Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99293 * 2 1 4 4 O 1.21585 * 120.00311 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99411 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99667 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47131 * 56.39537 * 6 5 3 8 8 C 1.53000 * 109.47273 * 296.39151 * 6 5 3 9 9 C 1.50701 * 109.46852 * 176.39302 * 6 5 3 10 10 O 1.21287 * 119.99625 * 135.19608 * 9 6 5 11 11 N 1.34772 * 120.00238 * 315.20254 * 9 6 5 12 12 C 1.46929 * 120.62702 * 354.60749 * 11 9 6 13 13 C 1.53193 * 108.77114 * 126.39909 * 12 11 9 14 14 C 1.53042 * 109.31444 * 54.63363 * 13 12 11 15 15 H 1.09002 * 109.45659 * 178.61697 * 14 13 12 16 16 C 1.52998 * 109.46215 * 58.64105 * 14 13 12 17 17 C 1.53042 * 109.53773 * 298.63486 * 14 13 12 18 18 H 1.09003 * 109.49635 * 301.41276 * 17 14 13 19 19 C 1.52995 * 109.49844 * 181.34988 * 17 14 13 20 20 N 1.46504 * 109.47259 * 174.99993 * 19 17 14 21 21 C 1.36938 * 119.99946 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00090 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99973 * 180.02562 * 21 20 19 24 24 N 1.31613 * 119.99754 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00094 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46977 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47445 * 119.99528 * 25 23 21 28 28 H 1.48502 * 109.47214 * 239.99987 * 25 23 21 29 29 C 1.46925 * 120.63088 * 174.61378 * 11 9 6 30 30 H 1.09001 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47848 * 300.00016 * 1 2 3 32 32 H 1.08998 * 109.47481 * 60.00592 * 1 2 3 33 33 H 0.96998 * 120.00045 * 179.97438 * 2 1 3 34 34 H 0.96998 * 119.99927 * 359.97438 * 5 3 2 35 35 H 1.09005 * 109.47548 * 173.32564 * 7 6 5 36 36 H 1.09006 * 109.47411 * 293.32507 * 7 6 5 37 37 H 1.09001 * 109.47236 * 53.32663 * 7 6 5 38 38 H 1.08992 * 109.47576 * 300.00505 * 8 6 5 39 39 H 1.09006 * 109.46838 * 60.00092 * 8 6 5 40 40 H 1.08997 * 109.47282 * 180.02562 * 8 6 5 41 41 H 1.08991 * 109.58987 * 6.61189 * 12 11 9 42 42 H 1.08999 * 109.58690 * 246.18227 * 12 11 9 43 43 H 1.08996 * 109.49731 * 174.58447 * 13 12 11 44 44 H 1.09004 * 109.49806 * 294.64990 * 13 12 11 45 45 H 1.09005 * 109.46636 * 59.99748 * 16 14 13 46 46 H 1.08991 * 109.47410 * 179.97438 * 16 14 13 47 47 H 1.08994 * 109.47109 * 300.00625 * 16 14 13 48 48 H 1.08994 * 109.47357 * 295.00184 * 19 17 14 49 49 H 1.09000 * 109.47251 * 54.99838 * 19 17 14 50 50 H 0.96994 * 119.99876 * 0.02562 * 20 19 17 51 51 H 0.97001 * 119.99660 * 180.02562 * 24 23 21 52 52 H 1.09006 * 109.58759 * 113.81446 * 29 11 9 53 53 H 1.08997 * 109.58573 * 353.39428 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5308 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.2190 2.4361 0.0000 7 6 3.7821 3.2777 1.2006 8 6 3.9192 3.1975 -1.2928 9 6 5.6981 2.1623 0.0901 10 8 6.4705 2.7608 -0.6284 11 7 6.1627 1.2522 0.9690 12 6 5.2553 0.6052 1.9264 13 6 5.4030 -0.9141 1.7962 14 6 6.8749 -1.2962 1.9683 15 1 6.9792 -2.3791 1.9004 16 6 7.3683 -0.8212 3.3364 17 6 7.7076 -0.6339 0.8682 18 1 7.3407 -0.9525 -0.1075 19 6 9.1738 -1.0434 1.0210 20 7 9.9501 -0.5069 -0.0997 21 6 11.2960 -0.7469 -0.1773 22 1 11.7852 -1.3320 0.5875 23 6 12.0316 -0.2381 -1.2388 24 7 11.4354 0.4745 -2.1710 25 14 13.8678 -0.5648 -1.3443 26 1 14.2923 -1.3848 -0.1812 27 1 14.1692 -1.2951 -2.6018 28 1 14.6017 0.7261 -1.3335 29 6 7.5861 0.8885 0.9879 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.9500 -0.8400 0.0004 34 1 3.9716 0.3273 0.0013 35 1 4.4087 4.1670 1.2684 36 1 2.7409 3.5755 1.0760 37 1 3.8852 2.6902 2.1129 38 1 4.2304 2.5980 -2.1482 39 1 2.8492 3.3956 -1.3580 40 1 4.4644 4.1413 -1.2934 41 1 4.2271 0.8925 1.7070 42 1 5.5142 0.9119 2.9398 43 1 4.8074 -1.4048 2.5659 44 1 5.0572 -1.2301 0.8119 45 1 6.7760 -1.2935 4.1202 46 1 8.4164 -1.0936 3.4593 47 1 7.2634 0.2616 3.4046 48 1 9.5660 -0.6470 1.9575 49 1 9.2485 -2.1308 1.0272 50 1 9.5106 0.0183 -0.7866 51 1 11.9494 0.8297 -2.9130 52 1 8.0351 1.2183 1.9248 53 1 8.0956 1.3628 0.1492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133332870.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -64.601089 kcal Electronic energy + Delta-G solvation = -32387.747787 eV Core-core repulsion = 28294.276966 eV Total energy + Delta-G solvation = -4093.470821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41459 -40.78458 -39.50640 -37.19884 -36.52102 -35.50145 -34.77213 -33.50297 -32.48050 -31.50632 -28.76238 -28.43233 -27.60750 -27.16163 -26.12775 -24.91048 -23.88688 -22.58471 -21.78265 -20.81773 -19.75880 -19.35960 -18.92384 -18.53960 -17.28047 -16.79891 -16.66065 -16.54121 -16.21889 -16.17269 -15.72461 -15.48326 -15.39767 -15.21001 -15.02667 -14.69487 -14.49136 -14.27548 -14.06612 -13.83242 -13.76845 -13.36624 -13.23366 -13.05498 -12.97892 -12.94244 -12.89612 -12.77767 -12.65193 -12.43341 -12.36507 -12.11793 -12.00687 -11.90993 -11.73179 -11.45485 -11.30589 -11.21251 -10.94379 -10.70540 -10.31018 -9.81238 -9.65779 -9.00030 -7.95104 -5.24885 1.16250 1.44831 1.46513 1.56466 1.79528 1.83930 2.12330 2.54833 3.17486 3.26333 3.38346 3.66916 3.79348 3.81328 3.87186 3.89475 4.03940 4.20877 4.26796 4.39128 4.46690 4.51929 4.57920 4.58856 4.63169 4.70765 4.74794 4.76404 4.78171 4.78720 4.84097 4.92802 4.98449 5.05954 5.10677 5.11314 5.15691 5.19885 5.24670 5.28541 5.32722 5.41010 5.47769 5.50178 5.55979 5.61339 5.89982 6.25896 6.29360 6.97303 7.02465 7.31589 7.56132 8.08918 8.29960 9.28459 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.002955 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.467820 B = 9472.476726 C =10260.822666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.736 5.736 3 C 0.703 3.297 4 O -0.613 6.613 5 N -0.730 5.730 6 C 0.191 3.809 7 C -0.156 4.156 8 C -0.143 4.143 9 C 0.507 3.493 10 O -0.571 6.571 11 N -0.595 5.595 12 C 0.071 3.929 13 C -0.123 4.123 14 C -0.078 4.078 15 H 0.086 0.914 16 C -0.151 4.151 17 C -0.088 4.088 18 H 0.056 0.944 19 C 0.159 3.841 20 N -0.748 5.748 21 C -0.242 4.242 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.262 1.262 27 H -0.293 1.293 28 H -0.296 1.296 29 C 0.127 3.873 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.413 0.587 34 H 0.408 0.592 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.028 0.972 49 H 0.026 0.974 50 H 0.370 0.630 51 H 0.249 0.751 52 H 0.071 0.929 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.542 -5.336 12.937 29.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.392 5.392 3 C 0.403 3.597 4 O -0.493 6.493 5 N -0.390 5.390 6 C 0.101 3.899 7 C -0.214 4.214 8 C -0.202 4.202 9 C 0.294 3.706 10 O -0.449 6.449 11 N -0.327 5.327 12 C -0.050 4.050 13 C -0.161 4.161 14 C -0.097 4.097 15 H 0.104 0.896 16 C -0.208 4.208 17 C -0.108 4.108 18 H 0.075 0.925 19 C 0.032 3.968 20 N -0.391 5.391 21 C -0.374 4.374 22 H 0.097 0.903 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.186 1.186 27 H -0.221 1.221 28 H -0.223 1.223 29 C 0.005 3.995 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.249 0.751 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.105 0.895 43 H 0.134 0.866 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.046 0.954 49 H 0.044 0.956 50 H 0.202 0.798 51 H 0.058 0.942 52 H 0.089 0.911 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -25.553 -4.166 12.654 28.817 hybrid contribution 1.990 -0.284 -1.059 2.273 sum -23.562 -4.451 11.595 26.635 Atomic orbital electron populations 1.21544 0.76962 1.04035 1.01412 1.44897 1.08395 1.06690 1.79255 1.16041 0.81177 0.84930 0.77525 1.90867 1.68288 1.31385 1.58716 1.45476 1.05009 1.08598 1.79962 1.20143 0.85407 0.85378 0.99006 1.22284 1.04136 0.99623 0.95373 1.21969 1.03102 1.00243 0.94865 1.21004 0.90717 0.79429 0.79432 1.90781 1.59145 1.50208 1.44771 1.48218 1.09337 1.40208 1.34963 1.22761 0.95341 0.93894 0.93028 1.22012 0.95982 0.94154 1.03974 1.21058 0.94466 1.00435 0.93710 0.89612 1.21968 1.01358 1.01323 0.96166 1.21547 0.95377 0.93969 0.99919 0.92506 1.20877 0.89805 0.96012 0.90072 1.42689 1.05725 1.63611 1.27042 1.19685 0.85933 1.26066 1.05695 0.90326 1.25629 1.02659 1.01263 0.97639 1.69865 1.36386 1.41721 1.14254 0.85058 0.80103 0.76956 0.77555 1.18609 1.22061 1.22329 1.21437 0.80847 0.95545 1.01704 0.87196 0.92826 0.93676 0.75122 0.75337 0.91658 0.89041 0.90136 0.93425 0.89791 0.91635 0.86399 0.89544 0.86559 0.91087 0.90092 0.93483 0.92922 0.95435 0.95627 0.79828 0.94192 0.91084 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 10.70 127.77 1.37 2.24 16 2 N -0.74 -7.75 5.72 -500.19 -2.86 -10.61 16 3 C 0.70 12.85 7.99 179.05 1.43 14.28 16 4 O -0.61 -15.52 12.64 -3.98 -0.05 -15.57 16 5 N -0.73 -12.95 3.06 -441.45 -1.35 -14.30 16 6 C 0.19 4.57 0.63 2.86 0.00 4.57 16 7 C -0.16 -3.25 7.95 71.98 0.57 -2.68 16 8 C -0.14 -3.90 7.86 71.98 0.57 -3.33 16 9 C 0.51 15.59 6.52 87.66 0.57 16.17 16 10 O -0.57 -24.08 15.43 -3.05 -0.05 -24.13 16 11 N -0.60 -15.32 2.91 -818.92 -2.39 -17.70 16 12 C 0.07 1.08 4.09 86.36 0.35 1.43 16 13 C -0.12 -1.46 5.43 30.67 0.17 -1.29 16 14 C -0.08 -1.45 2.71 -10.77 -0.03 -1.48 16 15 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 16 C -0.15 -2.63 8.11 71.98 0.58 -2.05 16 17 C -0.09 -2.65 2.15 -10.72 -0.02 -2.67 16 18 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 19 C 0.16 6.13 5.19 86.38 0.45 6.58 16 20 N -0.75 -38.99 5.38 -343.45 -1.85 -40.83 16 21 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 23 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 24 N -0.97 -62.52 13.06 21.65 0.28 -62.23 16 25 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 26 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 C 0.13 4.20 5.04 86.36 0.44 4.64 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.41 1.89 8.84 -92.71 -0.82 1.07 16 34 H 0.41 5.95 5.80 -92.71 -0.54 5.41 16 35 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.09 2.06 6.15 -2.38 -0.01 2.04 16 37 H 0.08 1.35 6.19 -2.39 -0.01 1.34 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 2.24 6.43 -2.38 -0.02 2.22 16 40 H 0.06 1.88 7.94 -2.39 -0.02 1.86 16 41 H 0.12 1.53 3.40 -2.39 -0.01 1.52 16 42 H 0.09 1.17 6.69 -2.39 -0.02 1.15 16 43 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.77 7.22 -2.38 -0.02 0.76 16 45 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.05 0.99 6.57 -2.39 -0.02 0.98 16 47 H 0.05 0.97 4.98 -2.39 -0.01 0.96 16 48 H 0.03 1.06 6.73 -2.39 -0.02 1.04 16 49 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.37 21.23 6.90 -92.71 -0.64 20.59 16 51 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 52 H 0.07 2.28 6.69 -2.38 -0.02 2.27 16 53 H 0.05 2.18 6.25 -2.39 -0.01 2.16 16 Total: -1.00 -81.48 393.28 0.48 -81.00 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -1.04 Total: 35.72 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 7.75 Total: 19.15 kcal Atomic # 7 Polarization: -137.52 SS G_CDS: -8.16 Total: -145.68 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.10 Total: -39.70 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -81.48 0.48 -81.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133332870.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.399 kcal (2) G-P(sol) polarization free energy of solvation -81.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds