.5409 18 6 4.7588 4.5509 -3.1289 19 6 7.0151 5.3877 -3.3956 20 1 6.6722 6.4209 -3.4526 21 6 8.4249 5.3503 -2.8023 22 6 7.0364 4.7880 -4.7781 23 1 6.4332 3.9199 -4.9994 24 6 7.8257 5.3475 -5.7602 25 7 8.5599 6.4050 -5.4908 26 14 7.8515 4.6046 -7.4739 27 1 6.9443 3.4298 -7.5177 28 1 7.3976 5.6183 -8.4597 29 1 9.2335 4.1749 -7.8065 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8341 0.9764 -0.8892 36 1 3.8334 0.9767 0.8908 37 1 3.4231 3.4215 -0.8906 38 1 3.4222 3.4225 0.8894 39 1 5.7473 2.6534 0.9305 40 1 5.7592 2.5017 -0.8429 41 1 5.2086 6.0469 2.8240 42 1 4.8206 4.3479 2.4615 43 1 5.8605 3.4968 4.5173 44 1 7.5060 3.9991 4.9727 45 1 6.1722 5.1774 5.0139 46 1 7.5157 6.5647 3.4464 47 1 4.2982 5.5381 -3.0922 48 1 4.8311 4.2219 -4.1656 49 1 4.1494 3.8444 -2.5652 50 1 8.4099 5.7838 -1.8024 51 1 8.7678 4.3171 -2.7453 52 1 9.1013 5.9235 -3.4363 53 1 9.1150 6.7989 -6.1819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122663032.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:56 Heat of formation + Delta-G solvation = -40.171019 kcal Electronic energy + Delta-G solvation = -31401.285433 eV Core-core repulsion = 27308.873979 eV Total energy + Delta-G solvation = -4092.411454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.93304 -39.15723 -39.03940 -38.48230 -36.84898 -34.92217 -33.59663 -33.14724 -31.46810 -31.29422 -30.95412 -28.39477 -27.12586 -26.84806 -26.00799 -23.67045 -23.64572 -23.30143 -22.64261 -21.49209 -21.11277 -18.62305 -18.12578 -17.68357 -17.38871 -17.19958 -17.13953 -17.02487 -16.56849 -16.20560 -15.86384 -15.65319 -15.32049 -15.12499 -14.89337 -14.75337 -14.29076 -13.98751 -13.90389 -13.70966 -13.34600 -13.13351 -13.09364 -13.03011 -12.82225 -12.75116 -12.70580 -12.64781 -12.55531 -12.32182 -12.21148 -12.16333 -12.07082 -11.92819 -11.83093 -11.80282 -11.41390 -11.17999 -11.05744 -10.97122 -10.59047 -10.53148 -10.19326 -9.19214 -8.13549 -6.29052 0.84469 1.32048 1.44662 1.45473 1.57884 1.94158 2.40901 2.65854 3.03455 3.18245 3.33533 3.52251 3.63449 3.84058 3.93556 3.96574 4.08235 4.10194 4.18469 4.22989 4.29653 4.32939 4.35296 4.43063 4.46294 4.51208 4.54039 4.58218 4.74026 4.74658 4.80024 4.84284 4.86773 4.91748 4.94532 5.00202 5.02938 5.06649 5.13792 5.19523 5.21200 5.29022 5.35207 5.42235 5.58525 5.64520 5.92075 6.00726 6.15272 6.28309 6.61440 6.81696 6.91504 7.39950 7.90006 8.93891 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007383 B = 0.003876 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3791.384384 B = 7222.077486 C =10462.352017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.414 6.414 4 C 0.070 3.930 5 C -0.126 4.126 6 C 0.109 3.891 7 N -0.471 5.471 8 C 0.184 3.816 9 C -0.055 4.055 10 C 0.107 3.893 11 H 0.083 0.917 12 C -0.172 4.172 13 O -0.583 6.583 14 N -0.324 5.324 15 N -0.368 5.368 16 C 0.364 3.636 17 N -0.459 5.459 18 C 0.044 3.956 19 C 0.241 3.759 20 H -0.024 1.024 21 C -0.113 4.113 22 C -0.525 4.525 23 H 0.076 0.924 24 C 0.011 3.989 25 N -0.921 5.921 26 Si 0.972 3.028 27 H -0.257 1.257 28 H -0.283 1.283 29 H -0.281 1.281 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.387 0.613 47 H 0.009 0.991 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.010 0.990 51 H 0.029 0.971 52 H 0.064 0.936 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.508 -15.548 19.894 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.334 6.334 4 C -0.007 4.007 5 C -0.164 4.164 6 C -0.013 4.013 7 N -0.166 5.166 8 C -0.085 4.085 9 C -0.095 4.095 10 C 0.047 3.953 11 H 0.101 0.899 12 C -0.230 4.230 13 O -0.391 6.391 14 N -0.163 5.163 15 N -0.212 5.212 16 C 0.006 3.994 17 N -0.184 5.184 18 C -0.103 4.103 19 C 0.135 3.865 20 H -0.007 1.007 21 C -0.172 4.172 22 C -0.563 4.563 23 H 0.094 0.906 24 C -0.189 4.189 25 N -0.560 5.560 26 Si 0.796 3.204 27 H -0.181 1.181 28 H -0.209 1.209 29 H -0.207 1.207 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.131 0.869 42 H 0.141 0.859 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.237 0.763 47 H 0.028 0.972 48 H 0.111 0.889 49 H 0.101 0.899 50 H 0.029 0.971 51 H 0.048 0.952 52 H 0.083 0.917 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.609 -14.737 19.359 27.403 hybrid contribution -0.266 -0.013 -1.053 1.086 sum -12.875 -14.750 18.306 26.804 Atomic orbital electron populations 1.21779 0.93335 1.03297 1.02511 1.22652 0.96050 0.82691 1.01120 1.87850 1.21596 1.28249 1.95685 1.22322 0.81224 0.94997 1.02116 1.21790 0.93285 0.97535 1.03774 1.21979 0.96006 0.76751 1.06545 1.46360 1.52599 1.12238 1.05380 1.25286 1.03107 0.85774 0.94341 1.21075 1.00369 1.05857 0.82184 1.21934 0.87123 0.89596 0.96643 0.89925 1.22402 1.03137 1.03644 0.93780 1.86640 1.45407 1.25983 1.81062 1.73817 1.18441 1.22962 1.01036 1.74656 1.24496 1.15170 1.06846 1.22852 1.00028 0.87378 0.89134 1.59067 1.11436 1.50973 0.96954 1.22409 0.86333 0.99507 1.02021 1.18926 0.87802 0.89751 0.89982 1.00662 1.21563 0.99718 0.98797 0.97086 1.21390 1.26877 1.14155 0.93904 0.90619 1.25834 0.94666 0.95174 1.03179 1.70098 1.28265 1.22770 1.34825 0.85302 0.78034 0.78512 0.78536 1.18115 1.20866 1.20725 0.92893 0.89183 0.92145 0.92891 0.91744 0.92514 0.90239 0.92589 0.89636 0.85460 0.88290 0.86919 0.85863 0.89293 0.91859 0.90688 0.76317 0.97193 0.88919 0.89855 0.97123 0.95221 0.91740 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.65 6.66 71.98 0.48 1.13 16 3 O -0.41 -7.56 10.34 -148.98 -1.54 -9.10 16 4 C 0.07 1.02 5.94 71.98 0.43 1.44 16 5 C -0.13 -2.28 5.90 30.60 0.18 -2.10 16 6 C 0.11 2.27 5.85 86.38 0.51 2.78 16 7 N -0.47 -15.12 2.81 -514.85 -1.45 -16.56 16 8 C 0.18 5.78 7.09 137.64 0.98 6.76 16 9 C -0.06 -0.98 5.21 29.84 0.16 -0.82 16 10 C 0.11 1.85 3.57 30.59 0.11 1.96 16 11 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 12 C -0.17 -1.62 9.53 71.98 0.69 -0.94 16 13 O -0.58 -14.36 13.09 -148.98 -1.95 -16.31 16 14 N -0.32 -13.84 12.18 -49.54 -0.60 -14.44 16 15 N -0.37 -18.32 10.28 -58.01 -0.60 -18.92 16 16 C 0.36 15.82 5.91 260.11 1.54 17.35 16 17 N -0.46 -20.81 4.61 -711.00 -3.28 -24.09 16 18 C 0.04 1.74 9.36 127.69 1.19 2.94 16 19 C 0.24 13.25 1.74 44.17 0.08 13.32 16 20 H -0.02 -1.56 7.89 -2.38 -0.02 -1.57 16 21 C -0.11 -6.34 8.81 71.98 0.63 -5.71 16 22 C -0.53 -28.93 7.81 25.60 0.20 -28.73 16 23 H 0.08 3.93 6.45 -2.91 -0.02 3.91 16 24 C 0.01 0.60 5.30 84.65 0.45 1.05 16 25 N -0.92 -55.20 11.32 21.44 0.24 -54.96 16 26 Si 0.97 43.43 29.54 68.60 2.03 45.45 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 28 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 1.34 6.16 -2.39 -0.01 1.32 16 38 H 0.09 1.39 7.76 -2.39 -0.02 1.38 16 39 H 0.13 1.68 8.07 -2.39 -0.02 1.66 16 40 H 0.10 2.28 8.09 -2.39 -0.02 2.26 16 41 H 0.11 1.75 8.14 -2.38 -0.02 1.74 16 42 H 0.12 1.31 7.59 -2.38 -0.02 1.29 16 43 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.39 6.82 9.05 -74.06 -0.67 6.15 16 47 H 0.01 0.40 8.11 -2.39 -0.02 0.38 16 48 H 0.09 3.72 5.96 -2.39 -0.01 3.71 16 49 H 0.08 2.65 6.15 -2.39 -0.01 2.63 16 50 H 0.01 0.56 6.40 -2.39 -0.02 0.55 16 51 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 52 H 0.06 3.91 6.07 -2.39 -0.01 3.89 16 53 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -81.59 422.37 1.43 -80.17 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.22 Total: 19.31 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 8.35 Total: 9.45 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -5.68 Total: -128.97 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -3.49 Total: -25.41 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -81.59 1.43 -80.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122663032.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.998 kcal (2) G-P(sol) polarization free energy of solvation -81.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds