Wall clock time and date at job start Sat Apr 11 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.45835 * 2 1 4 4 C 1.53036 * 109.45437 * 240.02400 * 2 1 3 5 5 C 1.53124 * 109.27753 * 180.80797 * 4 2 1 6 6 C 1.53124 * 109.16086 * 57.65319 * 5 4 2 7 7 H 1.08999 * 109.49619 * 62.28601 * 6 5 4 8 8 N 1.46495 * 109.50361 * 182.36283 * 6 5 4 9 9 C 1.34775 * 120.00185 * 275.00500 * 8 6 5 10 10 O 1.21276 * 120.00106 * 359.97438 * 9 8 6 11 11 C 1.50699 * 120.00098 * 180.02562 * 9 8 6 12 12 C 1.52995 * 109.47479 * 180.02562 * 11 9 8 13 13 N 1.46899 * 109.47393 * 179.97438 * 12 11 9 14 14 C 1.46900 * 110.99929 * 169.99666 * 13 12 11 15 15 C 1.46897 * 110.99836 * 293.95064 * 13 12 11 16 16 C 1.53035 * 109.27675 * 302.34745 * 6 5 4 17 17 N 1.46846 * 109.46340 * 119.97311 * 2 1 3 18 18 C 1.46901 * 111.00341 * 305.84602 * 17 2 1 19 19 C 1.50702 * 109.47227 * 163.93039 * 18 17 2 20 20 O 1.21296 * 119.99778 * 0.02562 * 19 18 17 21 21 N 1.34771 * 119.99921 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00033 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00244 * 359.97438 * 22 21 19 24 24 C 1.38959 * 119.99980 * 179.72200 * 22 21 19 25 25 N 1.31409 * 120.00186 * 0.27515 * 24 22 21 26 26 Si 1.86807 * 119.99692 * 180.27511 * 24 22 21 27 27 H 1.48498 * 109.47092 * 60.00002 * 26 24 22 28 28 H 1.48502 * 109.46699 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47162 * 299.99786 * 26 24 22 30 30 H 1.09007 * 109.47553 * 307.47136 * 1 2 3 31 31 H 1.08996 * 109.47254 * 67.47329 * 1 2 3 32 32 H 1.09001 * 109.46960 * 187.47756 * 1 2 3 33 33 H 1.08997 * 109.50202 * 300.75083 * 4 2 1 34 34 H 1.09001 * 109.50108 * 60.83386 * 4 2 1 35 35 H 1.08994 * 109.52330 * 177.55848 * 5 4 2 36 36 H 1.09002 * 109.52046 * 297.75294 * 5 4 2 37 37 H 0.97005 * 119.99570 * 94.99927 * 8 6 5 38 38 H 1.09005 * 109.47000 * 299.99894 * 11 9 8 39 39 H 1.09000 * 109.47459 * 59.99499 * 11 9 8 40 40 H 1.09005 * 109.46854 * 299.99905 * 12 11 9 41 41 H 1.09000 * 109.47248 * 59.99291 * 12 11 9 42 42 H 1.09001 * 109.47426 * 59.99791 * 14 13 12 43 43 H 1.09001 * 109.47112 * 180.02562 * 14 13 12 44 44 H 1.09007 * 109.47396 * 300.00028 * 14 13 12 45 45 H 1.08993 * 109.47122 * 60.00382 * 15 13 12 46 46 H 1.09005 * 109.46974 * 180.02562 * 15 13 12 47 47 H 1.08994 * 109.47006 * 299.99529 * 15 13 12 48 48 H 1.09003 * 109.46354 * 299.15865 * 16 6 5 49 49 H 1.09005 * 109.45848 * 179.19635 * 16 6 5 50 50 H 1.09001 * 109.46971 * 43.93128 * 18 17 2 51 51 H 1.09000 * 109.47206 * 283.93401 * 18 17 2 52 52 H 0.97006 * 120.00460 * 359.97438 * 21 19 18 53 53 H 0.96997 * 119.99822 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0396 -0.7210 -1.2500 5 6 3.5707 -0.7363 -1.2357 6 6 4.0546 -1.4190 0.0466 7 1 3.7121 -2.4538 0.0593 8 7 5.5184 -1.3877 0.0950 9 6 6.2340 -2.3436 -0.5300 10 8 5.6661 -3.2301 -1.1320 11 6 7.7398 -2.3117 -0.4797 12 6 8.3016 -3.4996 -1.2633 13 7 9.7695 -3.4680 -1.2148 14 6 10.3407 -4.7116 -1.7489 15 6 10.2948 -2.2976 -1.9303 16 6 3.4864 -0.6778 1.2589 17 7 2.0192 -0.6917 1.1994 18 6 1.4375 -0.1104 2.4166 19 6 1.6328 -1.0605 3.5700 20 8 2.2013 -2.1177 3.3952 21 7 1.1760 -0.7356 4.7955 22 6 1.3541 -1.5997 5.8449 23 1 1.8603 -2.5410 5.6894 24 6 0.8882 -1.2620 7.1097 25 7 0.2720 -0.1169 7.2989 26 14 1.1378 -2.4361 8.5411 27 1 2.5906 -2.6676 8.7439 28 1 0.5544 -1.8461 9.7727 29 1 0.4674 -3.7275 8.2448 30 1 -0.3634 0.6252 0.8156 31 1 -0.3633 0.3937 -0.9492 32 1 -0.3633 -1.0189 0.1337 33 1 1.6655 -1.7447 -1.2576 34 1 1.6887 -0.1985 -2.1399 35 1 3.9376 -1.2866 -2.1021 36 1 3.9455 0.2868 -1.2673 37 1 5.9727 -0.6788 0.5768 38 1 8.0985 -1.3825 -0.9225 39 1 8.0701 -2.3711 0.5573 40 1 7.9430 -4.4290 -0.8209 41 1 7.9713 -3.4397 -2.3003 42 1 10.0279 -4.8395 -2.7852 43 1 11.4285 -4.6618 -1.7008 44 1 9.9895 -5.5566 -1.1565 45 1 9.9103 -1.3876 -1.4699 46 1 11.3836 -2.2990 -1.8792 47 1 9.9804 -2.3380 -2.9732 48 1 3.8404 0.3531 1.2530 49 1 3.8175 -1.1701 2.1734 50 1 0.3720 0.0613 2.2638 51 1 1.9299 0.8364 2.6383 52 1 0.7217 0.1101 4.9354 53 1 -0.0536 0.1185 8.1818 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132274626.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:17 Heat of formation + Delta-G solvation = -93.081898 kcal Electronic energy + Delta-G solvation = -30352.277081 eV Core-core repulsion = 26257.571240 eV Total energy + Delta-G solvation = -4094.705842 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34609 -40.47126 -39.30029 -38.28963 -36.18032 -35.87197 -33.88741 -33.21446 -32.91819 -31.66176 -29.13395 -28.48332 -27.71707 -26.45241 -25.76339 -24.23663 -22.83140 -21.99773 -21.35326 -21.01561 -20.59369 -19.82956 -18.34655 -17.77933 -17.46315 -16.96662 -16.61590 -16.45668 -16.20628 -15.88033 -15.86744 -15.65159 -15.58947 -15.44845 -15.04375 -14.77234 -14.63308 -14.26492 -14.02391 -13.82988 -13.53409 -13.37742 -13.29745 -13.20672 -12.97568 -12.79229 -12.77611 -12.63058 -12.58988 -12.43001 -12.42181 -12.12834 -12.03410 -11.92943 -11.87938 -11.78773 -11.43951 -11.35678 -10.87257 -10.30104 -10.07259 -9.97384 -9.38082 -9.16576 -8.44758 -5.92823 1.39589 1.41259 1.51822 1.61542 2.00630 2.09513 2.29622 2.78287 3.05910 3.22023 3.44635 3.67129 3.80643 3.83237 3.93274 3.97131 4.06315 4.12028 4.26264 4.28727 4.33602 4.42569 4.46974 4.47993 4.51901 4.55168 4.61976 4.63921 4.65232 4.69595 4.85931 4.86424 4.92015 4.94122 4.98979 4.99414 5.03861 5.06557 5.09714 5.19729 5.29889 5.41379 5.42228 5.49026 5.91847 5.96921 6.05484 6.10756 6.28165 6.53864 6.63804 7.15792 7.24772 7.59938 8.16811 8.72329 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.002469 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.456189 B =11338.014562 C =13608.230142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 H 0.059 0.941 4 C -0.104 4.104 5 C -0.117 4.117 6 C 0.157 3.843 7 H 0.052 0.948 8 N -0.714 5.714 9 C 0.513 3.487 10 O -0.587 6.587 11 C -0.125 4.125 12 C 0.074 3.926 13 N -0.558 5.558 14 C 0.023 3.977 15 C 0.017 3.983 16 C 0.062 3.938 17 N -0.531 5.531 18 C 0.056 3.944 19 C 0.441 3.559 20 O -0.616 6.616 21 N -0.575 5.575 22 C -0.330 4.330 23 H 0.075 0.925 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.274 1.274 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.025 0.975 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.115 0.885 51 H 0.071 0.929 52 H 0.396 0.604 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.624 5.888 -19.473 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 H 0.077 0.923 4 C -0.142 4.142 5 C -0.156 4.156 6 C 0.052 3.948 7 H 0.070 0.930 8 N -0.366 5.366 9 C 0.300 3.700 10 O -0.467 6.467 11 C -0.165 4.165 12 C -0.054 4.054 13 N -0.282 5.282 14 C -0.125 4.125 15 C -0.131 4.131 16 C -0.066 4.066 17 N -0.257 5.257 18 C -0.075 4.075 19 C 0.228 3.772 20 O -0.502 6.502 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.093 0.907 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.200 1.200 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.251 0.749 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.133 0.867 51 H 0.089 0.911 52 H 0.230 0.770 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.510 4.202 -19.382 23.997 hybrid contribution -0.185 0.489 0.595 0.792 sum 13.325 4.691 -18.788 23.506 Atomic orbital electron populations 1.21952 0.93477 1.02090 1.03101 1.21810 0.96246 0.95798 0.88940 0.92281 1.21583 0.94292 1.01064 0.97278 1.21877 0.96394 1.01085 0.96245 1.20684 0.79487 0.99628 0.95030 0.92968 1.45911 1.06491 1.29611 1.54597 1.21194 0.91061 0.80321 0.77404 1.90691 1.73838 1.37357 1.44852 1.21596 0.88582 1.01634 1.04721 1.21703 0.87179 0.98198 0.98332 1.61991 1.05743 1.04276 1.56195 1.22423 1.00955 0.91473 0.97670 1.22552 1.01347 0.93312 0.95914 1.22123 0.87827 0.98815 0.97876 1.61279 1.06653 1.56328 1.01470 1.21805 1.02709 0.94608 0.88360 1.20875 0.82971 0.88919 0.84410 1.90499 1.47550 1.27663 1.84449 1.41920 1.52236 1.19990 1.07182 1.19564 1.36851 1.01395 0.88179 0.90655 1.25980 0.96090 0.98551 1.00596 1.69657 1.38728 1.22668 1.25019 0.85045 0.78632 0.77930 0.77071 1.19770 1.19386 1.19990 0.91999 0.89504 0.93366 0.92892 0.88298 0.92324 0.89868 0.74905 0.86060 0.86827 0.91926 0.95103 0.95613 0.89757 0.91636 0.90072 0.90154 0.95652 0.92729 0.92422 0.86678 0.91117 0.77038 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.57 71.98 0.62 -2.51 16 2 C 0.08 1.83 2.44 44.94 0.11 1.94 16 3 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 4 C -0.10 -2.24 5.37 30.65 0.16 -2.08 16 5 C -0.12 -2.62 5.58 30.68 0.17 -2.45 16 6 C 0.16 4.45 2.61 45.05 0.12 4.56 16 7 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 8 N -0.71 -16.35 5.08 -442.30 -2.25 -18.60 16 9 C 0.51 12.95 7.79 87.66 0.68 13.64 16 10 O -0.59 -20.35 15.65 -3.02 -0.05 -20.40 16 11 C -0.13 -2.15 5.62 29.85 0.17 -1.98 16 12 C 0.07 1.49 4.25 86.30 0.37 1.85 16 13 N -0.56 -9.26 5.02 -948.86 -4.76 -14.02 16 14 C 0.02 0.33 9.57 127.69 1.22 1.55 16 15 C 0.02 0.20 9.32 127.69 1.19 1.39 16 16 C 0.06 1.89 4.58 86.33 0.40 2.29 16 17 N -0.53 -16.94 4.12 -875.65 -3.61 -20.54 16 18 C 0.06 1.91 5.26 85.56 0.45 2.36 16 19 C 0.44 21.05 7.47 87.66 0.65 21.70 16 20 O -0.62 -34.59 14.42 -3.08 -0.04 -34.63 16 21 N -0.58 -29.55 5.29 -306.98 -1.62 -31.17 16 22 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -49.59 13.05 21.67 0.28 -49.30 16 26 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 30 H 0.06 1.25 6.44 -2.38 -0.02 1.24 16 31 H 0.09 1.34 8.13 -2.39 -0.02 1.32 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.41 6.76 8.60 -92.70 -0.80 5.96 16 38 H 0.12 1.37 6.55 -2.38 -0.02 1.36 16 39 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.50 8.02 -2.38 -0.02 1.48 16 41 H 0.03 0.68 8.08 -2.39 -0.02 0.66 16 42 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 44 H 0.06 0.99 8.12 -2.38 -0.02 0.98 16 45 H 0.08 0.78 6.47 -2.39 -0.02 0.76 16 46 H 0.08 0.77 8.12 -2.38 -0.02 0.75 16 47 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.06 2.25 6.35 -2.38 -0.02 2.24 16 50 H 0.12 3.49 5.55 -2.39 -0.01 3.48 16 51 H 0.07 2.09 8.05 -2.39 -0.02 2.08 16 52 H 0.40 19.19 7.90 -92.70 -0.73 18.46 16 53 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -75.65 416.10 -3.05 -78.71 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.62 Total: 40.54 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 7.59 Total: 23.99 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -11.96 Total: -133.64 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -0.09 Total: -55.03 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -75.65 -3.05 -78.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132274626.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.373 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds