Wall clock time and date at job start Sat Apr 11 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46024 * 2 1 4 4 C 1.53043 * 109.44378 * 119.96532 * 2 1 3 5 5 C 1.53623 * 109.24415 * 58.52440 * 4 2 1 6 6 N 1.46917 * 108.54418 * 54.85543 * 5 4 2 7 7 C 1.34775 * 120.63330 * 126.36691 * 6 5 4 8 8 O 1.21283 * 120.00426 * 179.71537 * 7 6 5 9 9 C 1.50702 * 119.99785 * 359.72404 * 7 6 5 10 10 C 1.53003 * 109.46874 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47017 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47301 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47059 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.27942 * 14 13 12 16 16 O 1.21593 * 119.99949 * 0.28071 * 14 13 12 17 17 C 1.46929 * 118.73661 * 306.09160 * 6 5 4 18 18 C 1.53041 * 109.45974 * 240.02111 * 2 1 3 19 19 H 1.08994 * 109.49400 * 181.40897 * 18 2 1 20 20 C 1.52996 * 109.49352 * 61.31358 * 18 2 1 21 21 N 1.46500 * 109.47231 * 175.15932 * 20 18 2 22 22 C 1.36939 * 120.00483 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99889 * 0.02562 * 22 21 20 24 24 C 1.38809 * 120.00111 * 179.97438 * 22 21 20 25 25 N 1.31623 * 120.00168 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99982 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47341 * 90.00114 * 26 24 22 28 28 H 1.48502 * 109.46927 * 210.00544 * 26 24 22 29 29 H 1.48501 * 109.46883 * 330.00204 * 26 24 22 30 30 H 1.08995 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47128 * 299.97521 * 1 2 3 32 32 H 1.09001 * 109.46839 * 59.97306 * 1 2 3 33 33 H 1.09001 * 109.49554 * 178.59831 * 4 2 1 34 34 H 1.08998 * 109.49726 * 298.69025 * 4 2 1 35 35 H 1.09003 * 109.73922 * 295.11084 * 5 4 2 36 36 H 1.08999 * 109.66368 * 174.54984 * 5 4 2 37 37 H 1.08998 * 109.47129 * 59.99946 * 9 7 6 38 38 H 1.09003 * 109.46980 * 299.99152 * 9 7 6 39 39 H 1.08990 * 109.47421 * 59.99778 * 10 9 7 40 40 H 1.09002 * 109.47073 * 299.99063 * 10 9 7 41 41 H 1.09004 * 109.47038 * 59.99615 * 11 10 9 42 42 H 1.09000 * 109.46939 * 300.00268 * 11 10 9 43 43 H 1.09004 * 109.47066 * 60.00027 * 12 11 10 44 44 H 1.08994 * 109.46974 * 300.00175 * 12 11 10 45 45 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 46 46 H 0.97000 * 119.99549 * 359.97438 * 15 14 13 47 47 H 0.96996 * 119.99887 * 180.02562 * 15 14 13 48 48 H 1.09002 * 109.58545 * 173.64547 * 17 6 5 49 49 H 1.08994 * 109.59063 * 293.93311 * 17 6 5 50 50 H 1.09006 * 109.47494 * 295.16218 * 20 18 2 51 51 H 1.09001 * 109.47121 * 55.16214 * 20 18 2 52 52 H 0.97001 * 119.99551 * 0.02562 * 21 20 18 53 53 H 0.97001 * 119.99910 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0395 -0.7208 1.2502 5 6 1.4939 -2.1568 1.2644 6 7 1.8619 -2.8090 0.0004 7 6 2.5147 -3.9880 0.0005 8 8 2.8084 -4.5188 -1.0497 9 6 2.8797 -4.6471 1.3058 10 6 3.6078 -5.9634 1.0263 11 6 3.9789 -6.6322 2.3515 12 6 4.7064 -7.9488 2.0721 13 7 5.0623 -8.5888 3.3410 14 6 5.7094 -9.7710 3.3411 15 7 6.0319 -10.3626 4.5084 16 8 6.0025 -10.3039 2.2882 17 6 1.4992 -2.1543 -1.2640 18 6 2.0399 -0.7210 -1.2499 19 1 3.1296 -0.7433 -1.2380 20 6 1.5572 0.0191 -2.4989 21 7 2.1396 -0.6026 -3.6907 22 6 1.8480 -0.1071 -4.9335 23 1 1.1889 0.7423 -5.0351 24 6 2.4003 -0.6960 -6.0627 25 7 3.2040 -1.7310 -5.9389 26 14 2.0029 -0.0196 -7.7580 27 1 2.9962 1.0231 -8.1202 28 1 2.0542 -1.1197 -8.7543 29 1 0.6423 0.5753 -7.7471 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 3.1292 -0.7431 1.2386 34 1 1.6955 -0.1933 2.1399 35 1 0.4086 -2.1374 1.3633 36 1 1.9290 -2.7063 2.0992 37 1 1.9735 -4.8477 1.8773 38 1 3.5309 -3.9855 1.8772 39 1 4.5138 -5.7632 0.4545 40 1 2.9563 -6.6248 0.4552 41 1 3.0730 -6.8323 2.9237 42 1 4.6304 -5.9706 2.9224 43 1 5.6123 -7.7490 1.4997 44 1 4.0545 -8.6101 1.5014 45 1 4.8282 -8.1639 4.1810 46 1 5.7984 -9.9373 5.3484 47 1 6.4980 -11.2133 4.5085 48 1 1.9379 -2.7020 -2.0981 49 1 0.4144 -2.1368 -1.3685 50 1 0.4700 -0.0344 -2.5556 51 1 1.8673 1.0628 -2.4453 52 1 2.7313 -1.3659 -3.5995 53 1 3.5896 -2.1427 -6.7280 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132960100.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:57 Heat of formation + Delta-G solvation = -111.163764 kcal Electronic energy + Delta-G solvation = -29786.329963 eV Core-core repulsion = 25690.840033 eV Total energy + Delta-G solvation = -4095.489930 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44508 -40.81277 -39.36679 -37.02544 -36.61843 -35.02445 -34.82851 -34.07748 -33.45983 -31.57014 -30.18432 -28.62426 -27.29050 -26.00346 -24.91292 -24.60489 -22.54427 -22.38634 -22.04434 -20.65080 -19.36613 -19.14586 -18.89421 -18.19985 -17.95219 -17.13477 -16.93852 -16.76118 -16.46904 -16.04805 -15.74589 -15.69107 -15.61541 -15.36025 -15.19101 -14.93069 -14.60495 -14.38751 -14.22027 -13.78199 -13.74856 -13.39371 -13.06646 -12.88963 -12.86008 -12.70951 -12.59247 -12.44381 -12.38021 -12.15241 -12.07941 -11.93450 -11.91752 -11.69227 -11.54304 -11.51041 -11.32258 -11.18758 -10.94292 -10.74451 -10.68350 -9.96506 -9.51069 -9.02244 -7.96206 -5.26870 1.43053 1.46493 1.55021 1.71707 1.93384 2.12886 2.17030 2.53732 3.36475 3.55370 3.69006 3.75726 3.81402 3.87186 3.89044 4.03866 4.13655 4.20600 4.31936 4.33488 4.39030 4.41574 4.56234 4.57093 4.59188 4.71845 4.79637 4.81115 4.84582 4.86202 4.89115 4.95371 5.03779 5.06290 5.11877 5.22509 5.27865 5.32853 5.33212 5.41652 5.43777 5.47179 5.50983 5.60775 5.64146 5.92848 6.04743 6.24207 6.54625 7.14748 7.29322 7.29612 7.67196 8.06613 8.28460 9.27261 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.002034 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.933185 B =13765.718767 C =15923.915778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.076 0.924 4 C -0.123 4.123 5 C 0.098 3.902 6 N -0.610 5.610 7 C 0.492 3.508 8 O -0.600 6.600 9 C -0.121 4.121 10 C -0.105 4.105 11 C -0.108 4.108 12 C 0.134 3.866 13 N -0.728 5.728 14 C 0.693 3.307 15 N -0.846 5.846 16 O -0.655 6.655 17 C 0.128 3.872 18 C -0.088 4.088 19 H 0.047 0.953 20 C 0.158 3.842 21 N -0.748 5.748 22 C -0.246 4.246 23 H 0.080 0.920 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.265 1.265 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.417 0.583 46 H 0.416 0.584 47 H 0.419 0.581 48 H 0.042 0.958 49 H 0.068 0.932 50 H 0.029 0.971 51 H 0.022 0.978 52 H 0.369 0.631 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.826 -5.659 35.121 35.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.023 4.023 6 N -0.343 5.343 7 C 0.282 3.718 8 O -0.481 6.481 9 C -0.160 4.160 10 C -0.144 4.144 11 C -0.145 4.145 12 C 0.009 3.991 13 N -0.386 5.386 14 C 0.390 3.610 15 N -0.416 5.416 16 O -0.538 6.538 17 C 0.005 3.995 18 C -0.108 4.108 19 H 0.066 0.934 20 C 0.032 3.968 21 N -0.391 5.391 22 C -0.377 4.377 23 H 0.098 0.902 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.807 3.193 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.190 1.190 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.254 0.746 46 H 0.247 0.753 47 H 0.252 0.748 48 H 0.061 0.939 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.040 0.960 52 H 0.201 0.799 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.622 -6.096 33.551 34.201 hybrid contribution 0.429 -0.159 -1.426 1.498 sum -2.192 -6.255 32.124 32.801 Atomic orbital electron populations 1.21955 0.94109 1.02083 1.02409 1.21082 0.96855 0.99239 0.92822 0.90512 1.22026 1.00802 0.95210 0.98061 1.22286 1.01715 0.93702 0.84553 1.48329 1.56916 1.21095 1.07919 1.21855 0.76445 0.80678 0.92785 1.90761 1.55828 1.64954 1.36578 1.21718 1.04188 0.97147 0.92980 1.21205 1.00022 0.95564 0.97560 1.21642 1.01826 0.94054 0.97025 1.21159 0.98800 0.94257 0.84911 1.44871 1.61871 1.21354 1.10469 1.16345 0.78648 0.81480 0.84516 1.42769 1.64969 1.27335 1.06493 1.90966 1.62548 1.67292 1.33001 1.21290 0.99168 0.92723 0.86360 1.21523 0.99142 0.94378 0.95777 0.93441 1.20891 0.95921 0.94803 0.85234 1.42693 1.57059 1.37269 1.02051 1.19679 1.22464 1.10564 0.85021 0.90249 1.25696 1.00621 0.98980 1.02083 1.69880 1.37375 1.25952 1.29154 0.85071 0.78257 0.76797 0.79222 1.21172 1.22439 1.18955 0.92560 0.89954 0.93760 0.92092 0.87000 0.89464 0.86055 0.85235 0.85688 0.93579 0.93135 0.88363 0.88639 0.93716 0.93477 0.74563 0.75277 0.74839 0.93925 0.91396 0.95324 0.95976 0.79928 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.11 71.98 0.58 -2.22 16 2 C -0.08 -1.74 2.71 -10.76 -0.03 -1.76 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -1.73 5.64 30.82 0.17 -1.55 16 5 C 0.10 1.33 5.90 86.51 0.51 1.84 16 6 N -0.61 -15.81 2.97 -818.08 -2.43 -18.23 16 7 C 0.49 14.24 7.70 87.66 0.67 14.91 16 8 O -0.60 -25.76 15.40 -3.04 -0.05 -25.81 16 9 C -0.12 -1.78 4.05 29.85 0.12 -1.66 16 10 C -0.10 -1.89 4.50 30.60 0.14 -1.75 16 11 C -0.11 -1.00 5.33 30.59 0.16 -0.83 16 12 C 0.13 2.18 5.67 86.38 0.49 2.67 16 13 N -0.73 -8.61 5.56 -478.54 -2.66 -11.27 16 14 C 0.69 12.56 8.84 179.05 1.58 14.14 16 15 N -0.85 -6.40 8.88 -184.74 -1.64 -8.04 16 16 O -0.66 -20.27 17.18 -4.01 -0.07 -20.33 16 17 C 0.13 4.50 5.04 86.36 0.44 4.93 16 18 C -0.09 -2.93 2.15 -10.72 -0.02 -2.95 16 19 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 20 C 0.16 6.54 5.19 86.38 0.45 6.99 16 21 N -0.75 -40.96 5.38 -343.45 -1.85 -42.81 16 22 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 23 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 24 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 25 N -0.97 -64.50 13.06 21.65 0.28 -64.22 16 26 Si 0.98 48.66 29.55 68.60 2.03 50.68 16 27 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 29 H -0.26 -12.27 7.11 99.48 0.71 -11.57 16 30 H 0.06 1.08 4.97 -2.39 -0.01 1.06 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.04 1.01 6.57 -2.39 -0.02 0.99 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.97 6.69 -2.39 -0.02 0.95 16 36 H 0.12 0.71 5.93 -2.39 -0.01 0.69 16 37 H 0.13 0.96 7.93 -2.39 -0.02 0.94 16 38 H 0.13 1.07 7.70 -2.39 -0.02 1.05 16 39 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 40 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 41 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.42 1.25 8.49 -92.71 -0.79 0.46 16 46 H 0.42 -0.22 8.84 -92.71 -0.82 -1.04 16 47 H 0.42 2.82 8.93 -92.71 -0.83 1.99 16 48 H 0.04 2.01 6.21 -2.39 -0.01 2.00 16 49 H 0.07 2.30 6.70 -2.39 -0.02 2.28 16 50 H 0.03 1.16 6.72 -2.38 -0.02 1.15 16 51 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.37 22.29 6.89 -92.71 -0.64 21.65 16 53 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -96.60 411.95 -1.93 -98.52 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -2.12 Total: 26.99 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 6.58 Total: 14.52 kcal Atomic # 7 Polarization: -136.28 SS G_CDS: -8.29 Total: -144.57 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.12 Total: -46.14 kcal Atomic # 14 Polarization: 48.66 SS G_CDS: 2.03 Total: 50.68 kcal Total: -96.60 -1.93 -98.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132960100.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.640 kcal (2) G-P(sol) polarization free energy of solvation -96.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds