Wall clock time and date at job start Sat Apr 11 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47093 * 2 1 4 4 C 1.34778 * 119.99829 * 179.97438 * 3 2 1 5 5 O 1.21587 * 119.99827 * 0.02562 * 4 3 2 6 6 N 1.34769 * 119.99773 * 180.02562 * 4 3 2 7 7 C 1.46503 * 120.00193 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47097 * 59.99836 * 7 6 4 9 9 C 1.53003 * 109.46757 * 300.00248 * 7 6 4 10 10 C 1.50697 * 109.47492 * 180.02562 * 7 6 4 11 11 O 1.21279 * 120.00270 * 145.00025 * 10 7 6 12 12 N 1.34776 * 119.99614 * 324.99362 * 10 7 6 13 13 C 1.46506 * 119.99603 * 180.02562 * 12 10 7 14 14 H 1.08995 * 109.49832 * 35.06799 * 13 12 10 15 15 C 1.53035 * 109.49451 * 155.16915 * 13 12 10 16 16 C 1.53047 * 109.53566 * 181.31855 * 15 13 12 17 17 C 1.53195 * 109.30819 * 298.63039 * 16 15 13 18 18 H 1.08996 * 109.58674 * 294.84338 * 17 16 15 19 19 C 1.53002 * 109.58268 * 174.42602 * 17 16 15 20 20 N 1.46921 * 108.77733 * 54.63805 * 17 16 15 21 21 C 1.36942 * 120.63255 * 126.36147 * 20 17 16 22 22 H 1.07997 * 120.00046 * 330.19430 * 21 20 17 23 23 C 1.38811 * 119.99604 * 150.18437 * 21 20 17 24 24 N 1.31623 * 120.00316 * 344.50193 * 23 21 20 25 25 Si 1.86802 * 119.99696 * 164.50391 * 23 21 20 26 26 H 1.48499 * 109.47170 * 60.00304 * 25 23 21 27 27 H 1.48498 * 109.47163 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47108 * 300.00193 * 25 23 21 29 29 C 1.46928 * 118.74012 * 306.39068 * 20 17 16 30 30 H 1.09006 * 109.46985 * 59.99467 * 1 2 3 31 31 H 1.08994 * 109.47046 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46982 * 300.00254 * 1 2 3 33 33 H 1.08997 * 109.46982 * 239.99746 * 2 1 3 34 34 H 1.08999 * 109.46848 * 119.99678 * 2 1 3 35 35 H 0.96996 * 119.99669 * 0.02562 * 3 2 1 36 36 H 0.97005 * 120.00325 * 0.02562 * 6 4 3 37 37 H 1.09000 * 109.47255 * 59.99943 * 8 7 6 38 38 H 1.09009 * 109.46946 * 300.00480 * 8 7 6 39 39 H 1.08998 * 109.47172 * 180.02562 * 8 7 6 40 40 H 1.09002 * 109.46810 * 180.02562 * 9 7 6 41 41 H 1.08998 * 109.46935 * 299.99557 * 9 7 6 42 42 H 1.09000 * 109.47589 * 59.99638 * 9 7 6 43 43 H 0.96992 * 120.00413 * 0.02562 * 12 10 7 44 44 H 1.08997 * 109.46263 * 301.33050 * 15 13 12 45 45 H 1.08996 * 109.46369 * 61.29728 * 15 13 12 46 46 H 1.09001 * 109.49469 * 178.68300 * 16 15 13 47 47 H 1.08992 * 109.49940 * 58.58444 * 16 15 13 48 48 H 1.09001 * 109.46838 * 300.70699 * 19 17 16 49 49 H 1.09000 * 109.47724 * 60.70798 * 19 17 16 50 50 H 1.08996 * 109.46994 * 180.71607 * 19 17 16 51 51 H 0.97002 * 119.99550 * 179.97438 * 24 23 21 52 52 H 1.08999 * 109.58096 * 293.82440 * 29 20 17 53 53 H 1.08998 * 109.70728 * 173.46638 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1335 0.7033 0.0005 6 7 3.7927 2.8981 0.0010 7 6 5.2330 3.1659 0.0010 8 6 5.8662 2.5505 -1.2485 9 6 5.8663 2.5494 1.2500 10 6 5.4673 4.6545 0.0023 11 8 6.4115 5.1193 0.6050 12 7 4.6275 5.4694 -0.6664 13 6 4.8556 6.9166 -0.6657 14 1 5.9271 7.1160 -0.6671 15 6 4.2185 7.5346 -1.9123 16 6 4.4844 9.0417 -1.9293 17 6 3.8470 9.6825 -0.6923 18 1 2.7630 9.5824 -0.7465 19 6 4.2256 11.1636 -0.6294 20 7 4.3460 8.9952 0.5065 21 6 4.9159 9.7036 1.5306 22 1 5.4374 10.6265 1.3240 23 6 4.8230 9.2355 2.8341 24 7 3.9493 8.2987 3.1363 25 14 5.9382 9.9352 4.1593 26 1 5.7016 11.3959 4.2850 27 1 5.6435 9.2723 5.4551 28 1 7.3565 9.6934 3.7914 29 6 4.2224 7.5333 0.5856 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.3880 2.1185 0.0004 36 1 3.1623 3.6355 0.0014 37 1 5.4150 2.9896 -2.1383 38 1 5.6967 1.4737 -1.2490 39 1 6.9379 2.7493 -1.2483 40 1 6.9379 2.7490 1.2502 41 1 5.4152 2.9878 2.1402 42 1 5.6969 1.4726 1.2496 43 1 3.8721 5.0977 -1.1482 44 1 4.6498 7.0799 -2.8040 45 1 3.1434 7.3558 -1.8975 46 1 4.0506 9.4776 -2.8292 47 1 5.5594 9.2216 -1.9192 48 1 5.3103 11.2596 -0.5817 49 1 3.8547 11.6717 -1.5195 50 1 3.7817 11.6147 0.2580 51 1 3.8848 7.9714 4.0472 52 1 3.1690 7.2579 0.6357 53 1 4.7381 7.1683 1.4738 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132334898.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:44 Heat of formation + Delta-G solvation = -73.778986 kcal Electronic energy + Delta-G solvation = -31837.584694 eV Core-core repulsion = 27743.715890 eV Total energy + Delta-G solvation = -4093.868804 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93721 -40.65172 -39.33993 -37.11991 -36.13207 -35.87343 -34.64455 -32.97610 -32.17152 -31.70033 -30.48104 -28.34733 -27.80794 -26.90929 -24.98131 -24.00492 -23.58526 -22.17953 -22.00540 -21.14712 -20.51422 -19.79859 -18.44535 -18.31603 -17.35726 -16.90327 -16.70409 -16.63467 -16.12010 -15.75243 -15.57508 -15.35487 -15.21097 -15.13877 -14.99554 -14.90146 -14.51847 -14.11434 -14.02981 -13.55777 -13.36932 -13.32985 -13.06907 -13.04545 -12.94924 -12.76174 -12.70133 -12.62457 -12.56489 -12.48604 -12.29088 -12.22815 -12.13567 -11.98605 -11.66138 -11.45789 -11.26992 -11.12825 -10.67540 -10.52603 -10.41396 -10.13919 -9.86261 -8.60155 -7.85471 -5.30705 1.28894 1.40645 1.46206 1.49670 1.78954 2.00013 2.14125 2.50481 3.20346 3.30734 3.45592 3.72024 3.87925 3.91262 4.02204 4.10938 4.17687 4.26596 4.30160 4.40355 4.56963 4.59508 4.62637 4.66971 4.72502 4.73905 4.79572 4.81637 4.89707 4.97581 5.02147 5.08458 5.11151 5.12207 5.19696 5.21171 5.29077 5.29952 5.32652 5.34322 5.44767 5.55827 5.58302 5.62488 5.71505 5.80422 5.90229 6.40544 6.50316 7.01266 7.15152 7.20382 7.55402 7.91445 8.39926 9.19201 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.003150 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.175280 B = 8885.718878 C = 9371.843742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 N -0.735 5.735 4 C 0.707 3.293 5 O -0.615 6.615 6 N -0.732 5.732 7 C 0.191 3.809 8 C -0.149 4.149 9 C -0.145 4.145 10 C 0.514 3.486 11 O -0.568 6.568 12 N -0.700 5.700 13 C 0.130 3.870 14 H 0.051 0.949 15 C -0.107 4.107 16 C -0.119 4.119 17 C 0.154 3.846 18 H 0.025 0.975 19 C -0.130 4.130 20 N -0.602 5.602 21 C -0.251 4.251 22 H 0.072 0.928 23 C -0.049 4.049 24 N -0.930 5.930 25 Si 0.952 3.048 26 H -0.269 1.269 27 H -0.297 1.297 28 H -0.287 1.287 29 C 0.181 3.819 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.410 0.590 36 H 0.406 0.594 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.040 0.960 42 H 0.086 0.914 43 H 0.411 0.589 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.050 0.950 48 H 0.044 0.956 49 H 0.078 0.922 50 H 0.037 0.963 51 H 0.244 0.756 52 H 0.003 0.997 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.046 -12.614 -14.252 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.008 3.992 3 N -0.392 5.392 4 C 0.407 3.593 5 O -0.496 6.496 6 N -0.391 5.391 7 C 0.100 3.900 8 C -0.207 4.207 9 C -0.204 4.204 10 C 0.299 3.701 11 O -0.445 6.445 12 N -0.352 5.352 13 C 0.024 3.976 14 H 0.070 0.930 15 C -0.145 4.145 16 C -0.158 4.158 17 C 0.049 3.951 18 H 0.042 0.958 19 C -0.188 4.188 20 N -0.326 5.326 21 C -0.382 4.382 22 H 0.089 0.911 23 C -0.245 4.245 24 N -0.576 5.576 25 Si 0.781 3.219 26 H -0.194 1.194 27 H -0.224 1.224 28 H -0.214 1.214 29 C 0.054 3.946 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.246 0.754 36 H 0.242 0.758 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.248 0.752 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.056 0.944 51 H 0.053 0.947 52 H 0.021 0.979 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.713 -13.151 -13.677 20.126 hybrid contribution -0.174 0.855 1.424 1.670 sum -6.888 -12.296 -12.252 18.675 Atomic orbital electron populations 1.21964 0.92116 1.04160 1.03156 1.21241 0.95632 0.80887 1.01478 1.45184 1.04410 1.10266 1.79354 1.15976 0.83340 0.82653 0.77354 1.90843 1.55573 1.44115 1.59037 1.45125 1.06465 1.06959 1.80530 1.20202 0.81275 0.89473 0.99009 1.22118 1.00892 1.03147 0.94519 1.22000 1.01040 1.02188 0.95124 1.20822 0.82513 0.88761 0.78030 1.90761 1.32440 1.77193 1.44085 1.45925 1.29994 1.06924 1.52386 1.21592 0.99628 0.78516 0.97913 0.93041 1.21653 1.01231 0.96050 0.95591 1.21958 1.00745 0.94679 0.98420 1.20803 0.95129 0.92502 0.86675 0.95772 1.21739 1.00751 0.95256 1.01035 1.44287 1.69712 1.01446 1.17204 1.19398 1.26287 1.06539 0.85937 0.91057 1.25729 0.99256 1.00268 0.99220 1.70129 1.35979 1.33260 1.18230 0.85569 0.79133 0.78396 0.78799 1.19441 1.22365 1.21417 1.20744 0.95531 0.83420 0.94897 0.91012 0.89566 0.91729 0.92077 0.92966 0.75409 0.75774 0.90520 0.89506 0.91262 0.91421 0.94067 0.89566 0.75190 0.89647 0.90442 0.88624 0.93107 0.93694 0.90326 0.94400 0.94704 0.97856 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.03 71.98 0.72 -0.54 16 2 C 0.13 1.88 6.39 86.38 0.55 2.44 16 3 N -0.74 -11.97 5.56 -478.53 -2.66 -14.63 16 4 C 0.71 16.52 7.98 179.06 1.43 17.95 16 5 O -0.62 -18.36 12.55 -3.99 -0.05 -18.41 16 6 N -0.73 -16.40 4.86 -441.44 -2.15 -18.55 16 7 C 0.19 5.29 0.98 2.86 0.00 5.29 16 8 C -0.15 -3.54 8.38 71.98 0.60 -2.93 16 9 C -0.14 -4.55 7.93 71.98 0.57 -3.98 16 10 C 0.51 17.55 6.62 87.66 0.58 18.13 16 11 O -0.57 -25.69 15.76 -3.03 -0.05 -25.74 16 12 N -0.70 -20.51 4.78 -442.16 -2.11 -22.62 16 13 C 0.13 4.70 2.60 45.07 0.12 4.82 16 14 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 15 C -0.11 -2.88 5.35 30.62 0.16 -2.72 16 16 C -0.12 -3.46 5.37 30.68 0.16 -3.30 16 17 C 0.15 5.84 3.50 44.98 0.16 6.00 16 18 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 19 C -0.13 -4.55 7.95 71.98 0.57 -3.98 16 20 N -0.60 -29.45 2.99 -675.22 -2.02 -31.47 16 21 C -0.25 -13.83 8.57 84.03 0.72 -13.11 16 22 H 0.07 3.81 6.24 -2.91 -0.02 3.79 16 23 C -0.05 -2.84 4.94 84.86 0.42 -2.42 16 24 N -0.93 -56.41 11.23 21.65 0.24 -56.16 16 25 Si 0.95 47.21 29.58 68.60 2.03 49.24 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 28 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 29 C 0.18 8.60 4.86 86.36 0.42 9.02 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.41 4.57 8.49 -92.71 -0.79 3.78 16 36 H 0.41 7.65 7.25 -92.70 -0.67 6.97 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 2.21 6.17 -2.38 -0.01 2.20 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.18 7.87 -2.39 -0.02 2.16 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 2.67 6.16 -2.39 -0.01 2.65 16 43 H 0.41 8.55 7.35 -92.71 -0.68 7.87 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.04 1.62 7.44 -2.39 -0.02 1.61 16 49 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.04 1.48 7.63 -2.39 -0.02 1.46 16 51 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 52 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 53 H 0.04 2.34 6.15 -2.39 -0.01 2.32 16 Total: -1.00 -77.43 408.83 -0.78 -78.22 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -1.22 Total: 29.44 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 7.19 Total: 30.68 kcal Atomic # 7 Polarization: -134.74 SS G_CDS: -8.69 Total: -143.43 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -0.10 Total: -44.14 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -77.43 -0.78 -78.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132334898.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.437 kcal (2) G-P(sol) polarization free energy of solvation -77.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds